Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03997 and MPMX19_03998 are separated by 3 nucleotides MPMX19_03998 and MPMX19_03999 are separated by 102 nucleotides MPMX19_03999 and MPMX19_04000 are separated by 209 nucleotides
MPMX19_03997: MPMX19_03997 - C4-dicarboxylate TRAP transporter large permease protein DctM, at 292,094 to 293,395
_03997
MPMX19_03998: MPMX19_03998 - hypothetical protein, at 293,399 to 293,908
_03998
MPMX19_03999: MPMX19_03999 - hypothetical protein, at 294,011 to 295,045
_03999
MPMX19_04000: MPMX19_04000 - Flagellar motor switch protein FliG, at 295,255 to 296,277
_04000
Position (kb) 294
295
296 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.431 kb on - strand at 293.431 kb on - strand at 293.431 kb on - strand at 293.431 kb on - strand at 293.431 kb on - strand at 293.572 kb on - strand, within MPMX19_03998 at 293.572 kb on - strand, within MPMX19_03998 at 293.579 kb on + strand, within MPMX19_03998 at 293.581 kb on - strand, within MPMX19_03998 at 293.598 kb on + strand, within MPMX19_03998 at 293.598 kb on + strand, within MPMX19_03998 at 293.598 kb on + strand, within MPMX19_03998 at 293.598 kb on + strand, within MPMX19_03998 at 293.599 kb on - strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.611 kb on - strand, within MPMX19_03998 at 293.611 kb on - strand, within MPMX19_03998 at 293.611 kb on - strand, within MPMX19_03998 at 293.611 kb on - strand, within MPMX19_03998 at 293.611 kb on - strand, within MPMX19_03998 at 293.611 kb on - strand, within MPMX19_03998 at 293.764 kb on - strand, within MPMX19_03998 at 293.764 kb on - strand, within MPMX19_03998 at 294.013 kb on - strand at 294.013 kb on - strand at 294.318 kb on + strand, within MPMX19_03999 at 294.318 kb on + strand, within MPMX19_03999 at 294.319 kb on - strand, within MPMX19_03999 at 294.319 kb on - strand, within MPMX19_03999 at 294.321 kb on + strand, within MPMX19_03999 at 294.321 kb on + strand, within MPMX19_03999 at 294.322 kb on - strand, within MPMX19_03999 at 294.322 kb on - strand, within MPMX19_03999 at 294.322 kb on - strand, within MPMX19_03999 at 294.483 kb on + strand, within MPMX19_03999 at 294.483 kb on + strand, within MPMX19_03999 at 294.483 kb on + strand, within MPMX19_03999 at 294.483 kb on + strand, within MPMX19_03999 at 294.483 kb on + strand, within MPMX19_03999 at 294.483 kb on + strand, within MPMX19_03999 at 294.483 kb on + strand, within MPMX19_03999 at 294.484 kb on - strand, within MPMX19_03999 at 294.484 kb on - strand, within MPMX19_03999 at 294.484 kb on - strand, within MPMX19_03999 at 294.484 kb on - strand, within MPMX19_03999 at 294.484 kb on - strand, within MPMX19_03999 at 294.484 kb on - strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.570 kb on + strand, within MPMX19_03999 at 294.571 kb on - strand, within MPMX19_03999 at 294.571 kb on - strand, within MPMX19_03999 at 294.571 kb on - strand, within MPMX19_03999 at 294.571 kb on - strand, within MPMX19_03999 at 294.571 kb on - strand, within MPMX19_03999 at 294.612 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.637 kb on + strand, within MPMX19_03999 at 294.637 kb on + strand, within MPMX19_03999 at 294.637 kb on + strand, within MPMX19_03999 at 294.637 kb on + strand, within MPMX19_03999 at 294.638 kb on - strand, within MPMX19_03999 at 294.638 kb on - strand, within