Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01101

Experiment: NL-CCM_agar

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_01100 and MPMX19_01101 are separated by 20 nucleotidesMPMX19_01101 and MPMX19_01102 are separated by 15 nucleotides MPMX19_01100: MPMX19_01100 - Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, at 1,135,488 to 1,136,810 _01100 MPMX19_01101: MPMX19_01101 - hypothetical protein, at 1,136,831 to 1,137,133 _01101 MPMX19_01102: MPMX19_01102 - Dihydrolipoyl dehydrogenase, at 1,137,149 to 1,138,546 _01102 Position (kb) 1136 1137 1138Strain fitness (log2 ratio) -1 0 1at 1137.020 kb on + strand, within MPMX19_01101at 1137.053 kb on + strand, within MPMX19_01101at 1137.053 kb on + strand, within MPMX19_01101at 1137.053 kb on + strand, within MPMX19_01101at 1137.164 kb on + strandat 1137.165 kb on - strandat 1137.725 kb on + strand, within MPMX19_01102

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
remove
1,137,020 + MPMX19_01101 0.62 -1.0
1,137,053 + MPMX19_01101 0.73 -0.4
1,137,053 + MPMX19_01101 0.73 -0.2
1,137,053 + MPMX19_01101 0.73 -1.3
1,137,164 + -1.3
1,137,165 - -0.6
1,137,725 + MPMX19_01102 0.41 -1.4

Or see this region's nucleotide sequence