Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01042

Experiment: NL-CCM_agar

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_01041 and MPMX19_01042 are separated by 189 nucleotidesMPMX19_01042 and MPMX19_01043 are separated by 33 nucleotides MPMX19_01041: MPMX19_01041 - hypothetical protein, at 1,081,783 to 1,082,952 _01041 MPMX19_01042: MPMX19_01042 - hypothetical protein, at 1,083,142 to 1,083,645 _01042 MPMX19_01043: MPMX19_01043 - Acetyltransferase YpeA, at 1,083,679 to 1,084,335 _01043 Position (kb) 1083 1084Strain fitness (log2 ratio) -2 -1 0 1 2at 1082.465 kb on + strand, within MPMX19_01041at 1082.465 kb on + strand, within MPMX19_01041at 1082.465 kb on + strand, within MPMX19_01041at 1082.466 kb on - strand, within MPMX19_01041at 1082.466 kb on - strand, within MPMX19_01041at 1082.604 kb on - strand, within MPMX19_01041at 1082.693 kb on + strand, within MPMX19_01041at 1082.693 kb on + strand, within MPMX19_01041at 1082.693 kb on + strand, within MPMX19_01041at 1082.694 kb on - strand, within MPMX19_01041at 1082.694 kb on - strand, within MPMX19_01041at 1082.694 kb on - strand, within MPMX19_01041at 1082.729 kb on + strand, within MPMX19_01041at 1082.729 kb on + strand, within MPMX19_01041at 1082.729 kb on + strand, within MPMX19_01041at 1082.729 kb on + strand, within MPMX19_01041at 1082.729 kb on + strand, within MPMX19_01041at 1082.729 kb on + strand, within MPMX19_01041at 1082.729 kb on + strand, within MPMX19_01041at 1082.729 kb on + strand, within MPMX19_01041at 1082.729 kb on + strand, within MPMX19_01041at 1082.729 kb on + strand, within MPMX19_01041at 1082.729 kb on + strand, within MPMX19_01041at 1082.729 kb on + strand, within MPMX19_01041at 1082.729 kb on + strand, within MPMX19_01041at 1082.729 kb on + strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.730 kb on - strand, within MPMX19_01041at 1082.834 kb on + strand, within MPMX19_01041at 1082.835 kb on - strand, within MPMX19_01041at 1082.977 kb on + strandat 1082.977 kb on + strandat 1082.977 kb on + strandat 1082.978 kb on - strandat 1082.978 kb on - strandat 1083.106 kb on + strandat 1083.106 kb on + strandat 1083.107 kb on - strandat 1083.107 kb on - strandat 1083.107 kb on - strandat 1083.107 kb on - strandat 1083.169 kb on + strandat 1083.276 kb on + strand, within MPMX19_01042at 1083.440 kb on + strand, within MPMX19_01042at 1083.440 kb on + strand, within MPMX19_01042at 1083.558 kb on + strand, within MPMX19_01042at 1083.558 kb on + strand, within MPMX19_01042at 1083.558 kb on + strand, within MPMX19_01042at 1083.558 kb on + strand, within MPMX19_01042at 1083.558 kb on + strand, within MPMX19_01042at 1083.558 kb on + strand, within MPMX19_01042at 1083.558 kb on + strand, within MPMX19_01042at 1083.559 kb on - strand, within MPMX19_01042at 1083.559 kb on - strand, within