Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05176

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05175 and MPMX19_05176 are separated by 38 nucleotidesMPMX19_05176 and MPMX19_05177 are separated by 27 nucleotidesMPMX19_05177 and MPMX19_05178 are separated by 7 nucleotides MPMX19_05175: MPMX19_05175 - hypothetical protein, at 678,508 to 679,524 _05175 MPMX19_05176: MPMX19_05176 - 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase, at 679,563 to 680,348 _05176 MPMX19_05177: MPMX19_05177 - Glyoxylate/hydroxypyruvate reductase A, at 680,376 to 681,335 _05177 MPMX19_05178: MPMX19_05178 - Alkanesulfonate monooxygenase, at 681,343 to 682,467 _05178 Position (kb) 679 680 681Strain fitness (log2 ratio) -2 -1 0 1at 678.596 kb on + strandat 678.596 kb on + strandat 678.596 kb on + strandat 678.596 kb on + strandat 678.707 kb on + strand, within MPMX19_05175at 678.707 kb on + strand, within MPMX19_05175at 678.707 kb on + strand, within MPMX19_05175at 678.707 kb on + strand, within MPMX19_05175at 678.707 kb on + strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.737 kb on + strand, within MPMX19_05175at 678.738 kb on - strand, within MPMX19_05175at 679.622 kb on - strandat 679.906 kb on + strand, within MPMX19_05176at 679.906 kb on + strand, within MPMX19_05176at 679.906 kb on + strand, within MPMX19_05176at 679.907 kb on - strand, within MPMX19_05176at 679.907 kb on - strand, within MPMX19_05176at 679.907 kb on - strand, within MPMX19_05176at 679.907 kb on - strand, within MPMX19_05176at 680.291 kb on - strandat 680.291 kb on - strandat 680.291 kb on - strandat 680.291 kb on - strandat 680.291 kb on - strandat 680.381 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.528 kb on - strand, within MPMX19_05177at 680.528 kb on - strand, within MPMX19_05177at 680.528 kb on - strand, within MPMX19_05177at 680.528 kb on - strand, within MPMX19_05177at 681.010 kb on + strand, within MPMX19_05177at 681.010 kb on + strand, within MPMX19_05177at 681.010 kb on + strand, within MPMX19_05177at 681.011 kb on - strand, within MPMX19_05177at 681.085 kb on + strand, within MPMX19_05177at 681.085 kb on + strand, within MPMX19_05177at 681.085 kb on + strand, within MPMX19_05177at 681.131 kb on + strand, within MPMX19_05177at 681.344 kb on + strandat 681.345 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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678,596 + +1.0
678,596 + -0.4
678,596 + -1.6
678,596 + +0.2
678,707 + MPMX19_05175 0.20 -0.4
678,707 + MPMX19_05175 0.20 +0.2
678,707 + MPMX19_05175 0.20 -1.5
678,707 + MPMX19_05175 0.20 +0.0
678,707 + MPMX19_05175 0.20 -1.1
678,708 - MPMX19_05175 0.20 -0.5
678,708 - MPMX19_05175 0.20 -0.6
678,708 - MPMX19_05175 0.20 +0.2
678,708 - MPMX19_05175 0.20 -0.1
678,708 - MPMX19_05175 0.20 -0.5
678,708 - MPMX19_05175 0.20 +0.4
678,737 + MPMX19_05175 0.23 -0.9
678,738 - MPMX19_05175 0.23 -0.6
679,622 - +0.3
679,906 + MPMX19_05176 0.44 +0.7
679,906 + MPMX19_05176 0.44 -0.6
679,906 + MPMX19_05176 0.44 +0.1
679,907 - MPMX19_05176 0.44 -2.5
679,907 - MPMX19_05176 0.44 -1.8
679,907 - MPMX19_05176 0.44 -1.2
679,907 - MPMX19_05176 0.44 +1.0
680,291 - +0.3
680,291 - -0.8
680,291 - -0.6
680,291 - -1.3
680,291 - +0.4
680,381 - +0.3
680,429 - -1.3
680,429 - -0.3
680,429 - +0.5
680,429 - -0.3
680,429 - -0.6
680,429 - +0.2
680,429 - +0.2
680,429 - -0.8
680,429 - -1.7
680,429 - -1.3
680,528 - MPMX19_05177 0.16 -0.2
680,528 - MPMX19_05177 0.16 -0.0
680,528 - MPMX19_05177 0.16 -0.2
680,528 - MPMX19_05177 0.16 +0.9
681,010 + MPMX19_05177 0.66 -1.1
681,010 + MPMX19_05177 0.66 +0.6
681,010 + MPMX19_05177 0.66 -2.0
681,011 - MPMX19_05177 0.66 +0.1
681,085 + MPMX19_05177 0.74 +0.0
681,085 + MPMX19_05177 0.74 -0.2
681,085 + MPMX19_05177 0.74 +0.6
681,131 + MPMX19_05177 0.79 +0.4
681,344 + +0.3
681,345 - -1.4

Or see this region's nucleotide sequence