Strain Fitness in Methylophilus sp. DMC18 around GFF1252

Experiment: D-Glucose and Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1251 and GFF1252 are separated by 95 nucleotidesGFF1252 and GFF1253 are separated by 34 nucleotides GFF1251 - N-acetylmuramoyl-L-alanine amidase AmiC, at 502,275 to 503,600 GFF1251 GFF1252 - hypothetical protein, at 503,696 to 505,219 GFF1252 GFF1253 - DNA mismatch repair protein MutL, at 505,254 to 507,143 GFF1253 Position (kb) 503 504 505 506Strain fitness (log2 ratio) -3 -2 -1 0 1at 503.435 kb on + strand, within GFF1251at 503.565 kb on + strandat 503.565 kb on + strandat 503.565 kb on + strandat 503.566 kb on - strandat 503.566 kb on - strandat 503.566 kb on - strandat 503.567 kb on + strandat 503.567 kb on + strandat 503.567 kb on + strandat 503.567 kb on + strandat 503.567 kb on + strandat 503.568 kb on - strandat 503.568 kb on - strandat 503.568 kb on - strandat 503.568 kb on - strandat 503.598 kb on + strandat 503.599 kb on - strandat 503.599 kb on - strandat 503.606 kb on - strandat 503.609 kb on + strandat 503.609 kb on + strandat 503.610 kb on - strandat 503.643 kb on - strandat 503.672 kb on + strandat 503.673 kb on - strandat 503.673 kb on - strandat 503.673 kb on - strandat 503.673 kb on - strandat 503.673 kb on - strandat 503.685 kb on + strandat 503.685 kb on + strandat 503.685 kb on + strandat 503.686 kb on - strandat 503.694 kb on + strandat 503.694 kb on + strandat 503.694 kb on + strandat 503.694 kb on + strandat 503.695 kb on - strandat 503.695 kb on - strandat 503.697 kb on + strandat 503.697 kb on + strandat 503.698 kb on - strandat 503.703 kb on + strandat 503.703 kb on + strandat 503.704 kb on - strandat 503.740 kb on - strandat 503.740 kb on - strandat 503.771 kb on - strandat 503.771 kb on - strandat 503.833 kb on - strandat 503.838 kb on + strandat 503.839 kb on - strandat 503.843 kb on + strandat 503.851 kb on + strand, within GFF1252at 503.851 kb on + strand, within GFF1252at 503.851 kb on + strand, within GFF1252at 503.851 kb on + strand, within GFF1252at 503.852 kb on - strand, within GFF1252at 503.853 kb on + strand, within GFF1252at 503.853 kb on + strand, within GFF1252at 503.853 kb on + strand, within GFF1252at 503.853 kb on + strand, within GFF1252at 503.853 kb on + strand, within GFF1252at 503.853 kb on + strand, within GFF1252at 503.853 kb on + strand, within GFF1252at 503.853 kb on + strand, within GFF1252at 503.853 kb on + strand, within GFF1252at 503.854 kb on - strand, within GFF1252at 503.854 kb on - strand, within GFF1252at 503.854 kb on - strand, within GFF1252at 503.854 kb on - strand, within GFF1252at 503.854 kb on - strand, within GFF1252at 503.854 kb on - strand, within GFF1252at 503.873 kb on + strand, within GFF1252at 503.873 kb on + strand, within GFF1252at 503.873 kb on + strand, within GFF1252at 503.873 kb on + strand, within GFF1252at 503.874 kb on - strand, within GFF1252at 503.874 kb on - strand, within GFF1252at 503.874 kb on - strand, within GFF1252at 503.874 