Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02448 and MPMX19_02449 are separated by 37 nucleotides MPMX19_02449 and MPMX19_02450 are separated by 152 nucleotides
MPMX19_02448: MPMX19_02448 - Glutamyl-tRNA reductase, at 2,568,780 to 2,570,111
_02448
MPMX19_02449: MPMX19_02449 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin), at 2,570,149 to 2,571,318
_02449
MPMX19_02450: MPMX19_02450 - hypothetical protein, at 2,571,471 to 2,572,727
_02450
Position (kb)
2570
2571
2572 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2570.096 kb on - strand at 2570.096 kb on - strand at 2570.096 kb on - strand at 2570.150 kb on + strand at 2570.151 kb on - strand at 2570.151 kb on - strand at 2570.151 kb on - strand at 2570.151 kb on - strand at 2570.151 kb on - strand at 2570.151 kb on - strand at 2570.151 kb on - strand at 2570.151 kb on - strand at 2570.151 kb on - strand at 2571.366 kb on - strand at 2571.366 kb on - strand at 2571.480 kb on + strand at 2571.480 kb on + strand at 2571.480 kb on + strand at 2571.480 kb on + strand at 2571.480 kb on + strand at 2571.480 kb on + strand at 2571.480 kb on + strand at 2571.480 kb on + strand at 2571.480 kb on + strand at 2571.480 kb on + strand at 2571.480 kb on + strand at 2571.480 kb on + strand at 2571.480 kb on + strand at 2571.480 kb on + strand at 2571.480 kb on + strand at 2571.480 kb on + strand at 2571.481 kb on - strand at 2571.481 kb on - strand at 2571.481 kb on - strand at 2571.481 kb on - strand at 2571.481 kb on - strand at 2571.481 kb on - strand at 2571.481 kb on - strand at 2571.481 kb on - strand at 2571.481 kb on - strand at 2571.481 kb on - strand at 2571.481 kb on - strand at 2571.481 kb on - strand at 2571.481 kb on - strand at 2571.481 kb on - strand at 2571.481 kb on - strand at 2571.629 kb on + strand, within MPMX19_02450 at 2571.629 kb on + strand, within MPMX19_02450 at 2571.629 kb on + strand, within MPMX19_02450 at 2571.630 kb on - strand, within MPMX19_02450 at 2571.630 kb on - strand, within MPMX19_02450 at 2571.630 kb on - strand, within MPMX19_02450 at 2571.742 kb on + strand, within MPMX19_02450 at 2571.742 kb on + strand, within MPMX19_02450 at 2571.742 kb on + strand, within MPMX19_02450 at 2571.742 kb on + strand, within MPMX19_02450 at 2571.742 kb on + strand, within MPMX19_02450 at 2571.742 kb on + strand, within MPMX19_02450 at 2571.742 kb on + strand, within MPMX19_02450 at 2571.743 kb on - strand, within MPMX19_02450 at 2571.743 kb on - strand, within MPMX19_02450 at 2571.743 kb on - strand, within MPMX19_02450 at 2571.743 kb on - strand, within MPMX19_02450 at 2571.743 kb on - strand, within MPMX19_02450 at 2571.743 kb on - strand, within MPMX19_02450 at 2571.743 kb on - strand, within MPMX19_02450 at 2571.743 kb on - strand, within MPMX19_02450 at 2571.743 kb on - strand, within