Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04252

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04251 and MPMX19_04252 overlap by 4 nucleotidesMPMX19_04252 and MPMX19_04253 are separated by 274 nucleotides MPMX19_04251: MPMX19_04251 - C4-dicarboxylate transport transcriptional regulatory protein DctD, at 603,745 to 605,115 _04251 MPMX19_04252: MPMX19_04252 - C4-dicarboxylate transport sensor protein DctB, at 605,112 to 606,962 _04252 MPMX19_04253: MPMX19_04253 - Aerobic C4-dicarboxylate transport protein, at 607,237 to 608,568 _04253 Position (kb) 605 606 607Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 604.172 kb on + strand, within MPMX19_04251at 604.173 kb on - strand, within MPMX19_04251at 604.173 kb on - strand, within MPMX19_04251at 604.173 kb on - strand, within MPMX19_04251at 604.175 kb on + strand, within MPMX19_04251at 604.175 kb on + strand, within MPMX19_04251at 604.175 kb on + strand, within MPMX19_04251at 604.175 kb on + strand, within MPMX19_04251at 604.175 kb on + strand, within MPMX19_04251at 604.176 kb on - strand, within MPMX19_04251at 604.176 kb on - strand, within MPMX19_04251at 604.176 kb on - strand, within MPMX19_04251at 604.176 kb on - strand, within MPMX19_04251at 604.787 kb on + strand, within MPMX19_04251at 604.787 kb on + strand, within MPMX19_04251at 604.787 kb on + strand, within MPMX19_04251at 604.788 kb on - strand, within MPMX19_04251at 604.876 kb on + strand, within MPMX19_04251at 605.956 kb on + strand, within MPMX19_04252at 605.956 kb on + strand, within MPMX19_04252at 605.956 kb on + strand, within MPMX19_04252at 605.957 kb on - strand, within MPMX19_04252at 605.957 kb on - strand, within MPMX19_04252at 605.957 kb on - strand, within MPMX19_04252at 605.957 kb on - strand, within MPMX19_04252at 605.957 kb on - strand, within MPMX19_04252at 606.094 kb on + strand, within MPMX19_04252at 606.094 kb on + strand, within MPMX19_04252at 606.095 kb on - strand, within MPMX19_04252at 606.095 kb on - strand, within MPMX19_04252at 606.095 kb on - strand, within MPMX19_04252at 606.095 kb on - strand, within MPMX19_04252at 606.095 kb on - strand, within MPMX19_04252at 606.095 kb on - strand, within MPMX19_04252at 606.095 kb on - strand, within MPMX19_04252at 606.236 kb on - strand, within MPMX19_04252at 606.343 kb on + strand, within MPMX19_04252at 606.397 kb on + strand, within MPMX19_04252at 606.397 kb on + strand, within MPMX19_04252at 606.397 kb on + strand, within MPMX19_04252at 606.397 kb on + strand, within MPMX19_04252at 606.397 kb on + strand, within MPMX19_04252at 606.397 kb on + strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.472 kb on + strand, within MPMX19_04252at 606.482 kb on - strand, within MPMX19_04252at 606.562 kb on + strand, within MPMX19_04252at 606.562 kb on + strand, within MPMX19_04252at 606.562 kb on + strand, within MPMX19_04252at 606.562 kb on + strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.730 kb on + strand, within MPMX19_04252at 606.730 kb on + strand, within MPMX19_04252at 606.730 kb on + strand, within