MPMX19_01042at 1083.559 kb on - strand, within MPMX19_01042at 1083.559 kb on - strand, within MPMX19_01042at 1083.559 kb on - strand, within MPMX19_01042at 1083.559 kb on - strand, within MPMX19_01042at 1083.559 kb on - strand, within MPMX19_01042at 1083.643 kb on + strandat 1083.643 kb on + strandat 1083.643 kb on + strandat 1083.643 kb on + strandat 1083.644 kb on - strandat 1083.644 kb on - strandat 1083.658 kb on + strandat 1083.658 kb on + strandat 1083.658 kb on + strandat 1083.658 kb on + strandat 1083.658 kb on + strandat 1083.658 kb on + strandat 1083.658 kb on + strandat 1083.658 kb on + strandat 1083.659 kb on + strandat 1083.659 kb on - strandat 1083.659 kb on - strandat 1083.659 kb on - strandat 1083.659 kb on - strandat 1083.659 kb on - strandat 1083.659 kb on - strandat 1083.659 kb on - strandat 1083.659 kb on - strandat 1083.659 kb on - strandat 1083.659 kb on - strandat 1083.662 kb on + strandat 1083.662 kb on + strandat 1083.662 kb on + strandat 1083.662 kb on + strandat 1083.662 kb on + strandat 1083.663 kb on - strandat 1083.663 kb on - strandat 1083.663 kb on - strandat 1083.663 kb on - strandat 1083.663 kb on - strandat 1083.663 kb on - strandat 1083.807 kb on + strand, within MPMX19_01043at 1083.807 kb on + strand, within MPMX19_01043at 1083.807 kb on + strand, within MPMX19_01043at 1083.807 kb on + strand, within MPMX19_01043at 1083.807 kb on + strand, within MPMX19_01043at 1083.807 kb on + strand, within MPMX19_01043at 1083.807 kb on + strand, within MPMX19_01043at 1083.807 kb on + strand, within MPMX19_01043at 1083.807 kb on + strand, within MPMX19_01043at 1083.808 kb on - strand, within MPMX19_01043at 1083.808 kb on - strand, within MPMX19_01043at 1083.808 kb on - strand, within MPMX19_01043at 1083.808 kb on - strand, within MPMX19_01043at 1083.808 kb on - strand, within MPMX19_01043at 1083.808 kb on - strand, within MPMX19_01043at 1083.808 kb on - strand, within MPMX19_01043at 1083.808 kb on - strand, within MPMX19_01043at 1083.808 kb on - strand, within MPMX19_01043at 1083.808 kb on - strand, within MPMX19_01043at 1083.812 kb on + strand, within MPMX19_01043at 1083.813 kb on - strand, within MPMX19_01043at 1083.848 kb on + strand, within MPMX19_01043at 1083.848 kb on + strand, within MPMX19_01043at 1083.848 kb on + strand, within MPMX19_01043at 1083.848 kb on + strand, within MPMX19_01043at 1083.848 kb on + strand, within MPMX19_01043at 1083.848 kb on + strand, within MPMX19_01043at 1083.848 kb on + strand, within MPMX19_01043at 1083.849 kb on - strand, within MPMX19_01043at 1083.849 kb on - strand, within MPMX19_01043at 1083.849 kb on - strand, within MPMX19_01043at 1083.849 kb on - strand, within MPMX19_01043at 1083.863 kb on + strand, within MPMX19_01043at 1083.863 kb on + strand, within MPMX19_01043at 1083.863 kb on + strand, within