Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03734

Experiment: NL-CCM_agar

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03732 and MPMX19_03733 are separated by 215 nucleotidesMPMX19_03733 and MPMX19_03734 are separated by 113 nucleotidesMPMX19_03734 and MPMX19_03735 are separated by 154 nucleotidesMPMX19_03735 and MPMX19_03736 are separated by 68 nucleotides MPMX19_03732: MPMX19_03732 - hypothetical protein, at 1,177,865 to 1,178,299 _03732 MPMX19_03733: MPMX19_03733 - hypothetical protein, at 1,178,515 to 1,178,850 _03733 MPMX19_03734: MPMX19_03734 - RutC family protein YjgH, at 1,178,964 to 1,179,362 _03734 MPMX19_03735: MPMX19_03735 - Transposon Tn10 TetC protein, at 1,179,517 to 1,180,113 _03735 MPMX19_03736: MPMX19_03736 - Cytochrome c2, at 1,180,182 to 1,180,568 _03736 Position (kb) 1178 1179 1180Strain fitness (log2 ratio) -2 -1 0 1 2at 1178.190 kb on + strand, within MPMX19_03732at 1178.190 kb on + strand, within MPMX19_03732at 1178.190 kb on + strand, within MPMX19_03732at 1178.190 kb on + strand, within MPMX19_03732at 1178.190 kb on + strand, within MPMX19_03732at 1178.190 kb on + strand, within MPMX19_03732at 1178.190 kb on + strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.312 kb on + strandat 1178.312 kb on + strandat 1178.313 kb on - strandat 1178.313 kb on - strandat 1178.349 kb on - strandat 1179.302 kb on - strand, within MPMX19_03734at 1179.302 kb on - strand, within MPMX19_03734at 1179.316 kb on + strand, within MPMX19_03734at 1179.429 kb on - strandat 1179.491 kb on + strandat 1179.492 kb on - strandat 1179.664 kb on + strand, within MPMX19_03735at 1179.664 kb on + strand, within MPMX19_03735at 1179.665 kb on - strand, within MPMX19_03735at 1179.665 kb on - strand, within MPMX19_03735at 1179.665 kb on - strand, within MPMX19_03735at 1179.802 kb on + strand, within MPMX19_03735at 1179.802 kb on + strand, within MPMX19_03735at 1179.802 kb on + strand, within MPMX19_03735at 1179.802 kb on + strand, within MPMX19_03735at 1179.803 kb on - strand, within MPMX19_03735at 1179.803 kb on - strand, within MPMX19_03735at 1179.803 kb on - strand, within MPMX19_03735at 1179.803 kb on - strand, within MPMX19_03735at 1179.803 kb on - strand, within MPMX19_03735at 1179.809 kb on - strand, within MPMX19_03735at 1180.184 kb on - strandat 1180.294 kb on + strand, within MPMX19_03736at 1180.294 kb on + strand, within MPMX19_03736at 1180.294 kb on + strand, within MPMX19_03736at 1180.294 kb on + strand, within MPMX19_03736at 1180.294 kb on + strand, within MPMX19_03736at 1180.294 kb on + strand, within MPMX19_03736at 1180.294 kb on + strand, within MPMX19_03736at 1180.294 kb on + strand, within MPMX19_03736at 1180.294 kb on + strand, within MPMX19_03736at 1180.295 kb on - strand, within MPMX19_03736at 1180.295 kb on - strand, within MPMX19_03736at 1180.295 kb on - strand, within MPMX19_03736at 1180.295 kb on - strand, within MPMX19_03736at 1180.295 kb on - strand, within MPMX19_03736at 1180.295 kb on - strand, within MPMX19_03736at 1180.295 kb on - strand, within MPMX19_03736at 1180.295 kb on - strand, within MPMX19_03736at 1180.324 kb on + strand, within MPMX19_03736at 1180.324 kb on + strand, within MPMX19_03736at 1180.324 kb on + strand, within MPMX19_03736at 1180.324 kb on + strand, within MPMX19_03736at 1180.324 kb on + strand, within MPMX19_03736at 1180.324 kb on + strand, within MPMX19_03736at 1180.325 kb on - strand, within MPMX19_03736at 1180.325 kb on - strand, within MPMX19_03736at 1180.325 kb on - strand, within MPMX19_03736at 1180.325 kb on - strand, within MPMX19_03736at 1180.325 kb on - strand, within MPMX19_03736at 1180.351 kb on + strand, within MPMX19_03736at 1180.351 kb on + strand, within MPMX19_03736at 1180.352 kb on - strand, within MPMX19_03736at 1180.352 kb on - strand, within MPMX19_03736

