Strain Fitness in Methylophilus sp. DMC18 around GFF2653

Experiment: D-Glucose and Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2651 and GFF2652 are separated by 11 nucleotidesGFF2652 and GFF2653 are separated by 72 nucleotidesGFF2653 and GFF2654 are separated by 65 nucleotides GFF2651 - hypothetical protein, at 45,137 to 45,349 GFF2651 GFF2652 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 45,361 to 46,245 GFF2652 GFF2653 - Sodium-potassium/proton antiporter ChaA, at 46,318 to 47,412 GFF2653 GFF2654 - Thiosulfate sulfurtransferase GlpE, at 47,478 to 48,419 GFF2654 GFF2655 - Cation efflux system protein CusA, at 48,412 to 51,606 GFF2655 Position (kb) 46 47 48Strain fitness (log2 ratio) -3 -2 -1 0 1at 45.344 kb on + strandat 45.344 kb on + strandat 45.344 kb on + strandat 45.344 kb on + strandat 45.344 kb on + strandat 45.345 kb on - strandat 45.345 kb on - strandat 45.345 kb on - strandat 45.345 kb on - strandat 45.345 kb on - strandat 45.376 kb on - strandat 45.401 kb on + strandat 45.401 kb on + strandat 45.402 kb on - strandat 45.402 kb on - strandat 45.402 kb on - strandat 45.402 kb on - strandat 45.402 kb on - strandat 45.454 kb on + strand, within GFF2652at 45.455 kb on - strand, within GFF2652at 45.455 kb on - strand, within GFF2652at 45.455 kb on - strand, within GFF2652at 45.481 kb on + strand, within GFF2652at 45.525 kb on + strand, within GFF2652at 45.526 kb on - strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.581 kb on - strand, within GFF2652at 45.581 kb on - strand, within GFF2652at 45.581 kb on - strand, within GFF2652at 45.581 kb on - strand, within GFF2652at 45.581 kb on - strand, within GFF2652at 45.581 kb on - strand, within GFF2652at 45.581 kb on - strand, within GFF2652at 45.602 kb on + strand, within GFF2652at 45.602 kb on + strand, within GFF2652at 45.602 kb on + strand, within GFF2652at 45.603 kb on - strand, within GFF2652at 45.603 kb on - strand, within GFF2652at 45.603 kb on - strand, within GFF2652at 45.612 kb on - strand, within GFF2652at 45.626 kb on - strand, within GFF2652at 45.626 kb on - strand, within GFF2652at 45.756 kb on + strand, within GFF2652at 45.840 kb on + strand, within GFF2652at 45.841 kb on - strand, within GFF2652at 45.841 kb on - strand, within GFF2652at 45.841 kb on - strand, within GFF2652at 45.958 kb on + strand, within GFF2652at 45.958 kb on + strand, within GFF2652at 45.959 kb on - strand, within GFF2652at 45.959 kb on - strand, within GFF2652at 45.959 kb on - strand, within GFF2652at 45.959 kb on - strand, within GFF2652at 46.117 kb on - strand, within GFF2652at 46.134 kb on + strand, within GFF2652at 46.134 kb on + strand, within GFF2652at 46.243 kb on + strandat 46.284 kb on + strandat 46.285 kb on - strandat 46.285 kb on - strandat 46.311 kb on + strandat 46.312 kb on - strandat 46.375 kb on + strandat 46.375 kb on + strandat 46.375 kb on + strandat 46.376 kb on - strandat 46.398 kb on + strandat 46.461 kb on + strand, within GFF2653at 46.463 kb on + strand, within GFF2653at 46.463 kb on + strand, within GFF2653at 46.464 kb on - strand, within GFF2653at 46.481 kb on + strand, within GFF2653at 46.481 kb on + strand, within GFF2653at 46.482 kb on - strand, within GFF2653at 46.498 kb on + strand, within