MPMX19_01043at 1083.863 kb on + strand, within MPMX19_01043at 1083.863 kb on + strand, within MPMX19_01043at 1083.863 kb on + strand, within MPMX19_01043at 1083.863 kb on + strand, within MPMX19_01043at 1083.863 kb on + strand, within MPMX19_01043at 1083.863 kb on + strand, within MPMX19_01043at 1083.863 kb on + strand, within MPMX19_01043at 1083.863 kb on + strand, within MPMX19_01043at 1083.863 kb on + strand, within MPMX19_01043at 1083.863 kb on + strand, within MPMX19_01043at 1083.863 kb on + strand, within MPMX19_01043at 1083.863 kb on + strand, within MPMX19_01043at 1083.864 kb on - strand, within MPMX19_01043at 1083.864 kb on - strand, within MPMX19_01043at 1083.864 kb on - strand, within MPMX19_01043at 1083.864 kb on - strand, within MPMX19_01043at 1083.864 kb on - strand, within MPMX19_01043at 1083.864 kb on - strand, within MPMX19_01043at 1083.864 kb on - strand, within MPMX19_01043at 1083.864 kb on - strand, within MPMX19_01043at 1083.864 kb on - strand, within MPMX19_01043at 1083.864 kb on - strand, within MPMX19_01043at 1084.009 kb on + strand, within MPMX19_01043at 1084.009 kb on + strand, within MPMX19_01043at 1084.166 kb on + strand, within MPMX19_01043at 1084.166 kb on + strand, within MPMX19_01043at 1084.166 kb on + strand, within MPMX19_01043at 1084.166 kb on + strand, within MPMX19_01043at 1084.166 kb on + strand, within MPMX19_01043at 1084.166 kb on + strand, within MPMX19_01043at 1084.167 kb on - strand, within MPMX19_01043at 1084.167 kb on - strand, within MPMX19_01043at 1084.167 kb on - strand, within MPMX19_01043at 1084.167 kb on - strand, within MPMX19_01043at 1084.167 kb on - strand, within MPMX19_01043at 1084.269 kb on + strand, within MPMX19_01043at 1084.269 kb on + strand, within MPMX19_01043at 1084.269 kb on + strand, within MPMX19_01043at 1084.270 kb on - strandat 1084.409 kb on + strandat 1084.409 kb on + strandat 1084.409 kb on + strandat 1084.409 kb on + strandat 1084.410 kb on - strandat 1084.410 kb on - strandat 1084.410 kb on - strandat 1084.410 kb on - strandat 1084.410 kb on - strandat 1084.514 kb on + strandat 1084.555 kb on + strandat 1084.556 kb on - strandat 1084.559 kb on + strandat 1084.559 kb on + strandat 1084.559 kb on + strandat 1084.560 kb on - strandat 1084.560 kb on - strandat 1084.577 kb on + strandat 1084.577 kb on + strandat 1084.577 kb on + strandat 1084.613 kb on - strandat 1084.639 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
remove
1,082,465 + MPMX19_01041 0.58 -0.7
1,082,465 + MPMX19_01041 0.58 -1.0
1,082,465 + MPMX19_01041 0.58 -1.8
1,082,466 - MPMX19_01041 0.58 +0.7
1,082,466 - MPMX19_01041 0.58 +0.2
1,082,604 - MPMX19_01041 0.70 +0.6
1,082,693 + MPMX19_01041 0.78 -1.4
1,082,693 + MPMX19_01041 0.78 +1.0
1,082,693 + MPMX19_01041 0.78 +0.3
1,082,694 - MPMX19_01041 0.78 +0.0
1,082,694 - MPMX19_01041 0.78 +0.4