kb on - strand, within GFF1252at 503.892 kb on - strand, within GFF1252at 503.892 kb on - strand, within GFF1252at 503.896 kb on - strand, within GFF1252at 504.037 kb on - strand, within GFF1252at 504.074 kb on + strand, within GFF1252at 504.126 kb on + strand, within GFF1252at 504.127 kb on - strand, within GFF1252at 504.127 kb on - strand, within GFF1252at 504.162 kb on + strand, within GFF1252at 504.162 kb on + strand, within GFF1252at 504.163 kb on - strand, within GFF1252at 504.200 kb on + strand, within GFF1252at 504.280 kb on + strand, within GFF1252at 504.280 kb on + strand, within GFF1252at 504.281 kb on - strand, within GFF1252at 504.281 kb on - strand, within GFF1252at 504.288 kb on - strand, within GFF1252at 504.325 kb on - strand, within GFF1252at 504.325 kb on - strand, within GFF1252at 504.325 kb on - strand, within GFF1252at 504.325 kb on - strand, within GFF1252at 504.336 kb on + strand, within GFF1252at 504.336 kb on + strand, within GFF1252at 504.338 kb on + strand, within GFF1252at 504.338 kb on + strand, within GFF1252at 504.338 kb on + strand, within GFF1252at 504.339 kb on - strand, within GFF1252at 504.339 kb on - strand, within GFF1252at 504.339 kb on - strand, within GFF1252at 504.339 kb on - strand, within GFF1252at 504.470 kb on + strand, within GFF1252at 504.558 kb on + strand, within GFF1252at 504.558 kb on + strand, within GFF1252at 504.559 kb on - strand, within GFF1252at 504.559 kb on - strand, within GFF1252at 504.559 kb on - strand, within GFF1252at 504.559 kb on - strand, within GFF1252at 504.653 kb on + strand, within GFF1252at 504.653 kb on + strand, within GFF1252at 504.654 kb on - strand, within GFF1252at 504.654 kb on - strand, within GFF1252at 504.666 kb on - strand, within GFF1252at 504.666 kb on - strand, within GFF1252at 504.697 kb on + strand, within GFF1252at 504.697 kb on + strand, within GFF1252at 504.697 kb on + strand, within GFF1252at 504.698 kb on - strand, within GFF1252at 504.698 kb on - strand, within GFF1252at 504.700 kb on + strand, within GFF1252at 504.700 kb on + strand, within GFF1252at 504.700 kb on + strand, within GFF1252at 504.701 kb on - strand, within GFF1252at 504.701 kb on - strand, within GFF1252at 504.701 kb on - strand, within GFF1252at 504.701 kb on - strand, within GFF1252at 504.734 kb on + strand, within GFF1252at 504.735 kb on - strand, within GFF1252at 504.735 kb on - strand, within GFF1252at 504.751 kb on - strand, within GFF1252at 504.781 kb on + strand, within GFF1252at 504.818 kb on + strand, within GFF1252at 504.818 kb on + strand, within GFF1252at 504.819 kb on - strand, within GFF1252at 504.819 kb on - strand, within GFF1252at 504.819 kb on - strand, within GFF1252at 504.819 kb on - strand, within GFF1252at 505.071 kb on + strandat 505.071 kb on + strandat 505.072 kb on - strandat 505.072 kb on - strandat 505.194 kb on + strandat 505.195 kb on - strandat 505.195 kb on - strandat 505.219 kb on + strandat 505.220 kb on - strandat 505.220 kb on - strandat 505.220 kb