Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01583

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01581 and MPMX19_01582 are separated by 23 nucleotidesMPMX19_01582 and MPMX19_01583 are separated by 106 nucleotidesMPMX19_01583 and MPMX19_01584 are separated by 77 nucleotides MPMX19_01581: MPMX19_01581 - ATP-dependent RNA helicase DbpA, at 1,653,197 to 1,655,623 _01581 MPMX19_01582: MPMX19_01582 - Protein FeSII, at 1,655,647 to 1,656,030 _01582 MPMX19_01583: MPMX19_01583 - hypothetical protein, at 1,656,137 to 1,656,892 _01583 MPMX19_01584: MPMX19_01584 - Deoxyribodipyrimidine photo-lyase, at 1,656,970 to 1,658,442 _01584 Position (kb) 1656 1657Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.276 kb on + strand, within MPMX19_01581at 1655.277 kb on - strand, within MPMX19_01581at 1655.277 kb on - strand, within MPMX19_01581at 1655.277 kb on - strand, within MPMX19_01581at 1655.277 kb on - strand, within MPMX19_01581at 1655.277 kb on - strand, within MPMX19_01581at 1655.277 kb on - strand, within MPMX19_01581at 1655.277 kb on - strand, within MPMX19_01581at 1655.277 kb on - strand, within MPMX19_01581at 1655.277 kb on - strand, within MPMX19_01581at 1655.277 kb on - strand, within MPMX19_01581at 1655.277 kb on - strand, within MPMX19_01581at 1655.277 kb on - strand, within MPMX19_01581at 1655.277 kb on - strand, within MPMX19_01581at 1655.277 kb on - strand, within MPMX19_01581at 1655.648 kb on + strandat 1655.648 kb on + strandat 1655.648 kb on + strandat 1655.649 kb on - strandat 1655.649 kb on - strandat 1655.649 kb on - strandat 1655.649 kb on - strandat 1655.649 kb on - strandat 1655.739 kb on - strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.864 kb on + strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.865 kb on - strand, within MPMX19_01582at 1655.978 kb on + strand, within MPMX19_01582at 1655.978 kb on + strand, within MPMX19_01582at 1655.978 kb on + strand, within MPMX19_01582at 1655.978 kb on + strand, within MPMX19_01582at 1655.979 kb on - strand, within MPMX19_01582at 1656.034 kb on + strandat 1656.034 kb on + strandat 1656.045 kb on + strandat 1656.045 kb on + strandat 1656.046 kb on - strandat 1656.046 kb on - strandat 1656.148 kb on + strandat 1656.148 kb on + strandat 1656.148 kb on + strandat 1656.149 kb on - strandat 1656.356 kb on + strand, within MPMX19_01583at 1656.848 kb on + strandat 1656.849 kb on - strandat 1656.849 kb on - strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.930 kb on + strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.931 kb on - strandat 1656.932 kb on + strandat 1656.932 kb on + strandat 1656.933 kb on - strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on + strandat 1657.087 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.088 kb on - strandat 1657.089 kb on + strandat 1657.089 kb on + strandat 1657.089 kb on + strandat 1657.089 kb on + strandat 1657.089 kb on + strandat 1657.090 kb on - strandat 1657.090 kb on - strandat 1657.660 kb on + strand, within MPMX19_01584at 1657.660 kb on + strand, within MPMX19_01584at 1657.660 kb on + strand, within MPMX19_01584at 1657.660 kb on + strand, within MPMX19_01584at 1657.661 kb on - strand, within MPMX19_01584at 1657.661 kb on - strand, within