1,082,694 - MPMX19_01041 0.78 +2.4
1,082,729 + MPMX19_01041 0.81 -0.2
1,082,729 + MPMX19_01041 0.81 +1.6
1,082,729 + MPMX19_01041 0.81 +0.9
1,082,729 + MPMX19_01041 0.81 +0.7
1,082,729 + MPMX19_01041 0.81 -0.2
1,082,729 + MPMX19_01041 0.81 -0.0
1,082,729 + MPMX19_01041 0.81 -0.2
1,082,729 + MPMX19_01041 0.81 -0.3
1,082,729 + MPMX19_01041 0.81 -0.6
1,082,729 + MPMX19_01041 0.81 -0.3
1,082,729 + MPMX19_01041 0.81 -0.6
1,082,729 + MPMX19_01041 0.81 +0.3
1,082,729 + MPMX19_01041 0.81 -0.5
1,082,729 + MPMX19_01041 0.81 +0.7
1,082,730 - MPMX19_01041 0.81 +0.6
1,082,730 - MPMX19_01041 0.81 -1.0
1,082,730 - MPMX19_01041 0.81 +0.7
1,082,730 - MPMX19_01041 0.81 -0.8
1,082,730 - MPMX19_01041 0.81 -0.3
1,082,730 - MPMX19_01041 0.81 +0.3
1,082,730 - MPMX19_01041 0.81 +1.7
1,082,730 - MPMX19_01041 0.81 -0.7
1,082,730 - MPMX19_01041 0.81 -1.3
1,082,730 - MPMX19_01041 0.81 +0.0
1,082,730 - MPMX19_01041 0.81 -2.0
1,082,730 - MPMX19_01041 0.81 -0.2
1,082,730 - MPMX19_01041 0.81 +0.2
1,082,730 - MPMX19_01041 0.81 -0.9
1,082,730 - MPMX19_01041 0.81 +0.1
1,082,730 - MPMX19_01041 0.81 -1.8
1,082,730 - MPMX19_01041 0.81 -0.5
1,082,730 - MPMX19_01041 0.81 +1.1
1,082,834 + MPMX19_01041 0.90 -0.9
1,082,835 - MPMX19_01041 0.90 -1.9
1,082,977 + -0.1
1,082,977 + -0.9
1,082,977 + +0.2
1,082,978 - -0.6
1,082,978 - -0.5
1,083,106 + +0.3
1,083,106 + +0.6
1,083,107 - +0.1
1,083,107 - -1.2
1,083,107 - -1.8
1,083,107 - -1.0
1,083,169 + -0.9
1,083,276 + MPMX19_01042 0.27 -2.2
1,083,440 + MPMX19_01042 0.59 -0.9
1,083,440 + MPMX19_01042 0.59 -1.0
1,083,558 + MPMX19_01042 0.83 -1.1
1,083,558 + MPMX19_01042 0.83 -0.3
1,083,558 + MPMX19_01042 0.83 -1.9
1,083,558 + MPMX19_01042 0.83 -0.7
1,083,558 + MPMX19_01042 0.83 +0.3
1,083,558 + MPMX19_01042 0.83 -1.9
1,083,558 + MPMX19_01042 0.83 -0.6
1,083,559 - MPMX19_01042 0.83 -0.4
1,083,559 - MPMX19_01042 0.83 +0.3
1,083,559 - MPMX19_01042 0.83 -0.7
1,083,559 - MPMX19_01042 0.83 -0.2
1,083,559 - MPMX19_01042 0.83 -2.3
1,083,559 - MPMX19_01042 0.83 -0.9
1,083,559 - MPMX19_01042 0.83 -0.8
1,083,643 + -0.9
1,083,643 + +0.2
1,083,643 + +0.1
1,083,643 + -1.0
1,083,644 - +0.3
1,083,644 - -1.2
1,083,658 + -1.4
1,083,658 + -0.9
1,083,658 + +0.2
1,083,658 + -0.0
1,083,658 + -0.5
1,083,658 + -0.4
1,083,658 + +1.5
1,083,658 + +1.1
1,083,659 + +0.4
1,083,659 - -0.1
1,083,659 - +0.4
1,083,659 - +1.0
1,083,659 - +0.7
1,083,659 - -0.2
1,083,659 - -1.1
1,083,659 - +1.0
1,083,659 - +0.1
1,083,659 - -0.1
1,083,659 - -0.4
1,083,662 + -2.3
1,083,662 + -1.3
1,083,662 + +0.6
1,083,662 + -0.5
1,083,662 + +0.4
1,083,663 - -0.5
1,083,663 - -1.6
1,083,663 - +0.3
1,083,663 - +1.2
1,083,663 - -1.2
1,083,663 - -0.9
1,083,807 + MPMX19_01043 0.19 -0.4
1,083,807 + MPMX19_01043 0.19 -0.9
1,083,807 + MPMX19_01043 0.19 -1.9
1,083,807 + MPMX19_01043 0.19 +0.2
1,083,807 + MPMX19_01043 0.19 +0.2
