Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06229 and MPMX19_06230 are separated by 374 nucleotides MPMX19_06230 and MPMX19_06231 are separated by 611 nucleotides
MPMX19_06229: MPMX19_06229 - L-arabonate dehydratase, at 415,789 to 417,627
_06229
MPMX19_06230: MPMX19_06230 - hypothetical protein, at 418,002 to 418,658
_06230
MPMX19_06231: MPMX19_06231 - Ribonuclease J, at 419,270 to 420,790
_06231
Position (kb) 418
419 Strain fitness (log2 ratio) -2
-1
0
1
2 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.580 kb on + strand at 417.580 kb on + strand at 417.580 kb on + strand at 417.580 kb on + strand at 417.580 kb on + strand at 417.581 kb on - strand at 417.581 kb on - strand at 417.581 kb on - strand at 417.581 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.777 kb on + strand at 417.777 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.906 kb on - strand at 417.912 kb on + strand at 417.943 kb on + strand at 417.944 kb on - strand at 418.281 kb on - strand, within MPMX19_06230 at 418.281 kb on - strand, within MPMX19_06230 at 418.281 kb on - strand, within MPMX19_06230 at 418.513 kb on + strand, within MPMX19_06230 at 418.522 kb on + strand, within MPMX19_06230 at 418.613 kb on + strand at 418.614 kb on - strand at 418.662 kb on + strand at 418.662 kb on + strand at 418.679 kb on + strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.725 kb on - strand at 418.735 kb on + strand at 418.736 kb on - strand at 418.736 kb on - strand at 418.736 kb on - strand at 418.736 kb on - strand at 418.809 kb on + strand at 418.809 kb on + strand at 418.809 kb on + strand at 418.809 kb on + strand at 418.810 kb on - strand at 418.810 kb on - strand at 418.810 kb on - strand at 418.811 kb on + strand at 418.811 kb on + strand at 418.812 kb on - strand at 418.812 kb on - strand at 418.823 kb on + strand at 418.823 kb on + strand at 418.830 kb on - strand at 418.968 kb on + strand at 418.968 kb on + strand at 418.968 kb on + strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.986 kb on + strand at 418.986 kb on + strand at 418.986 kb on + strand at 418.986 kb on + strand at 418.987 kb on - strand at 418.987 kb on - strand at 419.080 kb on - strand at 419.116 kb on + strand at 419.116 kb on + strand at 419.116 kb on + strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.247 kb on + strand at 419.247 kb on + strand at 419.247 kb on + strand at 419.247 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.478 kb on - strand, within MPMX19_06231 at 419.478 kb on - strand, within MPMX19_06231 at 419.478 kb on - strand, within MPMX19_06231 at 419.635 kb on + strand, within MPMX19_06231
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 417,055 + MPMX19_06229 0.69 -0.5 417,055 + MPMX19_06229 0.69 +0.2 417,055 + MPMX19_06229 0.69 -0.3 417,055 + MPMX19_06229 0.69 -0.6 417,055 + MPMX19_06229 0.69 -1.8 417,056 - MPMX19_06229 0.69 +0.1 417,056 - MPMX19_06229 0.69 -0.6 417,056 - MPMX19_06229 0.69 +1.0 417,056 - MPMX19_06229 0.69 -0.1 417,056 - MPMX19_06229 0.69 -0.1 417,056 - MPMX19_06229 0.69 -0.2 417,056 - MPMX19_06229 0.69 -0.3 417,124 + MPMX19_06229 0.73 +0.9 417,124 + MPMX19_06229 0.73 -0.8 417,124 + MPMX19_06229 