Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00123 and MPMX19_00124 are separated by 103 nucleotides MPMX19_00124 and MPMX19_00125 are separated by 136 nucleotides
MPMX19_00123: MPMX19_00123 - ATP-dependent DNA helicase RecQ, at 134,562 to 136,475
_00123
MPMX19_00124: MPMX19_00124 - tRNA-Thr, at 136,579 to 136,653
_00124
MPMX19_00125: MPMX19_00125 - hypothetical protein, at 136,790 to 137,851
_00125
Position (kb) 136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 135.606 kb on + strand, within MPMX19_00123 at 135.607 kb on - strand, within MPMX19_00123 at 135.607 kb on - strand, within MPMX19_00123 at 135.607 kb on - strand, within MPMX19_00123 at 135.753 kb on + strand, within MPMX19_00123 at 135.753 kb on + strand, within MPMX19_00123 at 135.753 kb on + strand, within MPMX19_00123 at 135.753 kb on + strand, within MPMX19_00123 at 135.753 kb on + strand, within MPMX19_00123 at 135.754 kb on - strand, within MPMX19_00123 at 135.754 kb on - strand, within MPMX19_00123 at 135.754 kb on - strand, within MPMX19_00123 at 135.754 kb on - strand, within MPMX19_00123 at 135.754 kb on - strand, within MPMX19_00123 at 135.754 kb on - strand, within MPMX19_00123 at 135.754 kb on - strand, within MPMX19_00123 at 135.861 kb on + strand, within MPMX19_00123 at 135.861 kb on + strand, within MPMX19_00123 at 135.862 kb on - strand, within MPMX19_00123 at 136.009 kb on - strand, within MPMX19_00123 at 136.056 kb on + strand, within MPMX19_00123 at 136.056 kb on + strand, within MPMX19_00123 at 136.056 kb on + strand, within MPMX19_00123 at 136.056 kb on + strand, within MPMX19_00123 at 136.056 kb on + strand, within MPMX19_00123 at 136.056 kb on + strand, within MPMX19_00123 at 136.057 kb on - strand, within MPMX19_00123 at 136.057 kb on - strand, within MPMX19_00123 at 136.057 kb on - strand, within MPMX19_00123 at 136.057 kb on - strand, within MPMX19_00123 at 136.057 kb on - strand, within MPMX19_00123 at 136.057 kb on - strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.711 kb on - strand at 136.711 kb on - strand at 136.711 kb on - strand at 136.813 kb on + strand at 136.813 kb on + strand at 136.814 kb on - strand at 136.814 kb on - strand at 136.814 kb on - strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 137.078 kb on + strand, within MPMX19_00125 at 137.079 kb on - strand, within MPMX19_00125 at 137.079 kb on - strand, within MPMX19_00125 at 137.079 kb on - strand, within MPMX19_00125 at 137.079 kb on - strand, within MPMX19_00125 at 137.187 kb on + strand, within MPMX19_00125 at 137.187 kb on + strand, within MPMX19_00125 at 137.187 kb on + strand, within MPMX19_00125 at 137.187 kb on + strand, within MPMX19_00125 at 137.187 kb on + strand, within MPMX19_00125 at 137.187 kb on + strand, within MPMX19_00125 at 137.187 kb on + strand, within MPMX19_00125 at 137.188 kb on - strand, within MPMX19_00125 at 137.188 kb on - strand, within MPMX19_00125 at 137.188 kb on - strand, within MPMX19_00125 at 137.188 kb on - strand, within MPMX19_00125 at 137.188 kb on - strand, within MPMX19_00125 at 137.188 kb on - strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.562 kb on + strand, within MPMX19_00125 at 137.595 kb on + strand, within MPMX19_00125 at 137.595 kb on + strand, within MPMX19_00125 at 137.595 kb on + strand, within