Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02044

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NL-CCM_agar
				remove
2,135,513	+	MPMX19_02043	0.32	-2.1
2,135,689	+	MPMX19_02043	0.61	-0.7
2,135,689	+	MPMX19_02043	0.61	+2.7
2,135,689	+	MPMX19_02043	0.61	+0.0
2,135,689	+	MPMX19_02043	0.61	+0.1
2,135,689	+	MPMX19_02043	0.61	+1.1
2,135,689	+	MPMX19_02043	0.61	-0.2
2,135,689	+	MPMX19_02043	0.61	+0.1
2,135,689	+	MPMX19_02043	0.61	-1.3
2,135,689	+	MPMX19_02043	0.61	+0.9
2,135,689	+	MPMX19_02043	0.61	-0.2
2,135,689	+	MPMX19_02043	0.61	-0.2
2,135,690	-	MPMX19_02043	0.62	-2.4
2,135,690	-	MPMX19_02043	0.62	+0.5
2,135,690	-	MPMX19_02043	0.62	+0.6
2,135,690	-	MPMX19_02043	0.62	-1.5
2,135,690	-	MPMX19_02043	0.62	+0.4
2,135,690	-	MPMX19_02043	0.62	-1.5
2,135,690	-	MPMX19_02043	0.62	-0.3
2,135,690	-	MPMX19_02043	0.62	-1.7
2,135,690	-	MPMX19_02043	0.62	-0.2
2,135,710	+	MPMX19_02043	0.65	+0.1
2,135,711	-	MPMX19_02043	0.65	+0.2
2,135,791	+	MPMX19_02043	0.78	-0.5
2,135,791	+	MPMX19_02043	0.78	-0.8
2,135,791	+	MPMX19_02043	0.78	+1.5
2,135,791	+	MPMX19_02043	0.78	+0.5
2,135,791	+	MPMX19_02043	0.78	-1.1
2,135,791	+	MPMX19_02043	0.78	-1.1
2,135,791	+	MPMX19_02043	0.78	-0.2
2,135,791	+	MPMX19_02043	0.78	+0.2
2,135,791	+	MPMX19_02043	0.78	+1.1
2,135,792	-	MPMX19_02043	0.78	+0.1
2,135,792	-	MPMX19_02043	0.78	+0.5
2,135,792	-	MPMX19_02043	0.78	-0.5
2,135,792	-	MPMX19_02043	0.78	+0.3
2,135,792	-	MPMX19_02043	0.78	+2.5
2,135,857	+	MPMX19_02043	0.89	+0.5
2,135,857	+	MPMX19_02043	0.89	+0.8
2,135,858	-	MPMX19_02043	0.89	-0.2
2,135,858	-	MPMX19_02043	0.89	+0.5
2,135,858	-	MPMX19_02043	0.89	-1.4
2,135,953	+			-1.1
2,135,953	+			-0.6
2,135,953	+			+0.4
2,135,953	+			+0.3
2,135,953	+			+0.2
2,135,953	+			+0.7
2,135,953	+			-1.7
2,135,953	+			-0.3
2,135,954	-			+0.5
2,135,954	-			+0.1
2,135,954	-			-0.3
2,135,955	+			-1.7
2,135,955	+			+0.9
2,135,955	+			-1.8
2,135,955	+			-0.9
2,135,955	+			-2.2
2,135,955	+			+0.5
2,135,955	+			-0.7
2,135,955	+			+0.3
2,135,955	+			-1.2
2,135,955	+			+0.2
2,135,955	+			-0.1
2,135,955	+			+0.6
2,135,955	+			-0.1
2,135,955	+			-1.3
2,135,955	+			-1.5
2,135,955	+			+0.5
2,135,955	+			+0.4
2,135,956	-			-0.3
2,135,956	-			+0.4
2,135,956	-			+3.5
2,135,956	-			+0.5
2,135,956	-			-0.3
2,135,956	-			-0.5
2,135,956	-			+0.8
2,135,956	-			+0.5
2,135,956	-			+0.8
2,136,057	-			-1.7
2,136,060	+			+0.9
2,136,061	-			-0.0
2,136,093	+			-0.4
2,136,093	+			-1.1
2,136,094	-			-1.5
2,136,094	-			-1.5
2,136,099	+			+0.9
2,136,125	+			-0.5
2,136,127	+			-0.3
2,136,222	+			+0.7
2,136,222	+			-0.6
