Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06882

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06881 and MPMX19_06882 are separated by 260 nucleotidesMPMX19_06882 and MPMX19_06883 overlap by 4 nucleotidesMPMX19_06883 and MPMX19_06884 are separated by 34 nucleotides MPMX19_06881: MPMX19_06881 - O-acetyl-L-homoserine sulfhydrylase, at 152,474 to 153,769 _06881 MPMX19_06882: MPMX19_06882 - hypothetical protein, at 154,030 to 155,691 _06882 MPMX19_06883: MPMX19_06883 - Choline trimethylamine-lyase activating enzyme, at 155,688 to 156,029 _06883 MPMX19_06884: MPMX19_06884 - hypothetical protein, at 156,064 to 157,110 _06884 Position (kb) 154 155 156Strain fitness (log2 ratio) -2 -1 0 1 2at 153.101 kb on + strand, within MPMX19_06881at 153.101 kb on + strand, within MPMX19_06881at 153.101 kb on + strand, within MPMX19_06881at 153.101 kb on + strand, within MPMX19_06881at 153.101 kb on + strand, within MPMX19_06881at 153.212 kb on + strand, within MPMX19_06881at 153.212 kb on + strand, within MPMX19_06881at 153.212 kb on + strand, within MPMX19_06881at 153.263 kb on + strand, within MPMX19_06881at 153.263 kb on + strand, within MPMX19_06881at 153.263 kb on + strand, within MPMX19_06881at 153.264 kb on - strand, within MPMX19_06881at 153.264 kb on - strand, within MPMX19_06881at 153.407 kb on + strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.582 kb on - strand, within MPMX19_06881at 153.582 kb on - strand, within MPMX19_06881at 153.582 kb on - strand, within MPMX19_06881at 153.582 kb on - strand, within MPMX19_06881at 153.582 kb on - strand, within MPMX19_06881at 153.582 kb on - strand, within MPMX19_06881at 153.693 kb on - strandat 153.693 kb on - strandat 153.767 kb on + strandat 153.767 kb on + strandat 153.767 kb on + strandat 153.767 kb on + strandat 153.768 kb on - strandat 153.768 kb on - strandat 153.768 kb on - strandat 153.768 kb on - strandat 153.891 kb on + strandat 153.892 kb on - strandat 153.892 kb on - strandat 154.101 kb on - strandat 154.231 kb on + strand, within MPMX19_06882at 154.231 kb on + strand, within MPMX19_06882at 154.231 kb on + strand, within MPMX19_06882at 154.231 kb on + strand, within MPMX19_06882at 154.231 kb on + strand, within MPMX19_06882at 154.232 kb on - strand, within MPMX19_06882at 154.232 kb on - strand, within MPMX19_06882at 154.232 kb on - strand, within MPMX19_06882at 154.232 kb on - strand, within MPMX19_06882at 154.232 kb on - strand, within MPMX19_06882at 154.232 kb on - strand, within MPMX19_06882at 154.232 kb on - strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.435 kb on - strand, within MPMX19_06882at 154.435 kb on - strand, within MPMX19_06882at 154.435 kb on - strand, within MPMX19_06882at 154.870 kb on + strand, within MPMX19_06882at 154.870 kb on + strand, within MPMX19_06882at 154.870 kb on + strand, within MPMX19_06882at 155.362 kb on + strand, within MPMX19_06882at 155.362 kb on + strand, within MPMX19_06882at 155.362 kb on + strand, within MPMX19_06882at 155.362 kb on + strand, within MPMX19_06882at 155.362 kb on + strand, within MPMX19_06882at 155.363 kb on - strand, within MPMX19_06882at 155.363 kb on - strand, within MPMX19_06882at 155.363 kb on - strand, within MPMX19_06882at 155.363 kb on - strand, within MPMX19_06882at 155.363 kb on - strand, within MPMX19_06882at 155.509 kb on + strand, within MPMX19_06882at 155.509 kb on + strand, within MPMX19_06882at 155.509 kb on + strand, within MPMX19_06882at 155.509 kb on + strand, within MPMX19_06882at 155.509 kb on + strand, within MPMX19_06882at 155.509 kb on + strand, within MPMX19_06882at 155.509 kb on + strand, within MPMX19_06882at 155.510 kb on - strand, within MPMX19_06882at 155.510 kb on - strand, within MPMX19_06882at 155.510 kb on - strand, within MPMX19_06882at 155.510 kb on - strand, within MPMX19_06882at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.946 kb on + strand, within MPMX19_06883at 156.422 kb on - strand, within MPMX19_06884at 156.422 kb on - strand, within MPMX19_06884at 156.422 kb on - strand, within MPMX19_06884at 156.422 kb on - strand, within MPMX19_06884at 156.422 kb on - strand, within MPMX19_06884at 156.422 kb on - strand, within MPMX19_06884at 156.431 kb on - strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.556 kb on + strand, within MPMX19_06884at 156.556 kb on + strand, within MPMX19_06884at 156.556 kb on + strand, within MPMX19_06884

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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153,101 + MPMX19_06881 0.48 +0.8
153,101 + MPMX19_06881 0.48 -0.9
153,101 + MPMX19_06881 0.48 -0.7
153,101 + MPMX19_06881 0.48 -0.0
153,101 + MPMX19_06881 0.48 -0.2
153,212 + MPMX19_06881 0.57 -0.8
153,212 + MPMX19_06881 0.57 -0.6
153,212 + MPMX19_06881 0.57 +0.5
153,263 + MPMX19_06881 0.61 -0.2
153,263 + MPMX19_06881 0.61 +1.0
153,263 + MPMX19_06881 0.61 +0.5
153,264 - MPMX19_06881 0.61 -1.7
153,264 - MPMX19_06881 0.61 -0.2
153,407 + MPMX19_06881 0.72 -0.4
153,489 - MPMX19_06881 0.78 -0.4
153,489 - MPMX19_06881 0.78 -0.8
153,489 - MPMX19_06881 0.78 +0.5
153,489 - MPMX19_06881 0.78 +0.2
153,489 - MPMX19_06881 0.78 -0.9
153,489 - MPMX19_06881 0.78 -1.1
153,489 - MPMX19_06881 0.78 -0.7
153,489 - MPMX19_06881 0.78 +0.8
153,582 - MPMX19_06881 0.85 -0.5
153,582 - MPMX19_06881 0.85 -0.3
153,582 - MPMX19_06881 0.85 -0.2
153,582 - MPMX19_06881 0.85 -1.4
153,582 - MPMX19_06881 0.85 -0.2
153,582 - MPMX19_06881 0.85 -0.2
153,693 - -0.5
153,693 - -0.4
153,767 + -1.1
153,767 + -1.5
153,767 + -0.2
153,767 + -0.1
153,768 - +0.2
153,768 - +0.1
153,768 - -1.4
153,768 - -2.5
153,891 + +0.6
153,892 - -1.5
153,892 - -1.5
154,101 - +0.6
154,231 + MPMX19_06882 0.12 -0.3
154,231 + MPMX19_06882 0.12 -0.9
154,231 + MPMX19_06882 0.12 -1.1
154,231 + MPMX19_06882 0.12 +1.1
154,231 + MPMX19_06882 0.12 -0.2
154,232 - MPMX19_06882 0.12 +1.6
154,232 - MPMX19_06882 0.12 -0.9
154,232 - MPMX19_06882 0.12 -0.4
154,232 - MPMX19_06882 0.12 -1.3
154,232 - MPMX19_06882 0.12 +0.2
154,232 - MPMX19_06882 0.12 -0.4
154,232 - MPMX19_06882 0.12 -1.7
154,434 + MPMX19_06882 0.24 +0.8
154,434 + MPMX19_06882 0.24 -1.4
154,434 + MPMX19_06882 0.24 -0.4
154,434 + MPMX19_06882 0.24 -1.3
154,434 + MPMX19_06882 0.24 -0.5
154,434 + MPMX19_06882 0.24 -1.2
154,434 + MPMX19_06882 0.24 -0.2
154,434 + MPMX19_06882 0.24 +0.6