MPMX19_00125 at 137.595 kb on + strand, within MPMX19_00125 at 137.596 kb on - strand, within MPMX19_00125 at 137.596 kb on - strand, within MPMX19_00125 at 137.596 kb on - strand, within MPMX19_00125 at 137.596 kb on - strand, within MPMX19_00125 at 137.596 kb on - strand, within MPMX19_00125 at 137.596 kb on - strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 135,606 + MPMX19_00123 0.55 -0.5 135,607 - MPMX19_00123 0.55 -0.8 135,607 - MPMX19_00123 0.55 +1.6 135,607 - MPMX19_00123 0.55 -0.9 135,753 + MPMX19_00123 0.62 -1.1 135,753 + MPMX19_00123 0.62 -1.4 135,753 + MPMX19_00123 0.62 -1.3 135,753 + MPMX19_00123 0.62 -0.8 135,753 + MPMX19_00123 0.62 -1.1 135,754 - MPMX19_00123 0.62 -0.7 135,754 - MPMX19_00123 0.62 -1.3 135,754 - MPMX19_00123 0.62 -1.1 135,754 - MPMX19_00123 0.62 -0.8 135,754 - MPMX19_00123 0.62 +0.3 135,754 - MPMX19_00123 0.62 -0.0 135,754 - MPMX19_00123 0.62 +0.5 135,861 + MPMX19_00123 0.68 -0.7 135,861 + MPMX19_00123 0.68 -0.8 135,862 - MPMX19_00123 0.68 -0.1 136,009 - MPMX19_00123 0.76 +1.6 136,056 + MPMX19_00123 0.78 -1.4 136,056 + MPMX19_00123 0.78 -0.9 136,056 + MPMX19_00123 0.78 +0.1 136,056 + MPMX19_00123 0.78 +1.1 136,056 + MPMX19_00123 0.78 +0.8 136,056 + MPMX19_00123 0.78 -1.2 136,057 - MPMX19_00123 0.78 -1.8 136,057 - MPMX19_00123 0.78 +0.3 136,057 - MPMX19_00123 0.78 -1.8 136,057 - MPMX19_00123 0.78 -0.4 136,057 - MPMX19_00123 0.78 +0.6 136,057 - MPMX19_00123 0.78 +1.0 136,120 + MPMX19_00123 0.81 -1.8 136,120 + MPMX19_00123 0.81 +0.6 136,120 + MPMX19_00123 0.81 -0.0 136,120 + MPMX19_00123 0.81 -1.0 136,120 + MPMX19_00123 0.81 -0.6 136,120 + MPMX19_00123 0.81 -0.7 136,120 + MPMX19_00123 0.81 -1.1 136,120 + MPMX19_00123 0.81 -1.2 136,120 + MPMX19_00123 0.81 +0.1 136,120 + MPMX19_00123 0.81 -1.4 136,120 + MPMX19_00123 0.81 +0.6 136,120 + MPMX19_00123 0.81 -0.4 136,120 + MPMX19_00123 0.81 -1.1 136,120 + MPMX19_00123 0.81 +0.2 136,120 + MPMX19_00123 0.81 +0.7 136,121 - MPMX19_00123 0.81 -1.2 136,121 - MPMX19_00123 0.81 +1.2 136,121 - MPMX19_00123 0.81 -1.4 136,121 - MPMX19_00123 0.81 -0.9 136,121 - MPMX19_00123 0.81 +0.8 136,121 - MPMX19_00123 0.81 -0.8 136,121 - MPMX19_00123 0.81 +1.2 136,121 - MPMX19_00123 0.81 +0.8 136,121 - MPMX19_00123 0.81 -0.0 136,121 - MPMX19_00123 0.81 -0.7 136,121 - MPMX19_00123 0.81 +0.8 136,121 - MPMX19_00123 0.81 +0.8 136,121 - MPMX19_00123 0.81 -0.1 136,121 - MPMX19_00123 0.81 -1.3 136,326 + +0.6 136,326 + -0.0 136,326 + +0.3 136,326 + +0.6 136,326 + +0.4 136,326 + -0.2 136,326 + -0.8 136,326 + -1.2 136,326 + -2.0 136,326 + +0.8 136,326 + +0.1 136,326 + +0.9 136,326 + -0.0 136,327 - -0.5 136,327 - +0.7 136,327 - -1.9 136,327 - +0.7 136,327 - +0.7 136,327 - -1.3 136,327 - -0.3 136,327 - -0.3 136,327 - -0.5 136,327 - +0.1 136,327 - -0.6 136,327 - +0.6 136,327 - -0.4 136,327 - -0.9 136,327 - -0.2 136,327 - -1.2 136,327 - +1.0 136,327 - -1.9 136,346 + -0.7 136,346 + +0.6 136,346 + -1.6 136,346 + +0.1 136,346 + -0.2 136,346 + -0.2 136,346 + +0.7 136,346 + +0.8 136,346 + -1.0 136,346 + +0.7 136,346 + -0.1 136,346 + -0.2 136,346 + -0.1 136,346 + -0.3 136,346 + +0.6 136,346 + +0.8 136,346 + +0.1 136,346 + -2.5 136,346 + -0.9 136,346 + -0.7 136,346 + -1.6 136,346 + -1.0 136,346 + -0.3 136,346 + -0.4 136,346 + +0.4 136,346 + -1.7 136,346 + +1.2 136,346 + -1.6 136,346 + -0.9 136,347 - +0.4 136,347 - +0.8 