2,136,222	+			-1.2
2,136,223	-			+0.1
2,136,223	-			+0.1
2,136,223	-			+0.0
2,136,265	+			+0.9
2,136,265	+			+0.9
2,136,265	+			+0.4
2,136,265	+			-0.0
2,136,265	+			-0.9
2,136,265	+			+0.7
2,136,265	+			-0.4
2,136,266	-			-0.6
2,136,266	-			+0.8
2,136,266	-			+0.1
2,136,266	-			-0.4
2,136,751	+	MPMX19_02044	0.54	-0.2
2,136,752	-	MPMX19_02044	0.55	-0.1
2,136,752	-	MPMX19_02044	0.55	+0.6
2,136,752	-	MPMX19_02044	0.55	-1.1
2,136,752	-	MPMX19_02044	0.55	-0.4
2,136,752	-	MPMX19_02044	0.55	-0.3
2,136,889	+	MPMX19_02044	0.68	-0.1
2,136,889	+	MPMX19_02044	0.68	+0.2
2,136,889	+	MPMX19_02044	0.68	-0.5
2,136,890	-	MPMX19_02044	0.68	-1.2
2,136,890	-	MPMX19_02044	0.68	-0.6
2,136,890	-	MPMX19_02044	0.68	-0.1
2,136,890	-	MPMX19_02044	0.68	-1.1
2,136,890	-	MPMX19_02044	0.68	-2.1
2,136,890	-	MPMX19_02044	0.68	+0.9
2,136,890	-	MPMX19_02044	0.68	+1.5
2,136,890	-	MPMX19_02044	0.68	+0.7
2,136,895	+	MPMX19_02044	0.68	+0.1
2,136,895	+	MPMX19_02044	0.68	-0.4
2,136,895	+	MPMX19_02044	0.68	+0.4
2,136,895	+	MPMX19_02044	0.68	-1.1
2,136,895	+	MPMX19_02044	0.68	-0.6
2,136,895	+	MPMX19_02044	0.68	-0.5
2,136,895	+	MPMX19_02044	0.68	-1.3
2,136,895	+	MPMX19_02044	0.68	-0.8
2,136,895	+	MPMX19_02044	0.68	+0.2
2,136,895	+	MPMX19_02044	0.68	-0.7
2,136,895	+	MPMX19_02044	0.68	-0.2
2,136,895	+	MPMX19_02044	0.68	+0.5
2,136,895	+	MPMX19_02044	0.68	+1.0
2,136,895	+	MPMX19_02044	0.68	-0.8
2,136,895	+	MPMX19_02044	0.68	+0.2
2,136,895	+	MPMX19_02044	0.68	+0.3
2,136,895	+	MPMX19_02044	0.68	+0.5
2,136,896	-	MPMX19_02044	0.68	-0.3
2,136,896	-	MPMX19_02044	0.68	-0.3
2,136,896	-	MPMX19_02044	0.68	-0.6
2,136,896	-	MPMX19_02044	0.68	-1.1
2,136,896	-	MPMX19_02044	0.68	-1.1
2,136,896	-	MPMX19_02044	0.68	-1.2
2,136,896	-	MPMX19_02044	0.68	+0.8
2,136,896	-	MPMX19_02044	0.68	-0.6
2,136,896	-	MPMX19_02044	0.68	+0.2
2,136,896	-	MPMX19_02044	0.68	-0.6
2,136,896	-	MPMX19_02044	0.68	+0.0
2,136,896	-	MPMX19_02044	0.68	-0.8
2,136,896	-	MPMX19_02044	0.68	-1.1
2,136,896	-	MPMX19_02044	0.68	-0.9
2,136,896	-	MPMX19_02044	0.68	+1.0
2,136,896	-	MPMX19_02044	0.68	-0.6
2,136,896	-	MPMX19_02044	0.68	+0.5
2,136,896	-	MPMX19_02044	0.68	-0.1
2,136,896	-	MPMX19_02044	0.68	-0.7
2,136,967	+	MPMX19_02044	0.75	-0.5
2,136,967	+	MPMX19_02044	0.75	-0.1
2,136,967	+	MPMX19_02044	0.75	-0.9
2,136,967	+	MPMX19_02044	0.75	+0.1
2,136,967	+	MPMX19_02044	0.75	-1.1
2,136,967	+	MPMX19_02044	0.75	-0.8
2,136,967	+	MPMX19_02044	0.75	-1.2
2,136,968	-	MPMX19_02044	0.75	-1.1
2,136,968	-	MPMX19_02044	0.75	-2.1
2,136,968	-	MPMX19_02044	0.75	-0.8
2,136,968	-	MPMX19_02044	0.75	+0.4
2,136,968	-	MPMX19_02044	0.75	+0.9