MPMX19_02450 at 2571.986 kb on + strand, within MPMX19_02450 at 2572.082 kb on + strand, within MPMX19_02450 at 2572.082 kb on + strand, within MPMX19_02450 at 2572.082 kb on + strand, within MPMX19_02450 at 2572.082 kb on + strand, within MPMX19_02450 at 2572.082 kb on + strand, within MPMX19_02450 at 2572.082 kb on + strand, within MPMX19_02450 at 2572.083 kb on - strand, within MPMX19_02450 at 2572.083 kb on - strand, within MPMX19_02450 at 2572.083 kb on - strand, within MPMX19_02450 at 2572.083 kb on - strand, within MPMX19_02450 at 2572.083 kb on - strand, within MPMX19_02450 at 2572.083 kb on - strand, within MPMX19_02450 at 2572.083 kb on - strand, within MPMX19_02450
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 2,570,096 - -0.8 2,570,096 - +0.6 2,570,096 - -0.1 2,570,150 + -0.7 2,570,151 - -1.3 2,570,151 - +0.9 2,570,151 - -0.9 2,570,151 - -0.1 2,570,151 - +0.5 2,570,151 - -2.3 2,570,151 - -0.9 2,570,151 - -0.7 2,570,151 - +0.3 2,571,366 - -1.1 2,571,366 - +0.0 2,571,480 + -0.6 2,571,480 + +0.2 2,571,480 + -1.8 2,571,480 + -0.6 2,571,480 + -1.5 2,571,480 + +1.1 2,571,480 + -0.5 2,571,480 + -0.7 2,571,480 + -0.1 2,571,480 + -0.7 2,571,480 + +0.2 2,571,480 + -0.5 2,571,480 + +0.3 2,571,480 + +0.3 2,571,480 + +1.0 2,571,480 + -0.3 2,571,481 - -0.2 2,571,481 - +2.0 2,571,481 - -0.5 2,571,481 - -0.2 2,571,481 - +0.6 2,571,481 - -1.5 2,571,481 - +0.5 2,571,481 - -0.2 2,571,481 - +0.1 2,571,481 - -1.8 2,571,481 - +0.6 2,571,481 - -2.6 2,571,481 - -0.2 2,571,481 - -0.5 2,571,481 - +0.3 2,571,629 + MPMX19_02450 0.13 -1.2 2,571,629 + MPMX19_02450 0.13 -0.4 2,571,629 + MPMX19_02450 0.13 +0.2 2,571,630 - MPMX19_02450 0.13 -0.8 2,571,630 - MPMX19_02450 0.13 -1.7 2,571,630 - MPMX19_02450 0.13 -0.3 2,571,742 + MPMX19_02450 0.22 +0.6 2,571,742 + MPMX19_02450 0.22 -2.6 2,571,742 + MPMX19_02450 0.22 -0.4 2,571,742 + MPMX19_02450 0.22 -2.2 2,571,742 + MPMX19_02450 0.22 -2.1 2,571,742 + MPMX19_02450 0.22 +0.9 2,571,742 + MPMX19_02450 0.22 -1.0 2,571,743 - MPMX19_02450 0.22 -1.8 2,571,743 - MPMX19_02450 0.22 -2.1 2,571,743 - MPMX19_02450 0.22 -0.1 2,571,743 - MPMX19_02450 0.22 +0.1 2,571,743 - MPMX19_02450 0.22 -0.4 2,571,743 - MPMX19_02450 0.22 -1.7 2,571,743 - MPMX19_02450 0.22 -0.9 2,571,743 - MPMX19_02450 0.22 -0.2 2,571,743 - MPMX19_02450 0.22 -0.6 2,571,986 + MPMX19_02450 0.41 +1.0 2,572,082 + MPMX19_02450 0.49 -0.7 2,572,082 + MPMX19_02450 0.49 +1.0 2,572,082 + MPMX19_02450 0.49 -1.5 2,572,082 + MPMX19_02450 0.49 +0.4 2,572,082 + MPMX19_02450 0.49 -0.3 2,572,082 + MPMX19_02450 0.49 +2.2 2,572,083 - MPMX19_02450 0.49 +1.2 2,572,083 - MPMX19_02450 0.49 -1.8 2,572,083 - MPMX19_02450 0.49 -0.2 2,572,083 - MPMX19_02450 0.49 -1.2 2,572,083 - MPMX19_02450 0.49 -1.9 2,572,083 - MPMX19_02450 0.49 -0.7 2,572,083 - MPMX19_02450 0.49 -0.1
Or see this region's nucleotide sequence