MPMX19_04252at 606.730 kb on + strand, within MPMX19_04252at 606.730 kb on + strand, within MPMX19_04252at 606.730 kb on + strand, within MPMX19_04252at 606.731 kb on - strand, within MPMX19_04252at 606.731 kb on - strand, within MPMX19_04252at 606.731 kb on - strand, within MPMX19_04252at 606.731 kb on - strand, within MPMX19_04252at 606.731 kb on - strand, within MPMX19_04252at 606.731 kb on - strand, within MPMX19_04252at 606.957 kb on - strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.366 kb on + strandat 607.366 kb on + strandat 607.366 kb on + strandat 607.366 kb on + strandat 607.366 kb on + strandat 607.366 kb on + strandat 607.366 kb on + strandat 607.367 kb on - strandat 607.367 kb on - strandat 607.367 kb on - strandat 607.367 kb on - strandat 607.367 kb on - strandat 607.367 kb on - strandat 607.367 kb on - strandat 607.525 kb on + strand, within MPMX19_04253at 607.525 kb on + strand, within MPMX19_04253at 607.525 kb on + strand, within MPMX19_04253at 607.525 kb on + strand, within MPMX19_04253at 607.525 kb on + strand, within MPMX19_04253at 607.526 kb on - strand, within MPMX19_04253at 607.526 kb on - strand, within MPMX19_04253at 607.526 kb on - strand, within MPMX19_04253at 607.526 kb on - strand, within MPMX19_04253at 607.526 kb on - strand, within MPMX19_04253at 607.645 kb on + strand, within MPMX19_04253at 607.645 kb on + strand, within MPMX19_04253at 607.645 kb on + strand, within MPMX19_04253at 607.645 kb on + strand, within MPMX19_04253at 607.645 kb on + strand, within MPMX19_04253at 607.646 kb on - strand, within MPMX19_04253at 607.646 kb on - strand, within MPMX19_04253at 607.646 kb on - strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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604,172 + MPMX19_04251 0.31 -0.0
604,173 - MPMX19_04251 0.31 -0.3
604,173 - MPMX19_04251 0.31 -1.0
604,173 - MPMX19_04251 0.31 -0.1
604,175 + MPMX19_04251 0.31 -0.5
604,175 + MPMX19_04251 0.31 -0.8
604,175 + MPMX19_04251 0.31 -1.7
604,175 + MPMX19_04251 0.31 -0.4
604,175 + MPMX19_04251 0.31 -0.6
604,176 - MPMX19_04251 0.31 +0.6
604,176 - MPMX19_04251 0.31 +0.4
604,176 - MPMX19_04251 0.31 -0.0
604,176 - MPMX19_04251 0.31 +0.1
604,787 + MPMX19_04251 0.76 -0.2
604,787 + MPMX19_04251 0.76 -0.4
604,787 + MPMX19_04251 0.76 -0.5
604,788 - MPMX19_04251 0.76 -0.2
604,876 + MPMX19_04251 0.82 +0.5
605,956 + MPMX19_04252 0.46 -0.3
605,956 + MPMX19_04252 0.46 +0.3
605,956 + MPMX19_04252 0.46 +1.5
605,957 - MPMX19_04252 0.46 -0.4
605,957 - MPMX19_04252 0.46 -0.9
605,957 - MPMX19_04252 0.46 -0.1
605,957 - MPMX19_04252 0.46 -0.5
605,957 - MPMX19_04252 0.46 +0.1
606,094 + MPMX19_04252 0.53 +1.5
606,094 + MPMX19_04252 0.53 +1.2
606,095 - MPMX19_04252 0.53 -0.2
606,095 - MPMX19_04252 0.53 +0.4
606,095 - MPMX19_04252 0.53 +1.2
606,095 - MPMX19_04252 0.53 +0.3
606,095 - MPMX19_04252 0.53 +1.2
606,095 - MPMX19_04252 0.53 +1.0
606,095 - MPMX19_04252 0.53 -0.1
606,236 - MPMX19_04252 0.61 -0.8
606,343 + MPMX19_04252 0.67 +0.4
606,397 + MPMX19_04252 0.69 +0.3
606,397 + MPMX19_04252 0.69 -2.4
