Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04204 and MPMX19_04205 overlap by 4 nucleotides MPMX19_04205 and MPMX19_04206 are separated by 39 nucleotides MPMX19_04206 and MPMX19_04207 are separated by 200 nucleotides
MPMX19_04204: MPMX19_04204 - D-alanine--D-alanyl carrier protein ligase, at 537,170 to 538,339
_04204
MPMX19_04205: MPMX19_04205 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 538,336 to 539,112
_04205
MPMX19_04206: MPMX19_04206 - 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 539,152 to 540,210
_04206
MPMX19_04207: MPMX19_04207 - hypothetical protein, at 540,411 to 542,273
_04207
Position (kb) 539
540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 538.291 kb on + strand at 538.292 kb on - strand at 538.813 kb on + strand, within MPMX19_04205 at 538.813 kb on + strand, within MPMX19_04205 at 538.814 kb on - strand, within MPMX19_04205 at 538.814 kb on - strand, within MPMX19_04205 at 538.814 kb on - strand, within MPMX19_04205 at 538.814 kb on - strand, within MPMX19_04205 at 538.831 kb on + strand, within MPMX19_04205 at 538.832 kb on - strand, within MPMX19_04205 at 538.832 kb on - strand, within MPMX19_04205 at 538.927 kb on + strand, within MPMX19_04205 at 538.928 kb on - strand, within MPMX19_04205 at 538.928 kb on - strand, within MPMX19_04205 at 538.928 kb on - strand, within MPMX19_04205 at 539.085 kb on + strand at 539.085 kb on + strand at 539.085 kb on + strand at 539.085 kb on + strand at 539.085 kb on + strand at 539.085 kb on + strand at 539.085 kb on + strand at 539.085 kb on + strand at 539.085 kb on + strand at 539.085 kb on + strand at 539.085 kb on + strand at 539.085 kb on + strand at 539.086 kb on - strand at 539.086 kb on - strand at 539.086 kb on - strand at 539.086 kb on - strand at 539.086 kb on - strand at 539.086 kb on - strand at 539.086 kb on - strand at 539.086 kb on - strand at 539.086 kb on - strand at 539.086 kb on - strand at 539.086 kb on - strand at 539.086 kb on - strand at 539.086 kb on - strand at 539.103 kb on + strand at 539.103 kb on + strand at 539.103 kb on + strand at 539.103 kb on + strand at 539.103 kb on + strand at 539.103 kb on + strand at 539.103 kb on + strand at 539.104 kb on - strand at 539.104 kb on - strand at 539.104 kb on - strand at 539.104 kb on - strand at 539.104 kb on - strand at 539.104 kb on - strand at 539.524 kb on + strand, within MPMX19_04206 at 539.524 kb on + strand, within MPMX19_04206 at 539.524 kb on + strand, within MPMX19_04206 at 539.524 kb on + strand, within MPMX19_04206 at 539.525 kb on - strand, within MPMX19_04206 at 539.525 kb on - strand, within MPMX19_04206 at 539.734 kb on + strand, within MPMX19_04206 at 539.734 kb on + strand, within MPMX19_04206 at 539.734 kb on + strand, within MPMX19_04206 at 539.734 kb on + strand, within MPMX19_04206 at 539.734 kb on + strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.822 kb on + strand, within MPMX19_04206 at 539.822 kb on + strand, within MPMX19_04206 at 539.823 kb on - strand, within MPMX19_04206 at 539.823 kb on - strand, within MPMX19_04206 at 540.275 kb on + strand at 540.275 kb on + strand at 540.275 kb on + strand at 540.276 kb on - strand at 540.276 kb on - strand at 540.338 kb on + strand at 540.338 kb on + strand at 540.338 kb on + strand at 540.339 kb on - strand at 540.339 kb on - strand at 540.339 kb on - strand at 540.339 kb on - strand at 540.339 kb