Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06509

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06508 and MPMX19_06509 are separated by 225 nucleotidesMPMX19_06509 and MPMX19_06510 overlap by 4 nucleotidesMPMX19_06510 and MPMX19_06511 are separated by 88 nucleotides MPMX19_06508: MPMX19_06508 - Nitrilotriacetate monooxygenase component A, at 292,000 to 293,319 _06508 MPMX19_06509: MPMX19_06509 - Putative aliphatic sulfonates transport permease protein SsuC, at 293,545 to 294,420 _06509 MPMX19_06510: MPMX19_06510 - Aliphatic sulfonates import ATP-binding protein SsuB, at 294,417 to 295,142 _06510 MPMX19_06511: MPMX19_06511 - hypothetical protein, at 295,231 to 296,271 _06511 Position (kb) 293 294 295Strain fitness (log2 ratio) -2 -1 0 1at 292.816 kb on - strand, within MPMX19_06508at 292.927 kb on + strand, within MPMX19_06508at 292.927 kb on + strand, within MPMX19_06508at 292.927 kb on + strand, within MPMX19_06508at 292.927 kb on + strand, within MPMX19_06508at 292.927 kb on + strand, within MPMX19_06508at 293.066 kb on - strand, within MPMX19_06508at 293.179 kb on + strand, within MPMX19_06508at 293.179 kb on + strand, within MPMX19_06508at 293.448 kb on - strandat 294.027 kb on - strand, within MPMX19_06509at 294.027 kb on - strand, within MPMX19_06509at 294.055 kb on + strand, within MPMX19_06509at 294.055 kb on + strand, within MPMX19_06509at 294.328 kb on + strand, within MPMX19_06509at 294.328 kb on + strand, within MPMX19_06509at 294.328 kb on + strand, within MPMX19_06509at 294.328 kb on + strand, within MPMX19_06509at 294.328 kb on + strand, within MPMX19_06509at 294.328 kb on + strand, within MPMX19_06509at 294.360 kb on - strandat 294.403 kb on + strandat 294.404 kb on - strandat 294.404 kb on - strandat 294.404 kb on - strandat 294.404 kb on - strandat 294.442 kb on + strandat 294.442 kb on + strandat 294.442 kb on + strandat 294.442 kb on + strandat 294.443 kb on - strandat 294.443 kb on - strandat 294.443 kb on - strandat 294.495 kb on + strand, within MPMX19_06510at 294.495 kb on + strand, within MPMX19_06510at 294.496 kb on - strand, within MPMX19_06510at 294.496 kb on - strand, within MPMX19_06510at 294.496 kb on - strand, within MPMX19_06510at 294.496 kb on - strand, within MPMX19_06510at 294.712 kb on + strand, within MPMX19_06510at 294.712 kb on + strand, within MPMX19_06510at 295.346 kb on + strand, within MPMX19_06511at 295.347 kb on - strand, within MPMX19_06511at 295.396 kb on - strand, within MPMX19_06511at 295.396 kb on - strand, within MPMX19_06511

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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292,816 - MPMX19_06508 0.62 -0.5
292,927 + MPMX19_06508 0.70 +0.2
292,927 + MPMX19_06508 0.70 -0.3
292,927 + MPMX19_06508 0.70 +0.0
292,927 + MPMX19_06508 0.70 -0.2
292,927 + MPMX19_06508 0.70 -1.1
293,066 - MPMX19_06508 0.81 -0.7
293,179 + MPMX19_06508 0.89 -2.1
293,179 + MPMX19_06508 0.89 -1.8
293,448 - -1.1
294,027 - MPMX19_06509 0.55 -0.5
294,027 - MPMX19_06509 0.55 -0.7
294,055 + MPMX19_06509 0.58 +0.6
294,055 + MPMX19_06509 0.58 -1.9
294,328 + MPMX19_06509 0.89 -1.8
294,328 + MPMX19_06509 0.89 -2.4
294,328 + MPMX19_06509 0.89 -0.1
294,328 + MPMX19_06509 0.89 -0.1
294,328 + MPMX19_06509 0.89 -0.4
294,328 + MPMX19_06509 0.89 -0.6
294,360 - +0.3
294,403 + -1.0
294,404 - -0.5
294,404 - +0.6
294,404 - -0.2
294,404 - -0.3
294,442 + -1.5
294,442 + -0.1
294,442 + -0.8
294,442 + +0.0
294,443 - +0.2
294,443 - -0.5
294,443 - +0.9
294,495 + MPMX19_06510 0.11 -0.9
294,495 + MPMX19_06510 0.11 -1.4
294,496 - MPMX19_06510 0.11 +0.6
294,496 - MPMX19_06510 0.11 +0.3
294,496 - MPMX19_06510 0.11 +0.7
294,496 - MPMX19_06510 0.11 -0.9
294,712 + MPMX19_06510 0.41 -0.7
294,712 + MPMX19_06510 0.41 -0.2
295,346 + MPMX19_06511 0.11 +0.3
295,347 - MPMX19_06511 0.11 -0.3
295,396 - MPMX19_06511 0.16 -0.7
295,396 - MPMX19_06511 0.16 -0.9

Or see this region's nucleotide sequence