606,397 + MPMX19_04252 0.69 +1.5
606,397 + MPMX19_04252 0.69 +0.1
606,397 + MPMX19_04252 0.69 -0.4
606,397 + MPMX19_04252 0.69 +0.4
606,398 - MPMX19_04252 0.69 +0.5
606,398 - MPMX19_04252 0.69 +0.8
606,398 - MPMX19_04252 0.69 +0.6
606,398 - MPMX19_04252 0.69 +0.3
606,398 - MPMX19_04252 0.69 -0.5
606,398 - MPMX19_04252 0.69 -0.7
606,398 - MPMX19_04252 0.69 -0.2
606,398 - MPMX19_04252 0.69 +0.6
606,398 - MPMX19_04252 0.69 +1.2
606,472 + MPMX19_04252 0.73 +0.7
606,482 - MPMX19_04252 0.74 -1.8
606,562 + MPMX19_04252 0.78 -0.1
606,562 + MPMX19_04252 0.78 -1.2
606,562 + MPMX19_04252 0.78 +0.4
606,562 + MPMX19_04252 0.78 +0.2
606,563 - MPMX19_04252 0.78 -1.8
606,563 - MPMX19_04252 0.78 -0.6
606,563 - MPMX19_04252 0.78 +1.0
606,563 - MPMX19_04252 0.78 +0.4
606,563 - MPMX19_04252 0.78 -0.1
606,563 - MPMX19_04252 0.78 -1.5
606,563 - MPMX19_04252 0.78 +0.4
606,563 - MPMX19_04252 0.78 +0.0
606,730 + MPMX19_04252 0.87 -2.3
606,730 + MPMX19_04252 0.87 -1.5
606,730 + MPMX19_04252 0.87 -0.7
606,730 + MPMX19_04252 0.87 -0.6
606,730 + MPMX19_04252 0.87 +1.0
606,730 + MPMX19_04252 0.87 -0.7
606,731 - MPMX19_04252 0.87 +0.1
606,731 - MPMX19_04252 0.87 +0.2
606,731 - MPMX19_04252 0.87 +1.0
606,731 - MPMX19_04252 0.87 +0.3
606,731 - MPMX19_04252 0.87 -1.8
606,731 - MPMX19_04252 0.87 -1.3
606,957 - +0.5
607,303 + +0.5
607,303 + +0.6
607,303 + +0.3
607,303 + -0.7
607,303 + -0.5
607,303 + +1.7
607,303 + -1.5
607,303 + -1.1
607,303 + +0.5
607,303 + -0.8
607,303 + +0.4
607,303 + -0.2
607,303 + -0.5
607,304 - +0.7
607,304 - -0.6
607,304 - +0.5
607,304 - +0.8
607,304 - -0.4
607,304 - +0.2
607,304 - -0.1
607,304 - +1.2
607,304 - +1.9
607,304 - -1.4
607,304 - -0.2
607,366 + +0.2
607,366 + -0.9
607,366 + +0.1
607,366 + -2.1
607,366 + -0.9
607,366 + +0.9
607,366 + -1.5
607,367 - +1.4
607,367 - +1.5
607,367 - +0.6
607,367 - +0.6
607,367 - -0.5
607,367 - +0.7
607,367 - -0.3
607,525 + MPMX19_04253 0.22 -0.1
607,525 + MPMX19_04253 0.22 -0.1
607,525 + MPMX19_04253 0.22 -3.1
607,525 + MPMX19_04253 0.22 -0.9
607,525 + MPMX19_04253 0.22 +0.4
607,526 - MPMX19_04253 0.22 -0.9
607,526 - MPMX19_04253 0.22 +1.5
607,526 - MPMX19_04253 0.22 +0.1
607,526 - MPMX19_04253 0.22 -0.9
607,526 - MPMX19_04253 0.22 -1.1
607,645 + MPMX19_04253 0.31 -0.5
607,645 + MPMX19_04253 0.31 -0.3
607,645 + MPMX19_04253 0.31 +0.6
607,645 + MPMX19_04253 0.31 -0.9
607,645 + MPMX19_04253 0.31 -2.2
607,646 - MPMX19_04253 0.31 -0.1
607,646 - MPMX19_04253 0.31 +1.8
607,646 - MPMX19_04253 0.31 +0.7
607,918 + MPMX19_04253 0.51 -0.2
607,918 + MPMX19_04253 0.51 +1.5
607,918 + MPMX19_04253 0.51 +0.5
607,918 + MPMX19_04253 0.51 -0.1
607,918 + MPMX19_04253 0.51 -0.7
607,918 + MPMX19_04253 0.51 +0.2
607,918 + MPMX19_04253 0.51 -0.8
607,918 + MPMX19_04253 0.51 +0.3
607,918 + MPMX19_04253 0.51 -0.6
607,918 + MPMX19_04253 0.51 +0.5
607,918 + MPMX19_04253 0.51 -1.3
607,919 - MPMX19_04253 0.51 -1.1
607,919 - MPMX19_04253 0.51 +0.3
607,919 - MPMX19_04253 0.51 -0.2
607,919 - MPMX19_04253 0.51 +2.0
607,919 - MPMX19_04253 0.51 -1.5
607,919 - MPMX19_04253 0.51 -0.1

Or see this region's nucleotide sequence