Strain Fitness in Methylophilus sp. DMC18 around GFF804

Experiment: D-Glucose and Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF803 and GFF804 are separated by 42 nucleotidesGFF804 and GFF805 are separated by 55 nucleotides GFF803 - hypothetical protein, at 42,170 to 43,021 GFF803 GFF804 - hypothetical protein, at 43,064 to 43,648 GFF804 GFF805 - hypothetical protein, at 43,704 to 44,951 GFF805 Position (kb) 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1at 42.079 kb on + strandat 42.080 kb on - strandat 42.080 kb on - strandat 42.093 kb on - strandat 42.195 kb on - strandat 42.268 kb on - strand, within GFF803at 42.292 kb on + strand, within GFF803at 42.292 kb on + strand, within GFF803at 42.292 kb on + strand, within GFF803at 42.293 kb on - strand, within GFF803at 42.293 kb on - strand, within GFF803at 42.293 kb on - strand, within GFF803at 42.293 kb on - strand, within GFF803at 42.293 kb on - strand, within GFF803at 42.293 kb on - strand, within GFF803at 42.293 kb on - strand, within GFF803at 42.342 kb on + strand, within GFF803at 42.343 kb on - strand, within GFF803at 42.343 kb on - strand, within GFF803at 42.343 kb on - strand, within GFF803at 42.350 kb on - strand, within GFF803at 42.430 kb on - strand, within GFF803at 42.430 kb on - strand, within GFF803at 42.430 kb on - strand, within GFF803at 42.430 kb on - strand, within GFF803at 42.435 kb on + strand, within GFF803at 42.435 kb on + strand, within GFF803at 42.435 kb on + strand, within GFF803at 42.435 kb on + strand, within GFF803at 42.435 kb on + strand, within GFF803at 42.436 kb on - strand, within GFF803at 42.436 kb on - strand, within GFF803at 42.436 kb on - strand, within GFF803at 42.436 kb on - strand, within GFF803at 42.436 kb on - strand, within GFF803at 42.436 kb on - strand, within GFF803at 42.437 kb on + strand, within GFF803at 42.437 kb on + strand, within GFF803at 42.437 kb on + strand, within GFF803at 42.438 kb on - strand, within GFF803at 42.438 kb on - strand, within GFF803at 42.438 kb on - strand, within GFF803at 42.438 kb on - strand, within GFF803at 42.438 kb on - strand, within GFF803at 42.622 kb on + strand, within GFF803at 42.623 kb on - strand, within GFF803at 42.624 kb on + strand, within GFF803at 42.625 kb on - strand, within GFF803at 42.625 kb on - strand, within GFF803at 42.625 kb on - strand, within GFF803at 42.625 kb on - strand, within GFF803at 42.702 kb on - strand, within GFF803at 42.743 kb on + strand, within GFF803at 42.744 kb on - strand, within GFF803at 42.744 kb on - strand, within GFF803at 42.763 kb on + strand, within GFF803at 42.763 kb on + strand, within GFF803at 42.763 kb on + strand, within GFF803at 42.763 kb on + strand, within GFF803at 42.763 kb on + strand, within GFF803at 42.764 kb on - strand, within GFF803at 42.764 kb on - strand, within GFF803at 42.765 kb on + strand, within GFF803at 42.765 kb on + strand, within GFF803at 42.765 