on - strandat 505.575 kb on - strand, within GFF1253at 505.706 kb on + strand, within GFF1253at 505.706 kb on + strand, within GFF1253at 505.706 kb on + strand, within GFF1253at 505.706 kb on + strand, within GFF1253at 505.707 kb on - strand, within GFF1253at 505.707 kb on - strand, within GFF1253at 505.885 kb on + strand, within GFF1253at 505.885 kb on + strand, within GFF1253at 505.885 kb on + strand, within GFF1253at 505.918 kb on + strand, within GFF1253at 505.919 kb on - strand, within GFF1253at 505.928 kb on + strand, within GFF1253at 505.998 kb on + strand, within GFF1253at 505.998 kb on + strand, within GFF1253at 505.998 kb on + strand, within GFF1253at 505.998 kb on + strand, within GFF1253at 505.998 kb on + strand, within GFF1253at 505.998 kb on + strand, within GFF1253at 505.999 kb on - strand, within GFF1253at 505.999 kb on - strand, within GFF1253at 505.999 kb on - strand, within GFF1253at 505.999 kb on - strand, within GFF1253at 505.999 kb on - strand, within GFF1253at 505.999 kb on - strand, within GFF1253at 505.999 kb on - strand, within GFF1253at 505.999 kb on - strand, within GFF1253at 506.061 kb on + strand, within GFF1253at 506.085 kb on - strand, within GFF1253at 506.198 kb on + strand, within GFF1253at 506.208 kb on - strand, within GFF1253at 506.208 kb on - strand, within GFF1253

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and Methanol (C)
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503,435 + GFF1251 0.87 -1.7
503,565 + -1.4
503,565 + -1.4
503,565 + -0.6
503,566 - -0.8
503,566 - -0.1
503,566 - +0.9
503,567 + -0.3
503,567 + +0.5
503,567 + -0.1
503,567 + -1.4
503,567 + -1.1
503,568 - -0.7
503,568 - -1.0
503,568 - +0.2
503,568 - -2.0
503,598 + -0.4
503,599 - +0.1
503,599 - -0.7
503,606 - -0.1
503,609 + -0.4
503,609 + -0.2
503,610 - -0.1
503,643 - -0.3
503,672 + -0.4
503,673 - +0.2
503,673 - -0.8
503,673 - -0.7
503,673 - -1.3
503,673 - -0.1
503,685 + -0.1
503,685 + -0.1
503,685 + -0.2
503,686 - -0.4
503,694 + -1.5
503,694 + -0.9
503,694 + -0.9
503,694 + +0.9
503,695 - -0.9
503,695 - -0.0
503,697 + -0.3
503,697 + -0.1
503,698 - -0.7
503,703 + -0.1
503,703 + +0.6
503,704 - -0.7
503,740 - +0.3
503,740 - -1.1
503,771 - -0.3
503,771 - -0.7
503,833 - -1.4
503,838 + -0.9
503,839 - -1.6
503,843 + -1.4
503,851 + GFF1252 0.10 -0.1
503,851 + GFF1252 0.10 -2.1
503,851 + GFF1252 0.10 -0.9
503,851 + GFF1252 0.10 -0.1
503,852 - GFF1252 0.10 +0.2
503,853 + GFF1252 0.10 -0.4
503,853 + GFF1252 0.10 -0.7
503,853 + GFF1252 0.10 -1.1
503,853 + GFF1252 0.10 -0.8
503,853 + GFF1252 0.10 -0.8
503,853 + GFF1252 0.10 -0.9
503,853 + GFF1252 0.10 -0.5
503,853 + GFF1252 0.10 +0.1
503,853 + GFF1252 0.10 +0.6
503,854 - GFF1252 0.10 -0.4
503,854 - GFF1252 0.10 +1.1
503,854 - GFF1252 0.10 -0.6
503,854 - GFF1252 0.10 +0.9
503,854 - GFF1252 0.10 +0.8
503,854 - GFF1252 0.10 -0.4
503,873 + GFF1252 0.12 -0.4
503,873 + GFF1252 0.12 -0.5
503,873 + GFF1252 0.12 -0.4
503,873 + GFF1252 0.12 +0.9
503,874 - GFF1252 0.12 -0.2
503,874 - GFF1252 0.12 -0.6
