Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06898 and MPMX19_06899 overlap by 4 nucleotides MPMX19_06899 and MPMX19_06900 are separated by 51 nucleotides
MPMX19_06898: MPMX19_06898 - FAD-dependent urate hydroxylase, at 172,428 to 173,885
_06898
MPMX19_06899: MPMX19_06899 - hypothetical protein, at 173,882 to 174,973
_06899
MPMX19_06900: MPMX19_06900 - Nucleoid occlusion protein, at 175,025 to 175,864
_06900
Position (kb) 173
174
175 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 172.940 kb on - strand, within MPMX19_06898 at 173.196 kb on + strand, within MPMX19_06898 at 173.196 kb on + strand, within MPMX19_06898 at 173.196 kb on + strand, within MPMX19_06898 at 173.196 kb on + strand, within MPMX19_06898 at 173.316 kb on + strand, within MPMX19_06898 at 173.316 kb on + strand, within MPMX19_06898 at 173.316 kb on + strand, within MPMX19_06898 at 173.316 kb on + strand, within MPMX19_06898 at 173.316 kb on + strand, within MPMX19_06898 at 173.316 kb on + strand, within MPMX19_06898 at 173.316 kb on + strand, within MPMX19_06898 at 173.799 kb on + strand at 173.799 kb on + strand at 173.799 kb on + strand at 173.799 kb on + strand at 173.799 kb on + strand at 173.799 kb on + strand at 173.799 kb on + strand at 174.299 kb on + strand, within MPMX19_06899 at 174.299 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.684 kb on - strand, within MPMX19_06899 at 174.684 kb on - strand, within MPMX19_06899 at 175.238 kb on + strand, within MPMX19_06900 at 175.238 kb on + strand, within MPMX19_06900 at 175.408 kb on - strand, within MPMX19_06900 at 175.960 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 172,940 - MPMX19_06898 0.35 +0.3 173,196 + MPMX19_06898 0.53 -0.2 173,196 + MPMX19_06898 0.53 +0.2 173,196 + MPMX19_06898 0.53 +0.0 173,196 + MPMX19_06898 0.53 +0.5 173,316 + MPMX19_06898 0.61 -0.2 173,316 + MPMX19_06898 0.61 -0.9 173,316 + MPMX19_06898 0.61 +0.4 173,316 + MPMX19_06898 0.61 +0.5 173,316 + MPMX19_06898 0.61 +0.6 173,316 + MPMX19_06898 0.61 +2.8 173,316 + MPMX19_06898 0.61 +0.6 173,799 + +0.6 173,799 + -0.2 173,799 + +0.4 173,799 + +1.6 173,799 + +0.2 173,799 + -0.2 173,799 + -1.5 174,299 + MPMX19_06899 0.38 -1.4 174,299 + MPMX19_06899 0.38 -1.6 174,608 + MPMX19_06899 0.66 +0.1 174,608 + MPMX19_06899 0.66 +0.2 174,608 + MPMX19_06899 0.66 -0.4 174,608 + MPMX19_06899 0.66 -1.1 174,608 + MPMX19_06899 0.66 -0.4 174,608 + MPMX19_06899 0.66 -0.7 174,608 + MPMX19_06899 0.66 -0.1 174,608 + MPMX19_06899 0.66 +0.5 174,608 + MPMX19_06899 0.66 -0.8 174,608 + MPMX19_06899 0.66 -1.2 174,608 + MPMX19_06899 0.66 -0.6 174,608 + MPMX19_06899 0.66 +1.1 174,608 + MPMX19_06899 0.66 +0.0 174,608 + MPMX19_06899 0.66 -0.4 174,608 + MPMX19_06899 0.66 -0.2 174,608 + MPMX19_06899 0.66 -1.6 174,608 + MPMX19_06899 0.66 -0.4 174,608 + MPMX19_06899 0.66 -0.8 174,608 + MPMX19_06899 0.66 -1.3 174,609 - MPMX19_06899 0.67 -0.8 174,609 - MPMX19_06899 0.67 -0.6 174,609 - MPMX19_06899 0.67 -0.2 174,609 - MPMX19_06899 0.67 +0.8 174,609 - MPMX19_06899 0.67 -0.3 174,609 - MPMX19_06899 0.67 -0.1 174,609 - MPMX19_06899 0.67 +0.4 174,609 - MPMX19_06899 0.67 -0.5 174,609 - MPMX19_06899 0.67 -1.0 174,609 - MPMX19_06899 0.67 -0.2 174,609 - MPMX19_06899 0.67 -0.5 174,609 - MPMX19_06899 0.67 -0.9 174,609 - MPMX19_06899 0.67 -0.2 174,609 - MPMX19_06899 0.67 +0.8 174,609 - MPMX19_06899 0.67 -0.8 174,684 - MPMX19_06899 0.73 -0.6 174,684 - MPMX19_06899 0.73 -1.9 175,238 + MPMX19_06900 0.25 +0.5 175,238 + MPMX19_06900 0.25 -1.1 175,408 - MPMX19_06900 0.46 +1.2 175,960 + -0.6
Or see this region's nucleotide sequence