0.73 -0.3 417,124 + MPMX19_06229 0.73 +2.5 417,124 + MPMX19_06229 0.73 +0.4 417,124 + MPMX19_06229 0.73 -2.4 417,124 + MPMX19_06229 0.73 -1.1 417,125 - MPMX19_06229 0.73 -0.1 417,125 - MPMX19_06229 0.73 +0.5 417,125 - MPMX19_06229 0.73 -1.9 417,125 - MPMX19_06229 0.73 -0.6 417,125 - MPMX19_06229 0.73 -1.1 417,125 - MPMX19_06229 0.73 +0.7 417,125 - MPMX19_06229 0.73 +0.5 417,125 - MPMX19_06229 0.73 +0.7 417,125 - MPMX19_06229 0.73 +0.5 417,125 - MPMX19_06229 0.73 -0.4 417,125 - MPMX19_06229 0.73 +0.5 417,166 + MPMX19_06229 0.75 -0.5 417,166 + MPMX19_06229 0.75 +1.3 417,166 + MPMX19_06229 0.75 +0.6 417,166 + MPMX19_06229 0.75 -0.6 417,166 + MPMX19_06229 0.75 +0.4 417,166 + MPMX19_06229 0.75 +0.6 417,166 + MPMX19_06229 0.75 -1.0 417,167 - MPMX19_06229 0.75 -1.8 417,167 - MPMX19_06229 0.75 +0.5 417,167 - MPMX19_06229 0.75 -1.8 417,167 - MPMX19_06229 0.75 +1.3 417,167 - MPMX19_06229 0.75 -0.6 417,167 - MPMX19_06229 0.75 +0.9 417,167 - MPMX19_06229 0.75 -1.0 417,167 - MPMX19_06229 0.75 -0.6 417,580 + -1.3 417,580 + -0.7 417,580 + +0.3 417,580 + +0.3 417,580 + -0.3 417,581 - -0.2 417,581 - +0.5 417,581 - -0.2 417,581 - -1.1 417,770 - -1.9 417,770 - +1.3 417,770 - +0.3 417,770 - +2.3 417,770 - -0.5 417,777 + -0.2 417,777 + +0.5 417,899 + -1.3 417,899 + -0.1 417,899 + +0.3 417,899 + +0.9 417,899 + -1.2 417,899 + -0.5 417,899 + -0.6 417,899 + +0.1 417,900 - -0.7 417,900 - -0.7 417,900 - -0.5 417,900 - +0.3 417,900 - +0.9 417,900 - -0.6 417,900 - -2.0 417,900 - -0.6 417,900 - -1.3 417,906 - +0.0 417,912 + +0.2 417,943 + +0.7 417,944 - -1.3 418,281 - MPMX19_06230 0.42 -0.1 418,281 - MPMX19_06230 0.42 -1.1 418,281 - MPMX19_06230 0.42 -1.1 418,513 + MPMX19_06230 0.78 -0.6 418,522 + MPMX19_06230 0.79 -1.3 418,613 + +0.9 418,614 - +0.1 418,662 + -0.3 418,662 + +0.1 418,679 + +0.1 418,680 - +0.0 418,680 - +0.5 418,680 - -0.4 418,680 - -0.4 418,680 - -0.5 418,725 - -0.6 418,735 + -0.1 418,736 - -0.2 418,736 - -1.4 418,736 - -1.2 418,736 - +0.2 418,809 + -0.5 418,809 + -0.6 418,809 + -0.1 418,809 + +0.1 418,810 - -0.1 418,810 - +0.2 418,810 - +0.7 418,811 + +0.9 418,811 + -1.5 418,812 - +0.2 418,812 - -2.2 418,823 + -1.3 418,823 + +0.2 418,830 - +0.9 418,968 + -0.2 418,968 + +0.3 418,968 + +0.3 418,969 - -0.6 418,969 - +1.8 418,969 - +1.2 418,969 - -0.2 418,969 - -0.4 418,969 - -1.1 418,986 + -0.2 418,986 + +0.9 418,986 + +0.4 418,986 + +0.0 418,987 - +0.7 418,987 - -0.2 419,080 - -0.8 419,116 + -0.1 419,116 + -1.3 419,116 + -1.6 419,117 - +0.7 419,117 - -0.6 419,117 - +1.4 419,117 - -0.9 419,117 - -0.3 419,117 - -1.6 419,117 - +0.4 419,117 - -0.4 419,247 + +0.1 419,247 + -0.1 419,247 + -0.5 419,247 + +0.5 419,258 + -1.6 419,258 + +0.4 419,258 + -0.2 419,258 + +0.5 419,258 + +0.5 419,259 - -0.2 419,259 - -0.9 419,259 - -1.7 419,259 - -0.8 419,259 - -0.3 419,477 + MPMX19_06231 0.14 +0.9 419,477 + MPMX19_06231 0.14 -0.9 419,477 + MPMX19_06231 0.14 -0.1 419,477 + MPMX19_06231 0.14 +0.9 419,477 + MPMX19_06231 0.14 -0.6 419,477 + MPMX19_06231 0.14 -1.8 419,477 + MPMX19_06231 0.14 -1.1 419,478 - MPMX19_06231 0.14 -0.3 419,478 - MPMX19_06231 0.14 -0.1 419,478 - MPMX19_06231 0.14 -0.3 419,635 + MPMX19_06231 0.24 -2.3
Or see this region's nucleotide sequence