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
remove
1,178,190 + MPMX19_03732 0.75 -2.0
1,178,190 + MPMX19_03732 0.75 -1.3
1,178,190 + MPMX19_03732 0.75 +0.4
1,178,190 + MPMX19_03732 0.75 +0.0
1,178,190 + MPMX19_03732 0.75 +1.2
1,178,190 + MPMX19_03732 0.75 +1.8
1,178,190 + MPMX19_03732 0.75 +0.8
1,178,191 - MPMX19_03732 0.75 -0.4
1,178,191 - MPMX19_03732 0.75 -2.2
1,178,191 - MPMX19_03732 0.75 +0.7
1,178,191 - MPMX19_03732 0.75 +0.4
1,178,191 - MPMX19_03732 0.75 +0.6
1,178,191 - MPMX19_03732 0.75 -0.0
1,178,191 - MPMX19_03732 0.75 -0.8
1,178,191 - MPMX19_03732 0.75 +0.4
1,178,191 - MPMX19_03732 0.75 -1.0
1,178,312 + -1.3
1,178,312 + +1.2
1,178,313 - +0.5
1,178,313 - +0.1
1,178,349 - +0.8
1,179,302 - MPMX19_03734 0.85 +0.3
1,179,302 - MPMX19_03734 0.85 -2.2
1,179,316 + MPMX19_03734 0.88 -1.1
1,179,429 - +0.4
1,179,491 + -1.2
1,179,492 - -0.4
1,179,664 + MPMX19_03735 0.25 +0.3
1,179,664 + MPMX19_03735 0.25 -1.2
1,179,665 - MPMX19_03735 0.25 -2.0
1,179,665 - MPMX19_03735 0.25 -0.8
1,179,665 - MPMX19_03735 0.25 +0.8
1,179,802 + MPMX19_03735 0.48 -1.0
1,179,802 + MPMX19_03735 0.48 -0.4
1,179,802 + MPMX19_03735 0.48 -1.6
1,179,802 + MPMX19_03735 0.48 -2.4
1,179,803 - MPMX19_03735 0.48 -0.1
1,179,803 - MPMX19_03735 0.48 -0.2
1,179,803 - MPMX19_03735 0.48 -0.4
1,179,803 - MPMX19_03735 0.48 -1.2
1,179,803 - MPMX19_03735 0.48 -0.2
1,179,809 - MPMX19_03735 0.49 +1.1
1,180,184 - -1.1
1,180,294 + MPMX19_03736 0.29 -0.4
1,180,294 + MPMX19_03736 0.29 -0.2
1,180,294 + MPMX19_03736 0.29 -1.9
1,180,294 + MPMX19_03736 0.29 -2.5
1,180,294 + MPMX19_03736 0.29 -0.8
1,180,294 + MPMX19_03736 0.29 -0.7
1,180,294 + MPMX19_03736 0.29 -1.3
1,180,294 + MPMX19_03736 0.29 -0.6
1,180,294 + MPMX19_03736 0.29 -0.2
1,180,295 - MPMX19_03736 0.29 +0.7
1,180,295 - MPMX19_03736 0.29 +0.2
1,180,295 - MPMX19_03736 0.29 +0.2
1,180,295 - MPMX19_03736 0.29 -0.9
1,180,295 - MPMX19_03736 0.29 +0.4
1,180,295 - MPMX19_03736 0.29 -0.2
1,180,295 - MPMX19_03736 0.29 +0.8
1,180,295 - MPMX19_03736 0.29 -1.4
1,180,324 + MPMX19_03736 0.37 -0.2
1,180,324 + MPMX19_03736 0.37 +0.3
1,180,324 + MPMX19_03736 0.37 -1.7
1,180,324 + MPMX19_03736 0.37 -0.3
1,180,324 + MPMX19_03736 0.37 +0.0
1,180,324 + MPMX19_03736 0.37 +0.0
1,180,325 - MPMX19_03736 0.37 -0.2
1,180,325 - MPMX19_03736 0.37 -0.2
1,180,325 - MPMX19_03736 0.37 +1.4
1,180,325 - MPMX19_03736 0.37 -0.9
1,180,325 - MPMX19_03736 0.37 +0.8
1,180,351 + MPMX19_03736 0.44 +0.2
1,180,351 + MPMX19_03736 0.44 +0.4
1,180,352 - MPMX19_03736 0.44 -1.7
1,180,352 - MPMX19_03736 0.44 -0.1

Or see this region's nucleotide sequence