154,434 + MPMX19_06882 0.24 -1.8
154,434 + MPMX19_06882 0.24 -0.4
154,435 - MPMX19_06882 0.24 +0.6
154,435 - MPMX19_06882 0.24 +0.3
154,435 - MPMX19_06882 0.24 -0.9
154,870 + MPMX19_06882 0.51 -0.2
154,870 + MPMX19_06882 0.51 -1.8
154,870 + MPMX19_06882 0.51 -0.7
155,362 + MPMX19_06882 0.80 +0.2
155,362 + MPMX19_06882 0.80 +1.1
155,362 + MPMX19_06882 0.80 -1.1
155,362 + MPMX19_06882 0.80 -0.8
155,362 + MPMX19_06882 0.80 +0.2
155,363 - MPMX19_06882 0.80 -0.3
155,363 - MPMX19_06882 0.80 -0.5
155,363 - MPMX19_06882 0.80 -0.4
155,363 - MPMX19_06882 0.80 +0.3
155,363 - MPMX19_06882 0.80 -0.7
155,509 + MPMX19_06882 0.89 +0.6
155,509 + MPMX19_06882 0.89 -0.2
155,509 + MPMX19_06882 0.89 -0.2
155,509 + MPMX19_06882 0.89 +0.3
155,509 + MPMX19_06882 0.89 -1.8
155,509 + MPMX19_06882 0.89 -2.1
155,509 + MPMX19_06882 0.89 +1.0
155,510 - MPMX19_06882 0.89 -0.6
155,510 - MPMX19_06882 0.89 -1.3
155,510 - MPMX19_06882 0.89 -1.2
155,510 - MPMX19_06882 0.89 -1.2
155,872 - MPMX19_06883 0.54 -0.6
155,872 - MPMX19_06883 0.54 -0.8
155,872 - MPMX19_06883 0.54 -0.3
155,872 - MPMX19_06883 0.54 -0.4
155,872 - MPMX19_06883 0.54 -2.7
155,872 - MPMX19_06883 0.54 -0.2
155,872 - MPMX19_06883 0.54 +1.8
155,872 - MPMX19_06883 0.54 +0.1
155,872 - MPMX19_06883 0.54 -0.1
155,872 - MPMX19_06883 0.54 -1.2
155,872 - MPMX19_06883 0.54 +0.3
155,872 - MPMX19_06883 0.54 -0.7
155,872 - MPMX19_06883 0.54 +0.6
155,872 - MPMX19_06883 0.54 -1.7
155,872 - MPMX19_06883 0.54 -1.4
155,946 + MPMX19_06883 0.75 -1.5
156,422 - MPMX19_06884 0.34 -1.7
156,422 - MPMX19_06884 0.34 -0.2
156,422 - MPMX19_06884 0.34 +1.4
156,422 - MPMX19_06884 0.34 +0.2
156,422 - MPMX19_06884 0.34 +0.4
156,422 - MPMX19_06884 0.34 -0.5
156,431 - MPMX19_06884 0.35 +0.4
156,541 + MPMX19_06884 0.46 -0.4
156,541 + MPMX19_06884 0.46 +0.2
156,541 + MPMX19_06884 0.46 -0.7
156,541 + MPMX19_06884 0.46 -0.6
156,541 + MPMX19_06884 0.46 +2.1
156,541 + MPMX19_06884 0.46 +1.2
156,541 + MPMX19_06884 0.46 +0.5
156,541 + MPMX19_06884 0.46 +1.2
156,541 + MPMX19_06884 0.46 -1.4
156,543 + MPMX19_06884 0.46 +0.1
156,543 + MPMX19_06884 0.46 -0.7
156,543 + MPMX19_06884 0.46 +0.3
156,543 + MPMX19_06884 0.46 -1.6
156,543 + MPMX19_06884 0.46 -0.9
156,543 + MPMX19_06884 0.46 -0.9
156,543 + MPMX19_06884 0.46 -0.1
156,543 + MPMX19_06884 0.46 -0.8
156,543 + MPMX19_06884 0.46 -0.5
156,543 + MPMX19_06884 0.46 +0.2
156,543 + MPMX19_06884 0.46 -0.8
156,543 + MPMX19_06884 0.46 -0.4
156,543 + MPMX19_06884 0.46 +0.6
156,543 + MPMX19_06884 0.46 -0.2
156,543 + MPMX19_06884 0.46 +0.5
156,543 + MPMX19_06884 0.46 +0.1
156,543 + MPMX19_06884 0.46 +0.5
156,543 + MPMX19_06884 0.46 -1.3
156,543 + MPMX19_06884 0.46 +0.5
156,543 + MPMX19_06884 0.46 +0.3
156,543 + MPMX19_06884 0.46 +0.2
156,543 + MPMX19_06884 0.46 -2.1
156,543 + MPMX19_06884 0.46 -1.3
156,543 + MPMX19_06884 0.46 -0.6
156,543 + MPMX19_06884 0.46 -0.2
156,543 + MPMX19_06884 0.46 -1.0
156,543 + MPMX19_06884 0.46 -1.7
156,543 + MPMX19_06884 0.46 -0.2
156,543 + MPMX19_06884 0.46 -0.4
156,543 + MPMX19_06884 0.46 -1.5
156,556 + MPMX19_06884 0.47 -1.4
156,556 + MPMX19_06884 0.47 +0.1
156,556 + MPMX19_06884 0.47 -1.8

Or see this region's nucleotide sequence