MPMX19_01584at 1657.661 kb on - strand, within MPMX19_01584at 1657.661 kb on - strand, within MPMX19_01584at 1657.661 kb on - strand, within MPMX19_01584at 1657.661 kb on - strand, within MPMX19_01584at 1657.661 kb on - strand, within MPMX19_01584at 1657.661 kb on - strand, within MPMX19_01584at 1657.714 kb on + strand, within MPMX19_01584at 1657.714 kb on + strand, within MPMX19_01584at 1657.714 kb on + strand, within MPMX19_01584at 1657.714 kb on + strand, within MPMX19_01584at 1657.714 kb on + strand, within MPMX19_01584at 1657.715 kb on - strand, within MPMX19_01584at 1657.715 kb on - strand, within MPMX19_01584at 1657.715 kb on - strand, within MPMX19_01584at 1657.715 kb on - strand, within MPMX19_01584

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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1,655,276 + MPMX19_01581 0.86 -0.4
1,655,276 + MPMX19_01581 0.86 -0.5
1,655,276 + MPMX19_01581 0.86 -0.0
1,655,276 + MPMX19_01581 0.86 -1.0
1,655,276 + MPMX19_01581 0.86 -0.9
1,655,276 + MPMX19_01581 0.86 -2.8
1,655,276 + MPMX19_01581 0.86 +0.5
1,655,276 + MPMX19_01581 0.86 -1.4
1,655,276 + MPMX19_01581 0.86 +1.1
1,655,276 + MPMX19_01581 0.86 -0.5
1,655,276 + MPMX19_01581 0.86 -0.1
1,655,276 + MPMX19_01581 0.86 +0.7
1,655,276 + MPMX19_01581 0.86 -0.1
1,655,276 + MPMX19_01581 0.86 -1.7
1,655,276 + MPMX19_01581 0.86 +0.5
1,655,276 + MPMX19_01581 0.86 -1.4
1,655,276 + MPMX19_01581 0.86 +0.3
1,655,276 + MPMX19_01581 0.86 +0.9
1,655,276 + MPMX19_01581 0.86 -0.7
1,655,276 + MPMX19_01581 0.86 -0.4
1,655,276 + MPMX19_01581 0.86 -1.2
1,655,276 + MPMX19_01581 0.86 -2.6
1,655,276 + MPMX19_01581 0.86 -0.5
1,655,276 + MPMX19_01581 0.86 -0.5
1,655,277 - MPMX19_01581 0.86 +0.2
1,655,277 - MPMX19_01581 0.86 -1.3
1,655,277 - MPMX19_01581 0.86 -0.1
1,655,277 - MPMX19_01581 0.86 -1.0
1,655,277 - MPMX19_01581 0.86 +0.6
1,655,277 - MPMX19_01581 0.86 +0.0
1,655,277 - MPMX19_01581 0.86 +0.2
1,655,277 - MPMX19_01581 0.86 +0.5
1,655,277 - MPMX19_01581 0.86 -0.0
1,655,277 - MPMX19_01581 0.86 -0.1
1,655,277 - MPMX19_01581 0.86 -0.9
1,655,277 - MPMX19_01581 0.86 +0.5
1,655,277 - MPMX19_01581 0.86 +0.2
1,655,277 - MPMX19_01581 0.86 -0.3
1,655,648 + +0.5
1,655,648 + +0.8
1,655,648 + -1.2
1,655,649 - +0.5
1,655,649 - -2.5
1,655,649 - -0.3
1,655,649 - +0.6
1,655,649 - -0.7
1,655,739 - MPMX19_01582 0.24 -1.5
1,655,864 + MPMX19_01582 0.57 +0.7
1,655,864 + MPMX19_01582 0.57 -0.4
1,655,864 + MPMX19_01582 0.57 +0.2
1,655,864 + MPMX19_01582 0.57 +0.8
1,655,864 + MPMX19_01582 0.57 -0.6
1,655,864 + MPMX19_01582 0.57 -0.5
1,655,864 + MPMX19_01582 0.57 -1.2
1,655,864 + MPMX19_01582 0.57 +0.8
1,655,864 + MPMX19_01582 0.57 +0.9
1,655,864 + MPMX19_01582 0.57 +0.3
1,655,864 + MPMX19_01582 0.57 +0.5
1,655,864 + MPMX19_01582 0.57 -1.0
1,655,864 + MPMX19_01582 0.57 +2.0
1,655,864 + MPMX19_01582 0.57 +0.4
1,655,864 + MPMX19_01582 0.57 +0.8
1,655,864 + MPMX19_01582 0.57 +0.0
1,655,864 + MPMX19_01582 0.57 +0.5
1,655,864 + MPMX19_01582 0.57 -1.3
1,655,864 + MPMX19_01582 0.57 +1.5
1,655,864 + MPMX19_01582 0.57 +1.0
1,655,865 - MPMX19_01582 0.57 -0.1
1,655,865 - MPMX19_01582 0.57 -0.6
1,655,865 - MPMX19_01582 0.57 +0.6
1,655,865 - MPMX19_01582 0.57 -0.1
1,655,865 - MPMX19_01582 0.57 +0.1
1,655,865 - MPMX19_01582 0.57 -0.3