136,347 - +0.8 136,347 - -0.9 136,347 - +0.4 136,347 - +0.4 136,347 - -0.0 136,347 - +1.0 136,347 - +1.3 136,347 - +1.0 136,347 - +1.4 136,347 - -1.0 136,347 - +0.1 136,347 - -0.3 136,347 - -0.7 136,347 - -0.4 136,347 - -0.8 136,347 - +0.6 136,347 - +0.2 136,347 - +0.6 136,347 - -0.9 136,347 - -0.7 136,347 - +0.1 136,347 - +0.1 136,347 - +0.6 136,347 - -0.7 136,347 - -1.0 136,347 - +0.6 136,347 - -0.2 136,710 + -0.4 136,710 + -0.4 136,710 + -0.6 136,710 + -0.5 136,711 - -1.2 136,711 - -0.7 136,711 - -1.9 136,813 + -1.2 136,813 + -0.7 136,814 - -0.4 136,814 - -0.4 136,814 - -0.4 136,863 + -1.3 136,863 + +0.9 136,863 + -1.0 136,863 + +0.7 136,863 + -1.9 136,863 + -1.7 136,863 + -0.3 136,863 + -1.0 136,863 + -0.6 136,863 + -0.4 136,863 + -1.6 136,864 - -0.4 136,864 - +0.1 136,864 - +1.0 136,864 - -1.2 136,864 - -1.0 136,864 - -0.9 136,864 - -0.3 136,864 - +0.2 136,864 - -0.3 136,864 - +1.3 136,864 - +0.1 136,864 - +0.8 136,864 - -0.2 136,864 - -0.6 136,864 - +0.4 136,864 - -1.6 137,078 + MPMX19_00125 0.27 -0.4 137,079 - MPMX19_00125 0.27 -0.2 137,079 - MPMX19_00125 0.27 -0.8 137,079 - MPMX19_00125 0.27 +0.3 137,079 - MPMX19_00125 0.27 -0.3 137,187 + MPMX19_00125 0.37 +1.9 137,187 + MPMX19_00125 0.37 +0.3 137,187 + MPMX19_00125 0.37 -0.2 137,187 + MPMX19_00125 0.37 -1.5 137,187 + MPMX19_00125 0.37 +0.6 137,187 + MPMX19_00125 0.37 -0.0 137,187 + MPMX19_00125 0.37 -1.9 137,188 - MPMX19_00125 0.37 -1.9 137,188 - MPMX19_00125 0.37 +0.5 137,188 - MPMX19_00125 0.37 -0.0 137,188 - MPMX19_00125 0.37 +0.6 137,188 - MPMX19_00125 0.37 +0.1 137,188 - MPMX19_00125 0.37 -1.0 137,478 + MPMX19_00125 0.65 -1.1 137,478 + MPMX19_00125 0.65 +0.4 137,478 + MPMX19_00125 0.65 -0.8 137,478 + MPMX19_00125 0.65 -0.1 137,478 + MPMX19_00125 0.65 +0.9 137,478 + MPMX19_00125 0.65 +0.4 137,478 + MPMX19_00125 0.65 -0.3 137,478 + MPMX19_00125 0.65 -0.4 137,478 + MPMX19_00125 0.65 -0.4 137,479 - MPMX19_00125 0.65 -1.8 137,479 - MPMX19_00125 0.65 -0.5 137,479 - MPMX19_00125 0.65 +0.2 137,479 - MPMX19_00125 0.65 -1.2 137,479 - MPMX19_00125 0.65 -0.1 137,479 - MPMX19_00125 0.65 -0.8 137,479 - MPMX19_00125 0.65 +0.3 137,479 - MPMX19_00125 0.65 -0.4 137,562 + MPMX19_00125 0.73 -0.9 137,595 + MPMX19_00125 0.76 +1.0 137,595 + MPMX19_00125 0.76 -0.3 137,595 + MPMX19_00125 0.76 -0.9 137,595 + MPMX19_00125 0.76 +0.3 137,596 - MPMX19_00125 0.76 -0.8 137,596 - MPMX19_00125 0.76 -0.3 137,596 - MPMX19_00125 0.76 +1.6 137,596 - MPMX19_00125 0.76 +0.4 137,596 - MPMX19_00125 0.76 -0.5 137,596 - MPMX19_00125 0.76 -0.9 137,613 + MPMX19_00125 0.77 -0.9 137,613 + MPMX19_00125 0.77 -0.0 137,613 + MPMX19_00125 0.77 -0.8 137,613 + MPMX19_00125 0.77 -0.0 137,613 + MPMX19_00125 0.77 -0.1 137,613 + MPMX19_00125 0.77 +0.3 137,613 + MPMX19_00125 0.77 -0.9 137,613 + MPMX19_00125 0.77 -0.0 137,613 + MPMX19_00125 0.77 -1.4 137,614 - MPMX19_00125 0.78 +0.2 137,614 - MPMX19_00125 0.78 +0.3 137,614 - MPMX19_00125 0.78 -0.0 137,614 - MPMX19_00125 0.78 +1.1 137,614 - MPMX19_00125 0.78 +2.0 137,614 - MPMX19_00125 0.78 -0.2 137,614 - MPMX19_00125 0.78 +1.6 137,614 - MPMX19_00125 0.78 -0.0 137,614 - MPMX19_00125 0.78 -1.3 137,614 - MPMX19_00125 0.78 -1.1 137,614 - MPMX19_00125 0.78 -0.3 137,614 - MPMX19_00125 0.78 +0.1 137,614 - MPMX19_00125 0.78 +2.9 137,614 - MPMX19_00125 0.78 -3.4
Or see this region's nucleotide sequence