1,083,807 + MPMX19_01043 0.19 -0.5
1,083,807 + MPMX19_01043 0.19 -0.9
1,083,807 + MPMX19_01043 0.19 +0.0
1,083,807 + MPMX19_01043 0.19 -1.4
1,083,808 - MPMX19_01043 0.20 -0.4
1,083,808 - MPMX19_01043 0.20 -0.5
1,083,808 - MPMX19_01043 0.20 -0.2
1,083,808 - MPMX19_01043 0.20 -2.0
1,083,808 - MPMX19_01043 0.20 -0.3
1,083,808 - MPMX19_01043 0.20 -0.6
1,083,808 - MPMX19_01043 0.20 -0.6
1,083,808 - MPMX19_01043 0.20 -0.2
1,083,808 - MPMX19_01043 0.20 +0.4
1,083,808 - MPMX19_01043 0.20 -0.3
1,083,812 + MPMX19_01043 0.20 +0.4
1,083,813 - MPMX19_01043 0.20 -0.1
1,083,848 + MPMX19_01043 0.26 -0.9
1,083,848 + MPMX19_01043 0.26 +0.3
1,083,848 + MPMX19_01043 0.26 +1.1
1,083,848 + MPMX19_01043 0.26 +0.2
1,083,848 + MPMX19_01043 0.26 -0.2
1,083,848 + MPMX19_01043 0.26 -1.4
1,083,848 + MPMX19_01043 0.26 -0.3
1,083,849 - MPMX19_01043 0.26 +0.3
1,083,849 - MPMX19_01043 0.26 -1.6
1,083,849 - MPMX19_01043 0.26 -0.6
1,083,849 - MPMX19_01043 0.26 +1.4
1,083,863 + MPMX19_01043 0.28 +0.4
1,083,863 + MPMX19_01043 0.28 -1.6
1,083,863 + MPMX19_01043 0.28 -0.2
1,083,863 + MPMX19_01043 0.28 -0.5
1,083,863 + MPMX19_01043 0.28 -0.6
1,083,863 + MPMX19_01043 0.28 +1.1
1,083,863 + MPMX19_01043 0.28 -0.2
1,083,863 + MPMX19_01043 0.28 +0.5
1,083,863 + MPMX19_01043 0.28 -0.3
1,083,863 + MPMX19_01043 0.28 -0.2
1,083,863 + MPMX19_01043 0.28 -0.6
1,083,863 + MPMX19_01043 0.28 +0.6
1,083,863 + MPMX19_01043 0.28 -0.6
1,083,863 + MPMX19_01043 0.28 +1.0
1,083,863 + MPMX19_01043 0.28 -0.7
1,083,864 - MPMX19_01043 0.28 +0.0
1,083,864 - MPMX19_01043 0.28 -0.4
1,083,864 - MPMX19_01043 0.28 -0.2
1,083,864 - MPMX19_01043 0.28 -0.3
1,083,864 - MPMX19_01043 0.28 +0.3
1,083,864 - MPMX19_01043 0.28 +0.6
1,083,864 - MPMX19_01043 0.28 -0.2
1,083,864 - MPMX19_01043 0.28 -0.6
1,083,864 - MPMX19_01043 0.28 -0.3
1,083,864 - MPMX19_01043 0.28 +0.1
1,084,009 + MPMX19_01043 0.50 +0.3
1,084,009 + MPMX19_01043 0.50 -0.2
1,084,166 + MPMX19_01043 0.74 -1.0
1,084,166 + MPMX19_01043 0.74 -1.4
1,084,166 + MPMX19_01043 0.74 -0.0
1,084,166 + MPMX19_01043 0.74 -0.2
1,084,166 + MPMX19_01043 0.74 -0.4
1,084,166 + MPMX19_01043 0.74 -0.0
1,084,167 - MPMX19_01043 0.74 +0.6
1,084,167 - MPMX19_01043 0.74 -0.4
1,084,167 - MPMX19_01043 0.74 +0.4
1,084,167 - MPMX19_01043 0.74 -0.1
1,084,167 - MPMX19_01043 0.74 +0.5
1,084,269 + MPMX19_01043 0.90 -1.1
1,084,269 + MPMX19_01043 0.90 -0.5
1,084,269 + MPMX19_01043 0.90 +0.1
1,084,270 - +0.2
1,084,409 + -2.2
1,084,409 + -0.2
1,084,409 + -0.0
1,084,409 + +2.3
1,084,410 - +0.6
1,084,410 - +1.3
1,084,410 - +1.6
1,084,410 - +0.7
1,084,410 - +0.2
1,084,514 + -0.3
1,084,555 + -1.2
1,084,556 - +0.1
1,084,559 + +1.4
1,084,559 + -0.5
1,084,559 + -2.1
1,084,560 - -0.2
1,084,560 - -0.2
1,084,577 + +0.4
1,084,577 + -0.1
1,084,577 + -0.2
1,084,613 - -0.6
1,084,639 - -0.9

Or see this region's nucleotide sequence