Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05812 and MPMX19_05813 are separated by 36 nucleotides MPMX19_05813 and MPMX19_05814 are separated by 118 nucleotides
MPMX19_05812: MPMX19_05812 - Hydroxypyruvate isomerase, at 539,973 to 540,767
_05812
MPMX19_05813: MPMX19_05813 - 2-hydroxy-3-oxopropionate reductase, at 540,804 to 541,688
_05813
MPMX19_05814: MPMX19_05814 - Putative hydroxypyruvate reductase, at 541,807 to 543,096
_05814
Position (kb) 540
541
542 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.073 kb on - strand, within MPMX19_05812 at 540.073 kb on - strand, within MPMX19_05812 at 540.073 kb on - strand, within MPMX19_05812 at 540.085 kb on - strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.355 kb on - strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.633 kb on + strand, within MPMX19_05812 at 540.633 kb on + strand, within MPMX19_05812 at 540.633 kb on + strand, within MPMX19_05812 at 540.634 kb on - strand, within MPMX19_05812 at 540.634 kb on - strand, within MPMX19_05812 at 540.669 kb on + strand, within MPMX19_05812 at 540.670 kb on - strand, within MPMX19_05812 at 540.670 kb on - strand, within MPMX19_05812 at 540.693 kb on + strand at 540.693 kb on + strand at 540.693 kb on + strand at 540.694 kb on - strand at 540.694 kb on - strand at 540.694 kb on - strand at 540.694 kb on - strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.742 kb on - strand at 540.742 kb on - strand at 540.797 kb on + strand at 540.797 kb on + strand at 540.798 kb on - strand at 540.798 kb on - strand at 540.803 kb on + strand at 540.803 kb on + strand at 540.803 kb on + strand at 540.803 kb on + strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 541.110 kb on + strand, within MPMX19_05813 at 541.110 kb on + strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.144 kb on - strand, within MPMX19_05813 at 541.686 kb on + strand at 541.686 kb on + strand at 541.686 kb on + strand at 541.686 kb on + strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 542.035 kb on + strand, within MPMX19_05814 at 542.035 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 540,006 + -1.3 540,006 + -0.8 540,006 + +0.1 540,006 + +3.1 540,006 + +1.5 540,006 + -1.1 540,006 + -1.3 540,006 + -0.8 540,007 - -0.5 540,007 - +0.4 540,007 - +1.2 540,007 - -0.1 540,007 - +0.2 540,007 - -1.7 540,007 - +0.9 540,007 - +0.7 540,007 - -1.1 540,007 - -0.1 540,007 - +0.7 540,072 + MPMX19_05812 0.12 -0.1 540,072 + MPMX19_05812 0.12 -0.5 540,072 + MPMX19_05812 0.12 +0.5 540,072 + MPMX19_05812 0.12 -1.3 540,072 + MPMX19_05812 0.12 +1.0 540,073 - MPMX19_05812 0.13 -0.7 540,073 - MPMX19_05812 0.13 -0.8 540,073 - MPMX19_05812 0.13 -0.2 540,085 - MPMX19_05812 0.14 -0.5 540,249 + MPMX19_05812 0.35 -0.5 540,249 + MPMX19_05812 0.35 -0.4 540,249 + MPMX19_05812 0.35 -0.1 540,249 + MPMX19_05812 0.35 +0.3 540,249 + MPMX19_05812 0.35 +1.5 540,249 + MPMX19_05812 0.35 +0.9 540,249 + MPMX19_05812 0.35 +0.5 540,249 + MPMX19_05812 0.35 +0.5 540,250 - MPMX19_05812 0.35 -0.6 540,250 - MPMX19_05812 0.35 -0.1 540,250 - MPMX19_05812 0.35 -0.8 540,250 - MPMX19_05812 0.35 -0.4 540,250 - MPMX19_05812 0.35 -0.5 540,250 - MPMX19_05812 0.35 +0.5 540,354 + MPMX19_05812 0.48 -0.5 540,354 + MPMX19_05812 0.48 +0.1 540,354 + MPMX19_05812 0.48 +0.5 540,354 + MPMX19_05812 0.48 +0.9 540,354 + MPMX19_05812 0.48 -1.1 540,355 - MPMX19_05812 0.48 -2.1 540,432 + MPMX19_05812 0.58 +0.9 540,432 + MPMX19_05812 0.58 +0.3 540,432 + MPMX19_05812 0.58 +0.2 540,432 + MPMX19_05812 0.58 +0.1 540,432 + MPMX19_05812 0.58 -1.1 540,432 + MPMX19_05812 0.58 -0.1 540,433 - MPMX19_05812 0.58 -0.5 540,433 - MPMX19_05812 0.58 +0.8 540,433 - MPMX19_05812 0.58 -0.7 540,433 - MPMX19_05812 0.58 +0.9 540,433 - MPMX19_05812 0.58 +0.6 540,501 + MPMX19_05812 0.66 +1.1 540,501 + MPMX19_05812 0.66 -1.7 540,501 + MPMX19_05812 0.66 -0.2 540,501 + MPMX19_05812 0.66 -1.1 540,501 + MPMX19_05812 0.66 +0.4 540,502 - MPMX19_05812 0.67 -0.5 540,502 - MPMX19_05812 0.67 +0.9 540,502 - MPMX19_05812 0.67 -0.9 540,502 - MPMX19_05812 0.67 +0.7 540,510 + MPMX19_05812 0.68 -0.2 540,510 + MPMX19_05812 0.68 -1.9 540,510 + MPMX19_05812 0.68 -0.8 540,510 + MPMX19_05812 0.68 -0.5 540,510 + MPMX19_05812 0.68 -1.0 540,510 + MPMX19_05812 0.68 +1.1 540,510 + MPMX19_05812 0.68 +0.5 540,510 + MPMX19_05812 0.68 -0.6 540,510 + MPMX19_05812 0.68 +1.1 540,510 + MPMX19_05812 0.68 +1.1 540,510 + MPMX19_05812 0.68 -0.7 540,510 + MPMX19_05812 0.68 +0.2 540,510 + MPMX19_05812 0.68 -0.0 540,510 + MPMX19_05812 0.68 -0.9 540,510 + MPMX19_05812 0.68 +0.3 540,510 + MPMX19_05812 0.68 -2.0 540,510 + MPMX19_05812 0.68 +0.6 540,511 - MPMX19_05812 0.68 +0.5 540,511 - MPMX19_05812 0.68 +0.1 540,511 - MPMX19_05812 0.68 -2.7 540,511 - MPMX19_05812 0.68 -1.2 540,511 - MPMX19_05812 0.68 +0.1 540,511 - MPMX19_05812 0.68 +1.2 540,511 - MPMX19_05812 0.68 +0.7 540,511 - MPMX19_05812 0.68 -0.3 540,511 - MPMX19_05812 0.68 +0.2 540,511 - MPMX19_05812 0.68 -0.8 540,511 - MPMX19_05812 0.68 -1.4 540,511 - MPMX19_05812 0.68 -0.8 540,511 - MPMX19_05812 0.68 -0.3 540,511 - MPMX19_05812 0.68 +0.1 540,633 + MPMX19_05812 0.83 -2.3 540,633 + MPMX19_05812 0.83 +0.5 540,633 + MPMX19_05812 0.83 -0.5 540,634 - MPMX19_05812 0.83 +0.7 540,634 - MPMX19_05812 0.83 -0.4 540,669 + MPMX19_05812 0.88 -1.3 540,670 - MPMX19_05812 0.88 -0.6 540,670 - MPMX19_05812 0.88 +0.2 540,693 + -1.0 540,693 + +0.9 540,693 + -1.1 540,694 - -0.5 540,694 - -0.5 540,694 - -1.2 540,694 - +1.1 540,741 + -0.5 540,741 + +0.1 540,741 + +0.0 540,741 + -0.8 540,741 + -0.2 540,741 + -0.1 540,742 - -0.5 540,742 - -0.7 540,797 + +0.4 540,797 + +0.2 540,798 - -0.2 540,798 - -0.3 540,803 + -0.5 540,803 + +0.8 540,803 + -0.4 540,803 + +1.2 540,804 - -0.8 540,804 - -0.4 540,804 - +0.7 540,804 - -0.5 540,804 - +0.2 540,882 + +0.3 540,882 + -2.1 540,882 + +0.2 540,882 + +0.5 540,882 + -0.1 540,882 + -0.1 540,882 + +0.8 540,882 + -0.4 540,882 + +0.6 540,883 - +0.1 540,883 - +0.5 540,883 - -0.2 540,883 - -0.2 540,883 - +0.6 540,883 - -0.1 540,883 - -0.2 540,883 - -0.0 540,883 - -0.9 540,883 - -0.5 540,883 - +0.4 540,883 - +0.9 540,883 - -0.4 540,883 - -0.7 540,883 - -2.1 540,883 - -1.7 540,883 - +1.1 540,883 - +0.2 540,883 - -0.6 540,883 - -0.8 540,883 - -0.1 541,110 + MPMX19_05813 0.35 +0.3 541,110 + MPMX19_05813 0.35 +0.8 541,111 - MPMX19_05813 0.35 -0.2 541,111 - MPMX19_05813 0.35 -1.5 541,111 - MPMX19_05813 0.35 +0.5 541,111 - MPMX19_05813 0.35 -2.1 541,143 + MPMX19_05813 0.38 -2.3 541,143 + MPMX19_05813 0.38 -1.8 541,143 + MPMX19_05813 0.38 -0.3 541,144 - MPMX19_05813 0.38 -0.9 541,686 + +0.9 541,686 + +0.3 541,686 + -0.3 541,686 + -1.0 541,687 - -1.5 541,687 - +1.2 541,687 - -1.9 541,687 - -0.5 541,687 - -0.6 541,773 + +0.7 541,773 + -0.3 541,773 + -1.5 541,773 + +0.2 541,773 + -0.4 541,773 + +0.7 541,773 + +0.1 541,773 + +0.1 541,773 + +0.5 541,773 + -0.5 541,773 + -2.2 541,773 + -0.3 541,774 - +0.3 541,774 - -0.1 541,774 - +0.4 541,774 - +0.1 541,774 - +0.1 541,774 - -0.7 541,774 - -1.5 541,774 - -1.1 542,035 + MPMX19_05814 0.18 -0.0 542,035 + MPMX19_05814 0.18 +0.5 542,473 + MPMX19_05814 0.52 -1.3 542,473 + MPMX19_05814 0.52 -0.2 542,473 + MPMX19_05814 0.52 -1.2 542,473 + MPMX19_05814 0.52 -0.2 542,474 - MPMX19_05814 0.52 +1.8 542,474 - MPMX19_05814 0.52 +0.3 542,474 - MPMX19_05814 0.52 +0.7 542,474 - MPMX19_05814 0.52 -0.2 542,474 - MPMX19_05814 0.52 +0.4 542,474 - MPMX19_05814 0.52 +0.2 542,474 - MPMX19_05814 0.52 +0.5 542,635 + MPMX19_05814 0.64 +1.1 542,635 + MPMX19_05814 0.64 -0.8 542,635 + MPMX19_05814 0.64 +0.8 542,635 + MPMX19_05814 0.64 -1.8 542,635 + MPMX19_05814 0.64 -0.7 542,635 + MPMX19_05814 0.64 -0.5 542,635 + MPMX19_05814 0.64 -0.7 542,635 + MPMX19_05814 0.64 +0.1 542,635 + MPMX19_05814 0.64 +0.5 542,635 + MPMX19_05814 0.64 -0.7 542,636 - MPMX19_05814 0.64 +0.5 542,636 - MPMX19_05814 0.64 +0.2 542,636 - MPMX19_05814 0.64 -1.5 542,636 - MPMX19_05814 0.64 -0.1 542,636 - MPMX19_05814 0.64 -0.1 542,636 - MPMX19_05814 0.64 -0.9 542,636 - MPMX19_05814 0.64 -0.5 542,636 - MPMX19_05814 0.64 -0.3 542,636 - MPMX19_05814 0.64 +0.2 542,636 - MPMX19_05814 0.64 -0.2
Or see this region's nucleotide sequence