Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01544

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01542 and MPMX19_01543 are separated by 155 nucleotidesMPMX19_01543 and MPMX19_01544 are separated by 104 nucleotidesMPMX19_01544 and MPMX19_01545 are separated by 198 nucleotides MPMX19_01542: MPMX19_01542 - Pseudopaline exporter CntI, at 1,615,035 to 1,615,937 _01542 MPMX19_01543: MPMX19_01543 - tRNA-Val, at 1,616,093 to 1,616,167 _01543 MPMX19_01544: MPMX19_01544 - DNA-binding protein HU, at 1,616,272 to 1,616,544 _01544 MPMX19_01545: MPMX19_01545 - Lon protease, at 1,616,743 to 1,619,157 _01545 Position (kb) 1616 1617Strain fitness (log2 ratio) -2 -1 0 1 2at 1615.276 kb on + strand, within MPMX19_01542at 1615.276 kb on + strand, within MPMX19_01542at 1615.296 kb on + strand, within MPMX19_01542at 1615.296 kb on + strand, within MPMX19_01542at 1615.296 kb on + strand, within MPMX19_01542at 1615.296 kb on + strand, within MPMX19_01542at 1615.296 kb on + strand, within MPMX19_01542at 1615.296 kb on + strand, within MPMX19_01542at 1615.296 kb on + strand, within MPMX19_01542at 1615.297 kb on - strand, within MPMX19_01542at 1615.297 kb on - strand, within MPMX19_01542at 1615.297 kb on - strand, within MPMX19_01542at 1615.297 kb on - strand, within MPMX19_01542at 1615.297 kb on - strand, within MPMX19_01542at 1615.338 kb on + strand, within MPMX19_01542at 1615.338 kb on + strand, within MPMX19_01542at 1615.338 kb on + strand, within MPMX19_01542at 1615.338 kb on + strand, within MPMX19_01542at 1615.338 kb on + strand, within MPMX19_01542at 1615.338 kb on + strand, within MPMX19_01542at 1615.338 kb on + strand, within MPMX19_01542at 1615.338 kb on + strand, within MPMX19_01542at 1615.338 kb on + strand, within MPMX19_01542at 1615.338 kb on + strand, within MPMX19_01542at 1615.338 kb on + strand, within MPMX19_01542at 1615.338 kb on + strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.339 kb on - strand, within MPMX19_01542at 1615.447 kb on + strand, within MPMX19_01542at 1615.447 kb on + strand, within MPMX19_01542at 1615.448 kb on - strand, within MPMX19_01542at 1615.448 kb on - strand, within MPMX19_01542at 1615.590 kb on + strand, within MPMX19_01542at 1615.590 kb on + strand, within MPMX19_01542at 1615.590 kb on + strand, within MPMX19_01542at 1615.590 kb on + strand, within MPMX19_01542at 1615.590 kb on + strand, within MPMX19_01542at 1615.590 kb on + strand, within MPMX19_01542at 1615.789 kb on + strand, within MPMX19_01542at 1615.789 kb on + strand, within MPMX19_01542at 1615.789 kb on + strand, within MPMX19_01542at 1615.790 kb on - strand, within MPMX19_01542at 1615.790 kb on - strand, within MPMX19_01542at 