MPMX19_03999 at 294.638 kb on - strand, within MPMX19_03999 at 294.687 kb on + strand, within MPMX19_03999 at 294.687 kb on + strand, within MPMX19_03999 at 294.687 kb on + strand, within MPMX19_03999 at 294.687 kb on + strand, within MPMX19_03999 at 294.687 kb on + strand, within MPMX19_03999 at 294.688 kb on - strand, within MPMX19_03999 at 294.688 kb on - strand, within MPMX19_03999 at 294.688 kb on - strand, within MPMX19_03999 at 294.688 kb on - strand, within MPMX19_03999 at 295.231 kb on + strand at 295.259 kb on + strand at 295.259 kb on + strand at 295.260 kb on - strand at 295.260 kb on - strand at 295.260 kb on - strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.884 kb on - strand, within MPMX19_04000 at 295.898 kb on + strand, within MPMX19_04000 at 295.898 kb on + strand, within MPMX19_04000 at 295.898 kb on + strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 293,430 + +0.1 293,430 + -0.4 293,430 + +1.0 293,430 + +2.1 293,430 + -0.5 293,430 + -0.7 293,430 + +0.3 293,430 + -0.3 293,430 + -1.0 293,430 + -0.4 293,430 + -0.5 293,430 + -1.3 293,431 - +0.7 293,431 - +0.8 293,431 - +1.5 293,431 - +0.5 293,431 - -1.6 293,572 - MPMX19_03998 0.34 -1.4 293,572 - MPMX19_03998 0.34 +0.5 293,579 + MPMX19_03998 0.35 -2.0 293,581 - MPMX19_03998 0.36 -1.0 293,598 + MPMX19_03998 0.39 +1.5 293,598 + MPMX19_03998 0.39 +0.1 293,598 + MPMX19_03998 0.39 -1.3 293,598 + MPMX19_03998 0.39 -0.4 293,599 - MPMX19_03998 0.39 +0.5 293,610 + MPMX19_03998 0.41 -0.1 293,610 + MPMX19_03998 0.41 +0.7 293,610 + MPMX19_03998 0.41 -0.8 293,610 + MPMX19_03998 0.41 -1.1 293,610 + MPMX19_03998 0.41 -1.7 293,610 + MPMX19_03998 0.41 +1.5 293,610 + MPMX19_03998 0.41 +0.5 293,610 + MPMX19_03998 0.41 +0.5 293,611 - MPMX19_03998 0.42 -0.8 293,611 - MPMX19_03998 0.42 +0.1 293,611 - MPMX19_03998 0.42 -0.9 293,611 - MPMX19_03998 0.42 -0.3 293,611 - MPMX19_03998 0.42 -0.5 293,611 - MPMX19_03998 0.42 +0.3 293,764 - MPMX19_03998 0.72 -0.5 293,764 - MPMX19_03998 0.72 -0.8 294,013 - +0.3 294,013 - -1.3 294,318 + MPMX19_03999 0.30 +1.0 294,318 + MPMX19_03999 0.30 +0.5 294,319 - MPMX19_03999 0.30 -2.4 294,319 - MPMX19_03999 0.30 -1.3 294,321 + MPMX19_03999 0.30 +0.0 294,321 + MPMX19_03999 0.30 -0.3 294,322 - MPMX19_03999 0.30 -1.0 294,322 - MPMX19_03999 0.30 -0.6 294,322 - MPMX19_03999 0.30 -0.2 294,483 + MPMX19_03999 0.46 -1.5 294,483 + MPMX19_03999 0.46 +0.5 294,483 + MPMX19_03999 0.46 +1.0 294,483 + MPMX19_03999 0.46 -0.6 294,483 + MPMX19_03999 0.46 +1.0 294,483 + MPMX19_03999 0.46 -0.0 294,483 + MPMX19_03999 0.46 -0.8 294,484 - MPMX19_03999 0.46 -1.6 294,484 - MPMX19_03999 0.46 -0.6 294,484 - MPMX19_03999 0.46 -0.4 294,484 - MPMX19_03999 0.46 -1.5 294,484 - MPMX19_03999 0.46 -0.9 294,484 - MPMX19_03999 0.46 +0.1 294,540 + MPMX19_03999 0.51 +2.7 294,540 + MPMX19_03999 0.51 -0.6 294,540 + MPMX19_03999 0.51 +0.7 294,540 + MPMX19_03999 0.51 +0.2 294,540 + MPMX19_03999 0.51 -0.3 294,540 + MPMX19_03999 0.51 -0.3 294,540 + MPMX19_03999 0.51 -0.0 294,540 + MPMX19_03999 0.51 -0.4 294,540 + MPMX19_03999 0.51 +0.5 294,540 + MPMX19_03999 0.51 -0.5 294,540 + MPMX19_03999 0.51 -2.9 294,540 + MPMX19_03999 0.51 +0.5 294,540 + MPMX19_03999 0.51 +0.2 294,541 - MPMX19_03999 0.51 +0.1 294,541 - MPMX19_03999 0.51 -0.4 294,541 - MPMX19_03999 0.51 -0.6 294,541 - MPMX19_03999 0.51 -0.1 294,541 - MPMX19_03999 0.51 -0.9 294,541 - MPMX19_03999 0.51 -0.3 294,541 - MPMX19_03999 0.51 -0.7 294,541 - MPMX19_03999 0.51 -0.8 294,541 - MPMX19_03999 0.51 -0.3 294,541 - MPMX19_03999 0.51 -0.4 294,541 - MPMX19_03999 0.51 -1.0 294,541 - MPMX19_03999 0.51 +0.1 294,541 - MPMX19_03999 0.51 +0.0 294,541 - MPMX19_03999 0.51 +1.1 294,541 - MPMX19_03999 0.51 -1.3 294,541 - MPMX19_03999 0.51 -0.0 294,570 + MPMX19_03999 0.54 -0.1 294,571 - MPMX19_03999 0.54 -1.1 294,571 - MPMX19_03999 0.54 +0.1 294,571 - MPMX19_03999 0.54 -0.3 294,571 - MPMX19_03999 0.54 +0.0 294,571 - MPMX19_03999 0.54 -0.4 294,612 + MPMX19_03999 0.58 +2.0 294,630 + MPMX19_03999 0.60 +0.2 294,630 + MPMX19_03999 0.60 +0.2 294,630 + MPMX19_03999 0.60 -0.0 294,630 + MPMX19_03999 0.60 -1.7 294,630 + MPMX19_03999 0.60 -0.6 294,630 + MPMX19_03999 0.60 -0.0 294,630 + MPMX19_03999 0.60 -0.8 294,630 + MPMX19_03999 0.60 -1.1 294,630 + MPMX19_03999 0.60 -0.1 294,631 - MPMX19_03999 0.60 +0.5 294,631 - MPMX19_03999 0.60 -1.3 294,631 - MPMX19_03999 0.60 +0.7 294,631 - MPMX19_03999 0.60 +0.7 294,631 - MPMX19_03999 0.60 -1.3 294,631 - MPMX19_03999 0.60 -1.7 294,631 - MPMX19_03999 0.60 -0.9 294,631 - MPMX19_03999 0.60 +0.6 294,631 - MPMX19_03999 0.60 +0.6 294,631 - MPMX19_03999 0.60 +0.7 294,631 - MPMX19_03999 0.60 -1.5 294,631 - MPMX19_03999 0.60 +0.6 294,631 - MPMX19_03999 0.60 +0.7 294,631 - MPMX19_03999 0.60 -1.0 294,637 + MPMX19_03999 0.60 -1.3 294,637 + MPMX19_03999 0.60 +0.6 294,637 + MPMX19_03999 0.60 -1.3 294,637 + MPMX19_03999 0.60 -0.8 294,638 - MPMX19_03999 0.61 -0.1 294,638 - MPMX19_03999 0.61 -1.1 294,638 - MPMX19_03999 0.61 -0.5 294,687 + MPMX19_03999 0.65 -1.4 294,687 + MPMX19_03999 0.65 +1.5 294,687 + MPMX19_03999 0.65 -1.7 294,687 + MPMX19_03999 0.65 +0.1 294,687 + MPMX19_03999 0.65 -0.3 294,688 - MPMX19_03999 0.65 -0.7 294,688 - MPMX19_03999 0.65 +0.1 294,688 - MPMX19_03999 0.65 +1.2 294,688 - MPMX19_03999 0.65 -0.3 295,231 + -1.4 295,259 + +0.6 295,259 + -0.9 295,260 - -0.7 295,260 - +0.3 295,260 - -0.6 295,340 + -0.3 295,340 + -0.3 295,340 + -1.7 295,340 + -0.8 295,340 + -1.7 295,340 + -2.4 295,340 + -1.8 295,340 + -1.3 295,340 + -2.0 295,340 + -1.2 295,340 + -0.1 295,340 + -1.2 295,340 + -2.2 295,340 + +0.3 295,340 + +2.5 295,340 + -1.0 295,340 + -2.0 295,340 + -1.3 295,340 + -1.6 295,340 + -2.8 295,340 + -2.3 295,340 + -0.1 295,340 + -3.3 295,340 + -1.8 295,340 + -0.6 295,340 + -1.9 295,340 + -0.1 295,340 + -3.2 295,341 - -1.0 295,341 - -0.2 295,341 - -0.4 295,341 - -0.8 295,341 - -3.0 295,341 - -3.6 295,341 - -0.6 295,341 - -1.0 295,341 - -1.3 295,341 - -2.1 295,341 - -0.1 295,341 - -1.3 295,341 - -1.4 295,341 - -3.0 295,341 - -3.6 295,341 - -1.2 295,341 - -0.5 295,341 - -1.6 295,341 - -0.1 295,341 - -2.1 295,341 - -0.6 295,341 - -1.3 295,341 - -2.8 295,341 - -2.1 295,341 - -1.6 295,341 - -1.4 295,341 - +0.2 295,341 - -1.7 295,341 - -1.7 295,341 - -2.0 295,341 - +0.3 295,341 - -2.0 295,341 - -1.3 295,341 - -0.1 295,341 - -2.0 295,341 - -0.5 295,341 - -0.5 295,884 - MPMX19_04000 0.61 -0.5 295,898 + MPMX19_04000 0.63 -3.7 295,898 + MPMX19_04000 0.63 -1.1 295,898 + MPMX19_04000 0.63 -3.8 295,899 - MPMX19_04000 0.63 -0.8 295,899 - MPMX19_04000 0.63 -1.2 295,899 - MPMX19_04000 0.63 -1.2 295,899 - MPMX19_04000 0.63 -1.5 295,899 - MPMX19_04000 0.63 -0.1 295,899 - MPMX19_04000 0.63 -0.7 295,899 - MPMX19_04000 0.63 -1.3 295,899 - MPMX19_04000 0.63 +0.9
Or see this region's nucleotide sequence