Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00997

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00996 and MPMX19_00997 are separated by 27 nucleotidesMPMX19_00997 and MPMX19_00998 are separated by 1 nucleotidesMPMX19_00998 and MPMX19_00999 are separated by 229 nucleotides MPMX19_00996: MPMX19_00996 - Metalloprotease MmpA, at 1,036,591 to 1,037,724 _00996 MPMX19_00997: MPMX19_00997 - Outer membrane protein assembly factor BamA, at 1,037,752 to 1,040,091 _00997 MPMX19_00998: MPMX19_00998 - hypothetical protein, at 1,040,093 to 1,040,737 _00998 MPMX19_00999: MPMX19_00999 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ, at 1,040,967 to 1,041,449 _00999 Position (kb) 1037 1038 1039 1040 1041Strain fitness (log2 ratio) -2 -1 0 1at 1036.753 kb on - strand, within MPMX19_00996at 1036.753 kb on - strand, within MPMX19_00996at 1036.753 kb on - strand, within MPMX19_00996at 1036.782 kb on + strand, within MPMX19_00996at 1036.804 kb on + strand, within MPMX19_00996at 1036.804 kb on + strand, within MPMX19_00996at 1036.804 kb on + strand, within MPMX19_00996at 1036.804 kb on + strand, within MPMX19_00996at 1036.805 kb on - strand, within MPMX19_00996at 1037.555 kb on + strand, within MPMX19_00996at 1037.555 kb on + strand, within MPMX19_00996at 1037.556 kb on - strand, within MPMX19_00996at 1037.556 kb on - strand, within MPMX19_00996at 1037.614 kb on + strandat 1040.089 kb on + strandat 1040.089 kb on + strandat 1040.089 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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1,036,753 - MPMX19_00996 0.14 +1.6
1,036,753 - MPMX19_00996 0.14 +1.0
1,036,753 - MPMX19_00996 0.14 -0.9
1,036,782 + MPMX19_00996 0.17 -0.8
1,036,804 + MPMX19_00996 0.19 -1.9
1,036,804 + MPMX19_00996 0.19 -1.3
1,036,804 + MPMX19_00996 0.19 -1.5
1,036,804 + MPMX19_00996 0.19 -2.6
1,036,805 - MPMX19_00996 0.19 -2.4
1,037,555 + MPMX19_00996 0.85 -0.8
1,037,555 + MPMX19_00996 0.85 -0.8
1,037,556 - MPMX19_00996 0.85 -0.0
1,037,556 - MPMX19_00996 0.85 -0.2
1,037,614 + -0.5
1,040,089 + -1.4
1,040,089 + +0.8
1,040,089 + +0.1

Or see this region's nucleotide sequence