kb on + strand, within GFF803at 42.766 kb on - strand, within GFF803at 42.766 kb on - strand, within GFF803at 42.766 kb on - strand, within GFF803at 42.766 kb on - strand, within GFF803at 42.766 kb on - strand, within GFF803at 42.766 kb on - strand, within GFF803at 42.766 kb on - strand, within GFF803at 42.816 kb on - strand, within GFF803at 42.846 kb on - strand, within GFF803at 42.897 kb on + strand, within GFF803at 42.897 kb on + strand, within GFF803at 42.950 kb on - strandat 42.981 kb on - strandat 43.042 kb on + strandat 43.055 kb on - strandat 43.078 kb on + strandat 43.078 kb on + strandat 43.079 kb on - strandat 43.079 kb on - strandat 43.079 kb on - strandat 43.079 kb on - strandat 43.094 kb on - strandat 43.094 kb on - strandat 43.119 kb on + strandat 43.120 kb on - strandat 43.120 kb on - strandat 43.120 kb on - strandat 43.155 kb on + strand, within GFF804at 43.155 kb on + strand, within GFF804at 43.155 kb on + strand, within GFF804at 43.156 kb on - strand, within GFF804at 43.156 kb on - strand, within GFF804at 43.229 kb on + strand, within GFF804at 43.230 kb on - strand, within GFF804at 43.230 kb on - strand, within GFF804at 43.230 kb on - strand, within GFF804at 43.230 kb on - strand, within GFF804at 43.230 kb on - strand, within GFF804at 43.236 kb on + strand, within GFF804at 43.236 kb on + strand, within GFF804at 43.237 kb on - strand, within GFF804at 43.237 kb on - strand, within GFF804at 43.237 kb on - strand, within GFF804at 43.237 kb on - strand, within GFF804at 43.237 kb on - strand, within GFF804at 43.319 kb on - strand, within GFF804at 43.320 kb on + strand, within GFF804at 43.321 kb on - strand, within GFF804at 43.345 kb on - strand, within GFF804at 43.368 kb on + strand, within GFF804at 43.375 kb on + strand, within GFF804at 43.376 kb on - strand, within GFF804at 43.376 kb on - strand, within GFF804at 43.437 kb on + strand, within GFF804at 43.437 kb on + strand, within GFF804at 43.437 kb on + strand, within GFF804at 43.437 kb on + strand, within GFF804at 43.437 kb on + strand, within GFF804at 43.437 kb on + strand, within GFF804at 43.437 kb on + strand, within GFF804at 43.437 kb on + strand, within GFF804at 43.438 kb on - strand, within GFF804at 43.438 kb on - strand, within GFF804at 43.438 kb on - strand, within GFF804at 43.438 kb on - strand, within GFF804at 43.438 kb on - strand, within GFF804at 43.501 kb on - strand, within GFF804at 43.505 kb on + strand, within GFF804at 43.506 kb on - strand, within GFF804at 43.506 kb on - strand, within GFF804at 43.506 kb on - strand, within GFF804at 43.506 kb on - strand, within GFF804at 43.509 kb on + strand, within GFF804at 43.509 kb on + strand, within GFF804at 43.510 kb on - strand, within GFF804at 43.540 kb on - strand, within GFF804at 43.540 kb on - strand, within GFF804at 43.625 kb on + strandat 43.626 kb on - strandat 43.626 kb on - strandat 43.630 kb on - strandat 43.630 