2,136,968	-	MPMX19_02044	0.75	-1.2
2,136,968	-	MPMX19_02044	0.75	-2.2
2,136,968	-	MPMX19_02044	0.75	-0.2
2,136,968	-	MPMX19_02044	0.75	-1.1
2,137,204	+			-0.5
2,137,204	+			+0.8
2,137,204	+			-0.8
2,137,204	+			+0.4
2,137,204	+			-0.2
2,137,204	+			-1.8
2,137,205	-			+0.3
2,137,205	-			-0.7
2,137,205	-			+0.6
2,137,205	-			-0.7
2,137,205	-			+1.2
2,137,261	+			+1.0
2,137,263	+			-0.0
2,137,301	+			-0.2
2,137,302	-			-0.4
2,137,353	+			-0.1
2,137,353	+			-0.3
2,137,353	+			-0.7
2,137,353	+			+0.5
2,137,353	+			-0.3
2,137,353	+			-0.3
2,137,353	+			-1.1
2,137,353	+			-0.2
2,137,353	+			-0.7
2,137,353	+			+0.5
2,137,353	+			+0.5
2,137,354	-			-0.7
2,137,354	-			+0.1
2,137,354	-			-0.6
2,137,354	-			+1.0
2,137,354	-			+0.7
2,137,354	-			+0.2
2,137,354	-			+0.5
2,137,428	+			-0.7
2,137,428	+			-1.1
2,137,428	+			-0.0
2,137,428	+			-0.8
2,137,428	+			+0.4
2,137,429	-			+0.8
2,137,429	-			+0.8
2,137,603	+			+0.0
2,137,603	+			+0.8
2,137,603	+			+0.4
2,137,603	+			+0.8
2,137,603	+			+0.2
2,137,603	+			+0.2
2,137,603	+			+0.1
2,137,603	+			+0.2
2,137,603	+			-0.1
2,137,603	+			-0.2
2,137,603	+			-0.8
2,137,603	+			+0.3
2,137,603	+			+1.1
2,137,603	+			+1.8
2,137,603	+			-0.8
2,137,603	+			-1.3
2,137,603	+			+0.1
2,137,604	-			+0.2
2,137,604	-			-0.3
2,137,604	-			-0.3
2,137,683	+			-0.5
2,137,683	+			-1.3
2,137,683	+			-0.3
2,137,683	+			-0.1
2,137,683	+			+0.1
2,137,683	+			+0.6
2,137,683	+			+0.1
2,137,683	+			+0.7
2,137,683	+			+0.7
2,137,683	+			-0.5
2,137,683	+			+0.3
2,137,683	+			-0.3
2,137,683	+			-0.3
2,137,683	+			-0.5
2,137,683	+			-1.5
2,137,683	+			-0.7
2,137,683	+			-1.9
2,137,683	+			+1.0
2,137,683	+			-0.8
2,137,684	-			-2.1
2,137,684	-			+0.5
2,137,684	-			-0.2
2,137,684	-			-0.1
2,137,684	-			+1.5
2,137,684	-			+0.5
2,137,684	-			-0.7
2,137,684	-			-1.5
2,137,684	-			-1.7
2,137,684	-			+0.1
2,137,684	-			+0.5
2,137,684	-			-1.3
2,137,684	-			+0.1
2,137,684	-			-1.3
2,137,684	-			+0.8
2,137,689	+			-0.9
2,137,690	-			-0.2
2,137,690	-			+1.0
2,137,690	-			+0.3
2,137,690	-			+0.4
2,137,690	-			-2.7
2,137,690	-			+0.8
2,137,690	-			+0.1
2,137,690	-			+1.0
2,138,031	+	MPMX19_02045	0.15	-0.3
2,138,032	-	MPMX19_02045	0.15	+1.0
2,138,097	+	MPMX19_02045	0.18	-1.1
2,138,098	-	MPMX19_02045	0.18	+0.2
2,138,098	-	MPMX19_02045	0.18	-0.5
2,138,187	+	MPMX19_02045	0.21	-0.2
2,138,188	-	MPMX19_02045	0.21	-0.8
2,138,188	-	MPMX19_02045	0.21	-1.2
2,138,188	-	MPMX19_02045	0.21	+0.2
2,138,188	-	MPMX19_02045	0.21	+0.4
2,138,188	-	MPMX19_02045	0.21	+0.2

Or see this region's nucleotide sequence