1,655,865 - MPMX19_01582 0.57 +1.0
1,655,865 - MPMX19_01582 0.57 +0.5
1,655,865 - MPMX19_01582 0.57 -1.3
1,655,865 - MPMX19_01582 0.57 -2.6
1,655,865 - MPMX19_01582 0.57 -0.3
1,655,865 - MPMX19_01582 0.57 -0.9
1,655,865 - MPMX19_01582 0.57 +1.7
1,655,865 - MPMX19_01582 0.57 +0.3
1,655,865 - MPMX19_01582 0.57 +0.6
1,655,865 - MPMX19_01582 0.57 +0.9
1,655,978 + MPMX19_01582 0.86 +0.2
1,655,978 + MPMX19_01582 0.86 -1.2
1,655,978 + MPMX19_01582 0.86 -0.9
1,655,978 + MPMX19_01582 0.86 -0.9
1,655,979 - MPMX19_01582 0.86 -0.7
1,656,034 + +1.2
1,656,034 + +0.8
1,656,045 + -0.1
1,656,045 + -0.1
1,656,046 - -1.0
1,656,046 - -1.1
1,656,148 + +0.8
1,656,148 + +0.3
1,656,148 + -1.5
1,656,149 - -1.1
1,656,356 + MPMX19_01583 0.29 +1.0
1,656,848 + -0.8
1,656,849 - +0.6
1,656,849 - +0.1
1,656,930 + +1.2
1,656,930 + -0.2
1,656,930 + +0.3
1,656,930 + -0.5
1,656,930 + +0.3
1,656,930 + +0.3
1,656,930 + -1.1
1,656,930 + +0.2
1,656,930 + -0.4
1,656,930 + +0.8
1,656,930 + +0.3
1,656,930 + -0.0
1,656,930 + -1.2
1,656,930 + -0.1
1,656,930 + -1.0
1,656,930 + +0.5
1,656,931 - +1.1
1,656,931 - -2.1
1,656,931 - -0.6
1,656,931 - -0.7
1,656,931 - +0.8
1,656,931 - -0.5
1,656,931 - +0.0
1,656,931 - -0.7
1,656,931 - +0.5
1,656,931 - +1.0
1,656,931 - -0.4
1,656,931 - -1.2
1,656,931 - +0.5
1,656,931 - +0.2
1,656,931 - -0.3
1,656,931 - -0.5
1,656,931 - -0.9
1,656,931 - +0.2
1,656,931 - -1.2
1,656,931 - +1.2
1,656,931 - -0.8
1,656,931 - -0.8
1,656,931 - +0.8
1,656,931 - -0.3
1,656,931 - -0.4
1,656,932 + -0.1
1,656,932 + -1.2
1,656,933 - +0.0
1,657,087 + -0.6
1,657,087 + -0.1
1,657,087 + -0.5
1,657,087 + -0.5
1,657,087 + -1.2
1,657,087 + -0.9
1,657,087 + -2.5
1,657,087 + -0.6
1,657,087 + -0.3
1,657,087 + +1.5
1,657,087 + -2.2
1,657,087 + -1.5
1,657,087 + +0.2
1,657,087 + +0.3
1,657,087 + +0.7
1,657,087 + -1.9
1,657,087 + +1.5
1,657,087 + -1.4
1,657,087 + -1.9
1,657,087 + -1.6
1,657,087 + -1.3
1,657,087 + +0.6
1,657,087 + +0.5
1,657,087 + -1.1
1,657,087 + +0.6
1,657,087 + +0.7
1,657,087 + -1.8
1,657,087 - -0.5
1,657,088 - -1.1
1,657,088 - -0.9
1,657,088 - -0.0
1,657,088 - -0.5
1,657,088 - -0.4
1,657,088 - +0.3
1,657,088 - -0.5
1,657,088 - +0.8
1,657,088 - -0.6
1,657,088 - -1.0
1,657,088 - +0.1
1,657,088 - -0.4
1,657,088 - -0.2
1,657,088 - +1.2
1,657,088 - -0.5
1,657,088 - -0.1
1,657,088 - -0.7
1,657,088 - -0.7
1,657,088 - -0.1
1,657,088 - +0.4
1,657,089 + -1.5
1,657,089 + -0.2
1,657,089 + +2.1
1,657,089 + -0.3
1,657,089 + -1.0
1,657,090 - -0.1
1,657,090 - -0.5
1,657,660 + MPMX19_01584 0.47 -1.4
1,657,660 + MPMX19_01584 0.47 -1.9
1,657,660 + MPMX19_01584 0.47 +0.5
1,657,660 + MPMX19_01584 0.47 +0.1
1,657,661 - MPMX19_01584 0.47 -0.8
1,657,661 - MPMX19_01584 0.47 -0.6
1,657,661 - MPMX19_01584 0.47 -1.2
1,657,661 - MPMX19_01584 0.47 +0.9
1,657,661 - MPMX19_01584 0.47 -0.4
1,657,661 - MPMX19_01584 0.47 -0.1
1,657,661 - MPMX19_01584 0.47 +0.3
1,657,661 - MPMX19_01584 0.47 -0.7
1,657,714 + MPMX19_01584 0.51 +0.1
1,657,714 + MPMX19_01584 0.51 -0.3
1,657,714 + MPMX19_01584 0.51 -1.7
1,657,714 + MPMX19_01584 0.51 -0.0
1,657,714 + MPMX19_01584 0.51 -1.5
1,657,715 - MPMX19_01584 0.51 +0.9
1,657,715 - MPMX19_01584 0.51 -0.1
1,657,715 - MPMX19_01584 0.51 -0.8
1,657,715 - MPMX19_01584 0.51 -0.1

Or see this region's nucleotide sequence