on - strand at 540.407 kb on + strand at 540.407 kb on + strand at 540.407 kb on + strand at 540.408 kb on - strand at 540.408 kb on - strand at 540.408 kb on - strand at 540.426 kb on - strand at 540.816 kb on + strand, within MPMX19_04207 at 540.817 kb on - strand, within MPMX19_04207 at 540.817 kb on - strand, within MPMX19_04207 at 540.817 kb on - strand, within MPMX19_04207 at 540.946 kb on - strand, within MPMX19_04207 at 540.946 kb on - strand, within MPMX19_04207 at 540.946 kb on - strand, within MPMX19_04207 at 541.161 kb on + strand, within MPMX19_04207 at 541.161 kb on + strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 538,291 + +0.1 538,292 - -0.3 538,813 + MPMX19_04205 0.61 -2.1 538,813 + MPMX19_04205 0.61 -0.7 538,814 - MPMX19_04205 0.62 -0.8 538,814 - MPMX19_04205 0.62 -1.0 538,814 - MPMX19_04205 0.62 -1.7 538,814 - MPMX19_04205 0.62 +0.8 538,831 + MPMX19_04205 0.64 -0.1 538,832 - MPMX19_04205 0.64 +0.2 538,832 - MPMX19_04205 0.64 -1.2 538,927 + MPMX19_04205 0.76 -1.7 538,928 - MPMX19_04205 0.76 -1.2 538,928 - MPMX19_04205 0.76 +0.3 538,928 - MPMX19_04205 0.76 -1.5 539,085 + -1.3 539,085 + -1.1 539,085 + -2.3 539,085 + +1.9 539,085 + -2.2 539,085 + -1.5 539,085 + -3.2 539,085 + -1.5 539,085 + +0.0 539,085 + -2.1 539,085 + -0.5 539,085 + -0.9 539,086 - +0.9 539,086 - -0.4 539,086 - -2.0 539,086 - -0.8 539,086 - -1.7 539,086 - -1.1 539,086 - -0.1 539,086 - -1.7 539,086 - -2.0 539,086 - +1.3 539,086 - -2.5 539,086 - +0.4 539,086 - -1.3 539,103 + -2.8 539,103 + -0.8 539,103 + -2.1 539,103 + -0.8 539,103 + -0.8 539,103 + +1.5 539,103 + -1.1 539,104 - -0.5 539,104 - -1.9 539,104 - -2.2 539,104 - -0.5 539,104 - -2.9 539,104 - -0.2 539,524 + MPMX19_04206 0.35 -2.2 539,524 + MPMX19_04206 0.35 -1.5 539,524 + MPMX19_04206 0.35 -1.1 539,524 + MPMX19_04206 0.35 -1.8 539,525 - MPMX19_04206 0.35 -0.4 539,525 - MPMX19_04206 0.35 -1.7 539,734 + MPMX19_04206 0.55 -0.3 539,734 + MPMX19_04206 0.55 -0.5 539,734 + MPMX19_04206 0.55 -0.7 539,734 + MPMX19_04206 0.55 -2.2 539,734 + MPMX19_04206 0.55 -1.1 539,735 - MPMX19_04206 0.55 -1.4 539,735 - MPMX19_04206 0.55 -2.1 539,735 - MPMX19_04206 0.55 -2.1 539,735 - MPMX19_04206 0.55 -1.1 539,735 - MPMX19_04206 0.55 -1.0 539,735 - MPMX19_04206 0.55 +0.1 539,735 - MPMX19_04206 0.55 -1.7 539,735 - MPMX19_04206 0.55 -1.3 539,735 - MPMX19_04206 0.55 -1.1 539,735 - MPMX19_04206 0.55 -0.2 539,735 - MPMX19_04206 0.55 +0.0 539,735 - MPMX19_04206 0.55 -0.1 539,822 + MPMX19_04206 0.63 -0.5 539,822 + MPMX19_04206 0.63 -1.9 539,823 - MPMX19_04206 0.63 -1.8 539,823 - MPMX19_04206 0.63 -1.5 540,275 + -1.0 540,275 + +1.1 540,275 + +1.9 540,276 - -0.8 540,276 - +0.2 540,338 + -0.9 540,338 + -1.5 540,338 + -2.3 540,339 - -1.1 540,339 - -1.6 540,339 - -0.5 540,339 - -0.6 540,339 - -1.0 540,407 + -2.1 540,407 + -1.9 540,407 + -1.1 540,408 - -1.4 540,408 - +0.3 540,408 - -1.5 540,426 - -0.6 540,816 + MPMX19_04207 0.22 -1.9 540,817 - MPMX19_04207 0.22 -0.8 540,817 - MPMX19_04207 0.22 -0.5 540,817 - MPMX19_04207 0.22 -0.3 540,946 - MPMX19_04207 0.29 +0.9 540,946 - MPMX19_04207 0.29 -1.7 540,946 - MPMX19_04207 0.29 -0.6 541,161 + MPMX19_04207 0.40 -1.3 541,161 + MPMX19_04207 0.40 -1.1 541,162 - MPMX19_04207 0.40 -0.1 541,162 - MPMX19_04207 0.40 -1.2 541,162 - MPMX19_04207 0.40 -1.1 541,162 - MPMX19_04207 0.40 -0.7 541,162 - MPMX19_04207 0.40 -0.7 541,162 - MPMX19_04207 0.40 -1.2
Or see this region's nucleotide sequence