GFF2653at 46.498 kb on + strand, within GFF2653at 46.498 kb on + strand, within GFF2653at 46.498 kb on + strand, within GFF2653at 46.499 kb on - strand, within GFF2653at 46.499 kb on - strand, within GFF2653at 46.525 kb on + strand, within GFF2653at 46.575 kb on + strand, within GFF2653at 46.575 kb on + strand, within GFF2653at 46.575 kb on + strand, within GFF2653at 46.575 kb on + strand, within GFF2653at 46.576 kb on - strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.597 kb on - strand, within GFF2653at 46.597 kb on - strand, within GFF2653at 46.597 kb on - strand, within GFF2653at 46.597 kb on - strand, within GFF2653at 46.597 kb on - strand, within GFF2653at 46.630 kb on + strand, within GFF2653at 46.631 kb on - strand, within GFF2653at 46.696 kb on + strand, within GFF2653at 46.697 kb on - strand, within GFF2653at 46.697 kb on - strand, within GFF2653at 46.711 kb on + strand, within GFF2653at 46.711 kb on + strand, within GFF2653at 46.712 kb on - strand, within GFF2653at 46.712 kb on - strand, within GFF2653at 46.712 kb on - strand, within GFF2653at 46.731 kb on + strand, within GFF2653at 46.731 kb on + strand, within GFF2653at 46.731 kb on + strand, within GFF2653at 46.731 kb on + strand, within GFF2653at 46.731 kb on + strand, within GFF2653at 46.731 kb on + strand, within GFF2653at 46.732 kb on - strand, within GFF2653at 46.732 kb on - strand, within GFF2653at 46.732 kb on - strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.738 kb on - strand, within GFF2653at 46.814 kb on - strand, within GFF2653at 46.849 kb on + strand, within GFF2653at 46.849 kb on + strand, within GFF2653at 46.850 kb on - strand, within GFF2653at 46.850 kb on - strand, within GFF2653at 46.850 kb on - strand, within GFF2653at 46.850 kb on - strand, within GFF2653at 46.891 kb on + strand, within GFF2653at 46.900 kb on + strand, within GFF2653at 46.900 kb on + strand, within GFF2653at 46.956 kb on + strand, within GFF2653at 46.956 kb on + strand, within GFF2653at 46.956 kb on + strand, within GFF2653at 46.956 kb on + strand, within GFF2653at 46.957 kb on - strand, within GFF2653at 46.981 kb on + strand, within GFF2653at 46.982 kb on - strand, within GFF2653at 47.037 kb on + strand, within GFF2653at 47.037 kb on + strand, within GFF2653at 47.038 kb on - strand, within GFF2653at 47.101 kb on - strand, within GFF2653at 47.101 kb on - strand, within GFF2653at 47.166 kb on - strand, within GFF2653at 47.172 kb on + strand, within GFF2653at 47.319 kb on + strandat 47.319 kb on + strandat 47.320 kb on - strandat 47.403 kb on - strandat 47.403 kb on - strandat 47.477 kb on + strandat 47.477 kb on + strandat 47.477 kb on + strandat 47.477 kb on + strandat 47.478 kb on - strandat 47.478 kb on - strandat 47.508 kb on + strandat 47.509 kb on - strandat 47.536 kb on + strandat 47.537 kb on - strandat 47.616 kb on + strand, within GFF2654at 47.616 kb on + strand, within GFF2654at 47.617 kb on - strand, within GFF2654at 47.722 kb on + strand, within GFF2654at 47.776 kb on - strand, within GFF2654at 47.834 kb on + strand, within GFF2654at 47.835 kb on - strand, within GFF2654at 47.871 kb on + strand, within GFF2654at 47.871 kb on + strand, within GFF2654at 47.911 kb on + strand, within GFF2654at 47.911 kb on + strand, within GFF2654at 47.912 kb on - strand, within GFF2654at 48.016 kb on + strand, within GFF2654at 48.016 kb on + strand, within GFF2654at 48.016 kb on + strand, within GFF2654at 48.036 kb on - strand, within GFF2654at 48.036 kb on - strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.239 kb on + strand, within GFF2654at 48.260 kb on + strand, within GFF2654at 48.261 kb on - strand, within GFF2654at 48.267 kb on + strand, within GFF2654at 48.267 kb on + strand, within GFF2654at 48.268 kb on - strand, within GFF2654at 48.268 kb on - strand, within GFF2654at 48.268 kb on - strand, within GFF2654

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and Methanol (C)
remove
45,344 + -1.3
45,344 + -1.2
45,344 + +0.3
45,344 + -1.3
45,344 + +0.2
45,345 - -1.6
45,345 - +0.7
45,345 - +0.7
45,345 - -1.8
45,345 - -0.5
45,376 - -0.6
45,401 + -1.0
45,401 + +0.4
45,402 - -1.2
45,402 - -0.3
45,402 - -1.8
45,402 - -0.4
45,402 - -0.9
45,454 + GFF2652 0.11 -0.2
45,455 - GFF2652 0.11 -0.0
45,455 - GFF2652 0.11 -3.6
45,455 - GFF2652 0.11 +0.2
45,481 + GFF2652 0.14 -0.7
45,525 + GFF2652 0.19 +0.1
45,526 - GFF2652 0.19 +0.1
45,580 + GFF2652 0.25 -0.8
45,580 + GFF2652 0.25 -2.3
45,580 + GFF2652 0.25 -1.7
45,580 + GFF2652 0.25 -0.4
45,580 + GFF2652 0.25 -0.3
45,580 + GFF2652 0.25 +0.3
45,580 + GFF2652 0.25 -1.3
45,580 + GFF2652 0.25 -0.7
45,580 + GFF2652 0.25 +0.3
45,581 - GFF2652 0.25 -0.7
45,581 - GFF2652 0.25 -0.9
45,581 - GFF2652 0.25 +0.2
45,581 - GFF2652 0.25 -0.6
45,581 - GFF2652 0.25 +0.7
45,581 - GFF2652 0.25 -0.2
45,581 - GFF2652 0.25 -0.0
45,602 + GFF2652 0.27 -0.7
45,602 + GFF2652 0.27 -0.5
45,602 + GFF2652 0.27 -0.7
45,603 - GFF2652 0.27 -0.1
45,603 - GFF2652 0.27 -1.2
45,603 - GFF2652 0.27 -2.5
45,612 - GFF2652 0.28 -1.0
45,626 - GFF2652 0.30 -1.8
45,626 - GFF2652 0.30 -1.0
45,756 + GFF2652 0.45 -0.6
45,840 + GFF2652 0.54 -0.7
45,841 - GFF2652 0.54 -0.6
45,841 - GFF2652 0.54 -0.3
45,841 - GFF2652 0.54 -0.3
45,958 + GFF2652 0.67 +0.3
45,958 + GFF2652 0.67 +0.4
45,959 - GFF2652 0.68 -0.3
45,959 - GFF2652 0.68 -1.1
45,959 - GFF2652 0.68 -1.0
45,959 - GFF2652 0.68 -1.0
46,117 - GFF2652 0.85 -0.7
46,134 + GFF2652 0.87 +0.2
46,134 + GFF2652 0.87 +0.3
46,243 + -0.3
46,284 + -1.3
46,285 - -0.4
46,285 - -1.1
46,311 + -0.0
46,312 - +0.7
46,375 + -1.8
46,375 + -1.1
46,375 + -0.0
46,376 - -1.0
46,398 + -0.1
46,461 + GFF2653 0.13 +0.1
46,463 + GFF2653 0.13 -1.2
46,463 + GFF2653 0.13 -0.9
46,464 - GFF2653 0.13 +0.5
46,481 + GFF2653 0.15 -1.1
46,481 + GFF2653 0.15 -0.8
46,482 - GFF2653 0.15 +0.3
46,498 + GFF2653 0.16 -0.8
46,498 + GFF2653 0.16 +0.3
46,498 + GFF2653 0.16 -0.7
46,498 + GFF2653 0.16 -1.3
46,499 - GFF2653 0.17 -0.7
46,499 - GFF2653 0.17 -0.0
46,525 + GFF2653 0.19 +0.3
46,575 + GFF2653 0.23 -0.0
46,575 + GFF2653 0.23 -1.0
46,575 + GFF2653 0.23 +0.4
46,575 + GFF2653 0.23 -1.0
46,576 - GFF2653 0.24 -0.5
46,596 + GFF2653 0.25 -0.2
46,596 + GFF2653 0.25 -0.0
46,596 + GFF2653 0.25 -1.2
46,596 + GFF2653 0.25 -1.0
46,596 + GFF2653 0.25 -1.0
46,596 + GFF2653 0.25 -1.1
46,596 + GFF2653 0.25 -0.8
46,596 + GFF2653 0.25 +1.3
46,597 - GFF2653 0.25 -0.4
46,597 - GFF2653 0.25 -0.4
46,597 - GFF2653 0.25 -0.1
46,597 - GFF2653 0.25 -0.5
46,597 - GFF2653 0.25 +0.4
46,630 + GFF2653 0.28 -0.6