503,874 - GFF1252 0.12 +0.6
503,874 - GFF1252 0.12 -0.5
503,892 - GFF1252 0.13 -1.8
503,892 - GFF1252 0.13 -0.8
503,896 - GFF1252 0.13 -1.4
504,037 - GFF1252 0.22 -1.1
504,074 + GFF1252 0.25 -1.4
504,126 + GFF1252 0.28 -0.6
504,127 - GFF1252 0.28 -0.1
504,127 - GFF1252 0.28 -0.3
504,162 + GFF1252 0.31 -0.7
504,162 + GFF1252 0.31 +0.5
504,163 - GFF1252 0.31 -0.4
504,200 + GFF1252 0.33 -1.0
504,280 + GFF1252 0.38 -1.3
504,280 + GFF1252 0.38 -0.7
504,281 - GFF1252 0.38 -0.3
504,281 - GFF1252 0.38 -0.1
504,288 - GFF1252 0.39 -0.3
504,325 - GFF1252 0.41 -0.2
504,325 - GFF1252 0.41 -0.6
504,325 - GFF1252 0.41 -1.1
504,325 - GFF1252 0.41 -1.9
504,336 + GFF1252 0.42 -0.1
504,336 + GFF1252 0.42 -2.8
504,338 + GFF1252 0.42 -0.6
504,338 + GFF1252 0.42 -1.9
504,338 + GFF1252 0.42 -0.1
504,339 - GFF1252 0.42 -0.4
504,339 - GFF1252 0.42 -1.7
504,339 - GFF1252 0.42 +0.5
504,339 - GFF1252 0.42 -0.4
504,470 + GFF1252 0.51 +0.4
504,558 + GFF1252 0.57 -0.3
504,558 + GFF1252 0.57 -0.5
504,559 - GFF1252 0.57 -0.7
504,559 - GFF1252 0.57 -1.1
504,559 - GFF1252 0.57 -1.3
504,559 - GFF1252 0.57 +0.1
504,653 + GFF1252 0.63 +0.2
504,653 + GFF1252 0.63 -0.1
504,654 - GFF1252 0.63 -0.7
504,654 - GFF1252 0.63 -1.3
504,666 - GFF1252 0.64 -0.1
504,666 - GFF1252 0.64 -0.9
504,697 + GFF1252 0.66 -0.8
504,697 + GFF1252 0.66 -0.3
504,697 + GFF1252 0.66 -0.6
504,698 - GFF1252 0.66 -0.1
504,698 - GFF1252 0.66 +0.9
504,700 + GFF1252 0.66 -0.4
504,700 + GFF1252 0.66 -0.1
504,700 + GFF1252 0.66 -0.9
504,701 - GFF1252 0.66 -0.4
504,701 - GFF1252 0.66 -1.2
504,701 - GFF1252 0.66 -0.7
504,701 - GFF1252 0.66 -0.2
504,734 + GFF1252 0.68 -0.6
504,735 - GFF1252 0.68 +0.1
504,735 - GFF1252 0.68 -1.6
504,751 - GFF1252 0.69 -1.2
504,781 + GFF1252 0.71 -2.4
504,818 + GFF1252 0.74 +1.4
504,818 + GFF1252 0.74 -1.4
504,819 - GFF1252 0.74 -0.1
504,819 - GFF1252 0.74 -0.2
504,819 - GFF1252 0.74 -0.7
504,819 - GFF1252 0.74 -0.7
505,071 + -0.5
505,071 + -0.3
505,072 - +0.0
505,072 - -0.8
505,194 + -0.6
505,195 - +0.0
505,195 - -0.3
505,219 + -0.4
505,220 - -1.4
505,220 - -1.9
505,220 - -2.1
505,575 - GFF1253 0.17 -0.8
505,706 + GFF1253 0.24 -0.2
505,706 + GFF1253 0.24 -0.6
505,706 + GFF1253 0.24 -0.5
505,706 + GFF1253 0.24 -0.1
505,707 - GFF1253 0.24 -1.2
505,707 - GFF1253 0.24 -0.3
505,885 + GFF1253 0.33 +0.9
505,885 + GFF1253 0.33 -0.3
505,885 + GFF1253 0.33 +0.2
505,918 + GFF1253 0.35 -0.1
505,919 - GFF1253 0.35 -0.4
505,928 + GFF1253 0.36 -2.4
505,998 + GFF1253 0.39 +0.5
505,998 + GFF1253 0.39 -0.9
505,998 + GFF1253 0.39 -0.5
505,998 + GFF1253 0.39 -1.2
505,998 + GFF1253 0.39 +0.3
505,998 + GFF1253 0.39 -0.9
505,999 - GFF1253 0.39 +0.3
505,999 - GFF1253 0.39 +0.9
505,999 - GFF1253 0.39 +0.9
505,999 - GFF1253 0.39 +0.3
505,999 - GFF1253 0.39 -1.0
505,999 - GFF1253 0.39 -1.4
505,999 - GFF1253 0.39 -1.7
505,999 - GFF1253 0.39 +0.0
506,061 + GFF1253 0.43 -1.1
506,085 - GFF1253 0.44 -0.3
506,198 + GFF1253 0.50 -1.4
506,208 - GFF1253 0.50 -1.1
506,208 - GFF1253 0.50 +0.5

Or see this region's nucleotide sequence