1615.790 kb on - strand, within MPMX19_01542at 1615.790 kb on - strand, within MPMX19_01542at 1615.804 kb on + strand, within MPMX19_01542at 1615.804 kb on + strand, within MPMX19_01542at 1615.804 kb on + strand, within MPMX19_01542at 1615.804 kb on + strand, within MPMX19_01542at 1615.804 kb on + strand, within MPMX19_01542at 1615.804 kb on + strand, within MPMX19_01542at 1615.804 kb on + strand, within MPMX19_01542at 1615.805 kb on - strand, within MPMX19_01542at 1615.805 kb on - strand, within MPMX19_01542at 1615.805 kb on - strand, within MPMX19_01542at 1615.805 kb on - strand, within MPMX19_01542at 1615.805 kb on - strand, within MPMX19_01542at 1615.880 kb on + strandat 1615.881 kb on - strandat 1615.881 kb on - strandat 1615.881 kb on - strandat 1615.963 kb on - strandat 1615.963 kb on - strandat 1615.963 kb on - strandat 1615.963 kb on - strandat 1615.963 kb on - strandat 1615.996 kb on + strandat 1615.996 kb on + strandat 1615.996 kb on + strandat 1615.996 kb on + strandat 1615.996 kb on + strandat 1615.996 kb on + strandat 1615.996 kb on + strandat 1615.996 kb on + strandat 1615.996 kb on + strandat 1615.996 kb on + strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1615.997 kb on - strandat 1616.011 kb on + strandat 1616.076 kb on + strandat 1616.076 kb on + strandat 1616.076 kb on + strandat 1616.077 kb on - strandat 1616.077 kb on - strandat 1616.077 kb on - strandat 1616.231 kb on - strandat 1616.274 kb on - strandat 1617.228 kb on - strand, within MPMX19_01545at 1617.426 kb on - strand, within MPMX19_01545at 1617.426 kb on - strand, within MPMX19_01545at 1617.426 kb on - strand, within MPMX19_01545

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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1,615,276 + MPMX19_01542 0.27 +1.0
1,615,276 + MPMX19_01542 0.27 +1.1
1,615,296 + MPMX19_01542 0.29 -0.2
1,615,296 + MPMX19_01542 0.29 +0.2
1,615,296 + MPMX19_01542 0.29 +0.9
1,615,296 + MPMX19_01542 0.29 +0.2
1,615,296 + MPMX19_01542 0.29 +0.6
1,615,296 + MPMX19_01542 0.29 -0.4
1,615,296 + MPMX19_01542 0.29 +0.2
1,615,297 - MPMX19_01542 0.29 -0.8
1,615,297 - MPMX19_01542 0.29 -0.1
1,615,297 - MPMX19_01542 0.29 +0.4
1,615,297 - MPMX19_01542 0.29 -0.9
1,615,297 - MPMX19_01542 0.29 +0.4
1,615,338 + MPMX19_01542 0.34 +0.5
1,615,338 + MPMX19_01542 0.34 +0.2
1,615,338 + MPMX19_01542 0.34 -1.1
1,615,338 + MPMX19_01542 0.34 -0.1
1,615,338 + MPMX19_01542 0.34 -0.6
1,615,338 + MPMX19_01542 0.34 -0.8
1,615,338 + MPMX19_01542 0.34 -1.0
1,615,338 + MPMX19_01542 0.34 -0.4
1,615,338 + MPMX19_01542 0.34 +1.0
1,615,338 + MPMX19_01542 0.34 -0.3
1,615,338 + MPMX19_01542 0.34 -0.3
1,615,338 + MPMX19_01542 0.34 -1.2
