Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06877 and MPMX19_06878 are separated by 8 nucleotides MPMX19_06878 and MPMX19_06879 are separated by 372 nucleotides MPMX19_06879 and MPMX19_06880 are separated by 90 nucleotides
MPMX19_06877: MPMX19_06877 - hypothetical protein, at 148,468 to 149,637
_06877
MPMX19_06878: MPMX19_06878 - Putative amino-acid ABC transporter-binding protein YhdW, at 149,646 to 150,716
_06878
MPMX19_06879: MPMX19_06879 - hypothetical protein, at 151,089 to 151,280
_06879
MPMX19_06880: MPMX19_06880 - Validamycin A dioxygenase, at 151,371 to 152,417
_06880
Position (kb) 149
150
151 Strain fitness (log2 ratio) -2
-1
0
1 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.666 kb on - strand at 149.785 kb on + strand, within MPMX19_06878 at 150.026 kb on - strand, within MPMX19_06878 at 150.026 kb on - strand, within MPMX19_06878 at 150.026 kb on - strand, within MPMX19_06878 at 150.026 kb on - strand, within MPMX19_06878 at 150.296 kb on - strand, within MPMX19_06878 at 150.296 kb on - strand, within MPMX19_06878 at 150.296 kb on - strand, within MPMX19_06878 at 150.296 kb on - strand, within MPMX19_06878 at 150.296 kb on - strand, within MPMX19_06878 at 151.057 kb on - strand at 151.075 kb on - strand at 151.636 kb on - strand, within MPMX19_06880 at 151.636 kb on - strand, within MPMX19_06880 at 151.636 kb on - strand, within MPMX19_06880 at 151.636 kb on - strand, within MPMX19_06880
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 149,258 + MPMX19_06877 0.68 -1.9 149,258 + MPMX19_06877 0.68 -2.1 149,258 + MPMX19_06877 0.68 -0.4 149,258 + MPMX19_06877 0.68 -0.3 149,258 + MPMX19_06877 0.68 -0.7 149,258 + MPMX19_06877 0.68 -0.4 149,258 + MPMX19_06877 0.68 -0.0 149,258 + MPMX19_06877 0.68 -0.5 149,258 + MPMX19_06877 0.68 +0.2 149,259 - MPMX19_06877 0.68 +1.2 149,259 - MPMX19_06877 0.68 -0.9 149,259 - MPMX19_06877 0.68 -0.4 149,259 - MPMX19_06877 0.68 -0.6 149,259 - MPMX19_06877 0.68 -0.4 149,259 - MPMX19_06877 0.68 -2.3 149,259 - MPMX19_06877 0.68 -0.2 149,666 - -0.3 149,785 + MPMX19_06878 0.13 -0.6 150,026 - MPMX19_06878 0.35 -1.6 150,026 - MPMX19_06878 0.35 -0.8 150,026 - MPMX19_06878 0.35 -1.0 150,026 - MPMX19_06878 0.35 -1.0 150,296 - MPMX19_06878 0.61 +0.4 150,296 - MPMX19_06878 0.61 -0.7 150,296 - MPMX19_06878 0.61 +0.2 150,296 - MPMX19_06878 0.61 +0.6 150,296 - MPMX19_06878 0.61 -2.0 151,057 - +0.2 151,075 - -1.1 151,636 - MPMX19_06880 0.25 -1.9 151,636 - MPMX19_06880 0.25 -1.5 151,636 - MPMX19_06880 0.25 -0.4 151,636 - MPMX19_06880 0.25 -0.2
Or see this region's nucleotide sequence