kb on - strandat 43.634 kb on + strandat 43.635 kb on - strandat 43.635 kb on - strandat 43.635 kb on - strandat 43.635 kb on - strandat 43.697 kb on - strandat 43.705 kb on + strandat 43.732 kb on + strandat 43.762 kb on + strandat 43.762 kb on + strandat 43.762 kb on + strandat 43.762 kb on + strandat 43.763 kb on - strandat 43.763 kb on - strandat 43.763 kb on - strandat 43.763 kb on - strandat 43.795 kb on - strandat 43.795 kb on - strandat 43.878 kb on + strand, within GFF805at 43.996 kb on - strand, within GFF805at 44.069 kb on + strand, within GFF805at 44.070 kb on - strand, within GFF805at 44.070 kb on - strand, within GFF805at 44.070 kb on - strand, within GFF805at 44.070 kb on - strand, within GFF805at 44.119 kb on + strand, within GFF805at 44.120 kb on - strand, within GFF805at 44.279 kb on + strand, within GFF805at 44.328 kb on - strand, within GFF805at 44.370 kb on + strand, within GFF805at 44.371 kb on - strand, within GFF805at 44.408 kb on + strand, within GFF805at 44.408 kb on + strand, within GFF805at 44.409 kb on - strand, within GFF805at 44.409 kb on - strand, within GFF805at 44.409 kb on - strand, within GFF805at 44.409 kb on - strand, within GFF805at 44.437 kb on + strand, within GFF805at 44.437 kb on + strand, within GFF805at 44.438 kb on - strand, within GFF805

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and Methanol (C)
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42,079 + -0.1
42,080 - -0.5
42,080 - -0.4
42,093 - -0.3
42,195 - -1.1
42,268 - GFF803 0.12 -0.5
42,292 + GFF803 0.14 -1.4
42,292 + GFF803 0.14 -1.1
42,292 + GFF803 0.14 -0.6
42,293 - GFF803 0.14 -0.8
42,293 - GFF803 0.14 -0.3
42,293 - GFF803 0.14 +0.7
42,293 - GFF803 0.14 -0.8
42,293 - GFF803 0.14 -1.2
42,293 - GFF803 0.14 -1.7
42,293 - GFF803 0.14 +0.2
42,342 + GFF803 0.20 +0.4
42,343 - GFF803 0.20 -0.3
42,343 - GFF803 0.20 +0.2
42,343 - GFF803 0.20 -1.1
42,350 - GFF803 0.21 -0.1
42,430 - GFF803 0.31 +0.7
42,430 - GFF803 0.31 -0.7
42,430 - GFF803 0.31 -0.2
42,430 - GFF803 0.31 -0.5
42,435 + GFF803 0.31 -0.0
42,435 + GFF803 0.31 +0.4
42,435 + GFF803 0.31 -1.1
42,435 + GFF803 0.31 -0.2
42,435 + GFF803 0.31 +0.2
42,436 - GFF803 0.31 +0.1
42,436 - GFF803 0.31 -0.7
42,436 - GFF803 0.31 +0.5
42,436 - GFF803 0.31 -1.0
42,436 - GFF803 0.31 -1.1
42,436 - GFF803 0.31 -1.2
42,437 + GFF803 0.31 -0.7
42,437 + GFF803 0.31 -1.4
42,437 + GFF803 0.31 -1.2
42,438 - GFF803 0.31 -1.4
42,438 - GFF803 0.31 -1.7
42,438 - GFF803 0.31 -0.7
42,438 - GFF803 0.31 -0.7
42,438 - GFF803 0.31 -1.1
42,622 + GFF803 0.53 -1.4
42,623 - GFF803 0.53 -0.5
42,624 + GFF803 0.53 +0.3
42,625 - GFF803 0.53 -0.4
42,625 - GFF803 0.53 -3.1
42,625 - GFF803 0.53 -1.9
42,625 - GFF803 0.53 -3.1
42,702 - GFF803 0.62 -1.0
42,743 + GFF803 0.67 -0.5
42,744 - GFF803 0.67 +0.2
42,744 - GFF803 0.67 -0.9
42,763 + GFF803 0.70 -0.1
42,763 + GFF803 0.70 +0.5
42,763 + GFF803 0.70 -0.5
42,763 + GFF803 0.70 +1.2