46,631 - GFF2653 0.29 -0.2
46,696 + GFF2653 0.35 -0.3
46,697 - GFF2653 0.35 -0.5
46,697 - GFF2653 0.35 -0.0
46,711 + GFF2653 0.36 -1.0
46,711 + GFF2653 0.36 -1.6
46,712 - GFF2653 0.36 +0.1
46,712 - GFF2653 0.36 -0.3
46,712 - GFF2653 0.36 -1.2
46,731 + GFF2653 0.38 -0.8
46,731 + GFF2653 0.38 +0.4
46,731 + GFF2653 0.38 -0.5
46,731 + GFF2653 0.38 -0.8
46,731 + GFF2653 0.38 -0.2
46,731 + GFF2653 0.38 -0.0
46,732 - GFF2653 0.38 -0.7
46,732 - GFF2653 0.38 +0.7
46,732 - GFF2653 0.38 -0.2
46,735 + GFF2653 0.38 -0.4
46,735 + GFF2653 0.38 +1.0
46,735 + GFF2653 0.38 +0.2
46,735 + GFF2653 0.38 -0.1
46,735 + GFF2653 0.38 -1.0
46,735 + GFF2653 0.38 -1.0
46,735 + GFF2653 0.38 -2.2
46,735 + GFF2653 0.38 +1.0
46,735 + GFF2653 0.38 -0.3
46,735 + GFF2653 0.38 -1.1
46,735 + GFF2653 0.38 -0.6
46,735 + GFF2653 0.38 -0.4
46,735 + GFF2653 0.38 -1.5
46,736 - GFF2653 0.38 -0.7
46,736 - GFF2653 0.38 -1.0
46,736 - GFF2653 0.38 +0.3
46,736 - GFF2653 0.38 -0.5
46,736 - GFF2653 0.38 -0.3
46,736 - GFF2653 0.38 -0.3
46,736 - GFF2653 0.38 +0.0
46,736 - GFF2653 0.38 -0.0
46,736 - GFF2653 0.38 +0.4
46,736 - GFF2653 0.38 -1.2
46,736 - GFF2653 0.38 -2.0
46,738 - GFF2653 0.38 -1.0
46,814 - GFF2653 0.45 -1.0
46,849 + GFF2653 0.48 -0.8
46,849 + GFF2653 0.48 +0.2
46,850 - GFF2653 0.49 -0.6
46,850 - GFF2653 0.49 -1.8
46,850 - GFF2653 0.49 -1.0
46,850 - GFF2653 0.49 -0.2
46,891 + GFF2653 0.52 -1.4
46,900 + GFF2653 0.53 +0.1
46,900 + GFF2653 0.53 -1.9
46,956 + GFF2653 0.58 +1.0
46,956 + GFF2653 0.58 -0.6
46,956 + GFF2653 0.58 -0.3
46,956 + GFF2653 0.58 -0.7
46,957 - GFF2653 0.58 +0.6
46,981 + GFF2653 0.61 -0.9
46,982 - GFF2653 0.61 -0.7
47,037 + GFF2653 0.66 -0.5
47,037 + GFF2653 0.66 -0.2
47,038 - GFF2653 0.66 -0.3
47,101 - GFF2653 0.72 -0.0
47,101 - GFF2653 0.72 -1.1
47,166 - GFF2653 0.77 -0.8
47,172 + GFF2653 0.78 -0.0
47,319 + -0.8
47,319 + -0.9
47,320 - -0.5
47,403 - -1.3
47,403 - -0.7
47,477 + -1.5
47,477 + +1.0
47,477 + -2.7
47,477 + +1.0
47,478 - -0.1
47,478 - +1.3
47,508 + +0.4
47,509 - +1.0
47,536 + -0.4
47,537 - -1.3
47,616 + GFF2654 0.15 -1.2
47,616 + GFF2654 0.15 -0.0
47,617 - GFF2654 0.15 -1.3
47,722 + GFF2654 0.26 +0.3
47,776 - GFF2654 0.32 -0.5
47,834 + GFF2654 0.38 -0.0
47,835 - GFF2654 0.38 -0.0
47,871 + GFF2654 0.42 -0.4
47,871 + GFF2654 0.42 -0.0
47,911 + GFF2654 0.46 +0.7
47,911 + GFF2654 0.46 -0.7
47,912 - GFF2654 0.46 -1.7
48,016 + GFF2654 0.57 -0.0
48,016 + GFF2654 0.57 -1.0
48,016 + GFF2654 0.57 -2.0
48,036 - GFF2654 0.59 +0.6
48,036 - GFF2654 0.59 -1.2
48,113 + GFF2654 0.67 -0.4
48,113 + GFF2654 0.67 -0.0
48,113 + GFF2654 0.67 -0.6
48,113 + GFF2654 0.67 +0.6
48,113 + GFF2654 0.67 +0.3
48,113 + GFF2654 0.67 -0.1
48,113 + GFF2654 0.67 -0.4
48,113 + GFF2654 0.67 +0.7
48,113 + GFF2654 0.67 -1.9
48,113 + GFF2654 0.67 -0.8
48,113 + GFF2654 0.67 -0.0
48,114 - GFF2654 0.68 -1.8
48,114 - GFF2654 0.68 -0.7
48,114 - GFF2654 0.68 -0.1
48,114 - GFF2654 0.68 -0.8
48,114 - GFF2654 0.68 -0.9
48,114 - GFF2654 0.68 -1.3
48,114 - GFF2654 0.68 -0.2
48,114 - GFF2654 0.68 -1.0
48,239 + GFF2654 0.81 -1.0
48,260 + GFF2654 0.83 -1.2
48,261 - GFF2654 0.83 -0.7
48,267 + GFF2654 0.84 -0.9
48,267 + GFF2654 0.84 -0.5
48,268 - GFF2654 0.84 -0.7
48,268 - GFF2654 0.84 -1.2
48,268 - GFF2654 0.84 -0.2

Or see this region's nucleotide sequence