1,615,339 - MPMX19_01542 0.34 -1.3
1,615,339 - MPMX19_01542 0.34 -1.9
1,615,339 - MPMX19_01542 0.34 +0.5
1,615,339 - MPMX19_01542 0.34 -1.4
1,615,339 - MPMX19_01542 0.34 -0.6
1,615,339 - MPMX19_01542 0.34 +1.3
1,615,339 - MPMX19_01542 0.34 -0.1
1,615,339 - MPMX19_01542 0.34 -0.5
1,615,339 - MPMX19_01542 0.34 -0.1
1,615,339 - MPMX19_01542 0.34 +1.1
1,615,339 - MPMX19_01542 0.34 -0.4
1,615,339 - MPMX19_01542 0.34 +0.3
1,615,339 - MPMX19_01542 0.34 +0.6
1,615,339 - MPMX19_01542 0.34 -1.1
1,615,339 - MPMX19_01542 0.34 -1.2
1,615,339 - MPMX19_01542 0.34 +0.3
1,615,339 - MPMX19_01542 0.34 +1.1
1,615,339 - MPMX19_01542 0.34 +0.4
1,615,447 + MPMX19_01542 0.46 -0.0
1,615,447 + MPMX19_01542 0.46 +1.5
1,615,448 - MPMX19_01542 0.46 -0.7
1,615,448 - MPMX19_01542 0.46 +1.0
1,615,590 + MPMX19_01542 0.61 -0.5
1,615,590 + MPMX19_01542 0.61 -0.7
1,615,590 + MPMX19_01542 0.61 +0.5
1,615,590 + MPMX19_01542 0.61 +0.5
1,615,590 + MPMX19_01542 0.61 -0.7
1,615,590 + MPMX19_01542 0.61 +0.5
1,615,789 + MPMX19_01542 0.83 +0.6
1,615,789 + MPMX19_01542 0.83 -0.5
1,615,789 + MPMX19_01542 0.83 +0.5
1,615,790 - MPMX19_01542 0.84 -0.5
1,615,790 - MPMX19_01542 0.84 +0.9
1,615,790 - MPMX19_01542 0.84 +0.1
1,615,790 - MPMX19_01542 0.84 -0.6
1,615,804 + MPMX19_01542 0.85 -0.4
1,615,804 + MPMX19_01542 0.85 +0.1
1,615,804 + MPMX19_01542 0.85 -0.4
1,615,804 + MPMX19_01542 0.85 +0.0
1,615,804 + MPMX19_01542 0.85 -0.7
1,615,804 + MPMX19_01542 0.85 -2.4
1,615,804 + MPMX19_01542 0.85 -1.6
1,615,805 - MPMX19_01542 0.85 +0.6
1,615,805 - MPMX19_01542 0.85 -0.7
1,615,805 - MPMX19_01542 0.85 +0.6
1,615,805 - MPMX19_01542 0.85 +0.1
1,615,805 - MPMX19_01542 0.85 -0.4
1,615,880 + -0.2
1,615,881 - +0.4
1,615,881 - +0.0
1,615,881 - -1.4
1,615,963 - -0.2
1,615,963 - +0.7
1,615,963 - -1.5
1,615,963 - +0.6
1,615,963 - -0.4
1,615,996 + +0.5
1,615,996 + -0.4
1,615,996 + -1.4
1,615,996 + -0.6
1,615,996 + -1.0
1,615,996 + -0.5
1,615,996 + +0.1
1,615,996 + -0.5
1,615,996 + -0.8
1,615,996 + -1.3
1,615,997 - +0.0
1,615,997 - -0.1
1,615,997 - -2.6
1,615,997 - -0.0
1,615,997 - +0.1
1,615,997 - +0.1
1,615,997 - +0.7
1,615,997 - +2.2
1,615,997 - -1.5
1,615,997 - +1.1
1,615,997 - -0.6
1,615,997 - +0.3
1,615,997 - -1.4
1,615,997 - -0.7
1,615,997 - +0.1
1,615,997 - -1.3
1,615,997 - -0.6
1,615,997 - +0.6
1,615,997 - -0.4
1,615,997 - -1.1
1,615,997 - -0.8
1,615,997 - -1.1
1,616,011 + +1.8
1,616,076 + -0.5
1,616,076 + -0.4
1,616,076 + +0.5
1,616,077 - +0.1
1,616,077 - +0.6
1,616,077 - -0.3
1,616,231 - -0.4
1,616,274 - -0.4
1,617,228 - MPMX19_01545 0.20 -0.9
1,617,426 - MPMX19_01545 0.28 -0.9
1,617,426 - MPMX19_01545 0.28 -0.1
1,617,426 - MPMX19_01545 0.28 +1.5

Or see this region's nucleotide sequence