42,763 + GFF803 0.70 -1.9
42,764 - GFF803 0.70 -1.0
42,764 - GFF803 0.70 -0.1
42,765 + GFF803 0.70 -0.9
42,765 + GFF803 0.70 -1.5
42,765 + GFF803 0.70 -0.1
42,766 - GFF803 0.70 -2.2
42,766 - GFF803 0.70 +0.3
42,766 - GFF803 0.70 -1.0
42,766 - GFF803 0.70 +0.6
42,766 - GFF803 0.70 -2.0
42,766 - GFF803 0.70 +0.2
42,766 - GFF803 0.70 +0.5
42,816 - GFF803 0.76 -1.4
42,846 - GFF803 0.79 -0.8
42,897 + GFF803 0.85 -0.3
42,897 + GFF803 0.85 -1.2
42,950 - -1.1
42,981 - +0.0
43,042 + -0.8
43,055 - -1.4
43,078 + +0.3
43,078 + -1.1
43,079 - -1.2
43,079 - -2.2
43,079 - -1.6
43,079 - -1.2
43,094 - -0.2
43,094 - -1.7
43,119 + -0.4
43,120 - -1.4
43,120 - +0.2
43,120 - -1.2
43,155 + GFF804 0.16 +0.3
43,155 + GFF804 0.16 -1.5
43,155 + GFF804 0.16 -1.1
43,156 - GFF804 0.16 -1.1
43,156 - GFF804 0.16 -0.4
43,229 + GFF804 0.28 -0.8
43,230 - GFF804 0.28 -1.0
43,230 - GFF804 0.28 -0.1
43,230 - GFF804 0.28 -0.7
43,230 - GFF804 0.28 -0.1
43,230 - GFF804 0.28 -0.1
43,236 + GFF804 0.29 -1.7
43,236 + GFF804 0.29 -1.1
43,237 - GFF804 0.30 -0.9
43,237 - GFF804 0.30 -1.0
43,237 - GFF804 0.30 -0.5
43,237 - GFF804 0.30 -0.9
43,237 - GFF804 0.30 -1.9
43,319 - GFF804 0.44 -0.2
43,320 + GFF804 0.44 +0.9
43,321 - GFF804 0.44 -0.4
43,345 - GFF804 0.48 +0.9
43,368 + GFF804 0.52 -1.1
43,375 + GFF804 0.53 -1.0
43,376 - GFF804 0.53 +0.4
43,376 - GFF804 0.53 -1.7
43,437 + GFF804 0.64 +0.7
43,437 + GFF804 0.64 +0.5
43,437 + GFF804 0.64 -1.0
43,437 + GFF804 0.64 -1.8
43,437 + GFF804 0.64 -0.8
43,437 + GFF804 0.64 -0.2
43,437 + GFF804 0.64 +0.3
43,437 + GFF804 0.64 -0.1
43,438 - GFF804 0.64 -0.3
43,438 - GFF804 0.64 +0.3
43,438 - GFF804 0.64 -1.4
43,438 - GFF804 0.64 -1.0
43,438 - GFF804 0.64 +0.2
43,501 - GFF804 0.75 -1.7
43,505 + GFF804 0.75 -1.4
43,506 - GFF804 0.76 -0.3
43,506 - GFF804 0.76 -0.8
43,506 - GFF804 0.76 -0.7
43,506 - GFF804 0.76 -3.2
43,509 + GFF804 0.76 -0.9
43,509 + GFF804 0.76 -1.1
43,510 - GFF804 0.76 +0.2
43,540 - GFF804 0.81 +0.7
43,540 - GFF804 0.81 -1.4
43,625 + -1.1
43,626 - -1.1
43,626 - -0.7
43,630 - +1.0
43,630 - -0.1
43,634 + -1.1
43,635 - -1.4
43,635 - -1.0
43,635 - -0.2
43,635 - -2.8
43,697 - +1.2
43,705 + -1.9
43,732 + -0.7
43,762 + -1.9
43,762 + -0.1
43,762 + -0.9
43,762 + +0.5
43,763 - +1.2
43,763 - -0.8
43,763 - -0.7
43,763 - -0.9
43,795 - -0.9
43,795 - -0.3
43,878 + GFF805 0.14 -1.7
43,996 - GFF805 0.23 -0.2
44,069 + GFF805 0.29 -0.1
44,070 - GFF805 0.29 -0.4
44,070 - GFF805 0.29 -0.7
44,070 - GFF805 0.29 -0.5
44,070 - GFF805 0.29 -0.9
44,119 + GFF805 0.33 -2.1
44,120 - GFF805 0.33 -0.1
44,279 + GFF805 0.46 -1.1
44,328 - GFF805 0.50 +0.5
44,370 + GFF805 0.53 -1.2
44,371 - GFF805 0.53 -0.7
44,408 + GFF805 0.56 -1.4
44,408 + GFF805 0.56 -2.1
44,409 - GFF805 0.56 +0.1
44,409 - GFF805 0.56 -0.4
44,409 - GFF805 0.56 +0.3
44,409 - GFF805 0.56 +0.1
44,437 + GFF805 0.59 -1.1
44,437 + GFF805 0.59 +0.2
44,438 - GFF805 0.59 -0.9

Or see this region's nucleotide sequence