Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06741 and MPMX19_06742 are separated by 4 nucleotides MPMX19_06742 and MPMX19_06743 overlap by 4 nucleotides MPMX19_06743 and MPMX19_06744 are separated by 53 nucleotides MPMX19_06744 and MPMX19_06745 are separated by 83 nucleotides
MPMX19_06741: MPMX19_06741 - hypothetical protein, at 6,153 to 6,431
_06741
MPMX19_06742: MPMX19_06742 - Chemotaxis protein CheY, at 6,436 to 6,804
_06742
MPMX19_06743: MPMX19_06743 - Chemotaxis protein CheA, at 6,801 to 8,792
_06743
MPMX19_06744: MPMX19_06744 - Chemotaxis protein CheW, at 8,846 to 9,298
_06744
MPMX19_06745: MPMX19_06745 - hypothetical protein, at 9,382 to 11,610
_06745
Position (kb) 6
7
8
9 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5.944 kb on + strand at 5.944 kb on + strand at 5.945 kb on - strand at 5.949 kb on + strand at 5.950 kb on - strand at 5.950 kb on - strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.957 kb on - strand at 5.957 kb on - strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 6.266 kb on - strand, within MPMX19_06741 at 6.432 kb on + strand at 6.433 kb on - strand at 6.433 kb on - strand at 6.449 kb on + strand at 6.449 kb on + strand at 6.449 kb on + strand at 6.449 kb on + strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.452 kb on + strand at 6.452 kb on + strand at 6.452 kb on + strand at 6.452 kb on + strand at 6.609 kb on + strand, within MPMX19_06742 at 6.609 kb on + strand, within MPMX19_06742 at 7.086 kb on - strand, within MPMX19_06743 at 7.086 kb on - strand, within MPMX19_06743 at 7.086 kb on - strand, within MPMX19_06743 at 7.086 kb on - strand, within MPMX19_06743 at 8.407 kb on - strand, within MPMX19_06743 at 8.562 kb on + strand, within MPMX19_06743 at 8.562 kb on + strand, within MPMX19_06743 at 8.562 kb on + strand, within MPMX19_06743 at 8.563 kb on - strand, within MPMX19_06743 at 8.563 kb on - strand, within MPMX19_06743 at 9.188 kb on - strand, within MPMX19_06744 at 9.188 kb on - strand, within MPMX19_06744 at 9.559 kb on + strand at 9.560 kb on - strand at 9.560 kb on - strand at 9.560 kb on - strand at 9.613 kb on - strand, within MPMX19_06745 at 9.613 kb on - strand, within MPMX19_06745 at 9.613 kb on - strand, within MPMX19_06745 at 9.676 kb on + strand, within MPMX19_06745
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 5,944 + -0.7 5,944 + -1.6 5,945 - +0.6 5,949 + -0.7 5,950 - -1.6 5,950 - -1.7 5,956 + -0.7 5,956 + +0.1 5,956 + -1.1 5,956 + -2.4 5,956 + -2.4 5,956 + -0.9 5,956 + -0.1 5,956 + +0.2 5,957 - -0.4 5,957 - -0.7 5,958 + -0.5 5,958 + -0.9 5,958 + +0.6 5,958 + -1.5 5,958 + -1.7 5,958 + -0.9 5,958 + -1.0 5,958 + -1.2 5,958 + -0.2 5,958 + -1.5 5,958 + -1.1 5,958 + +1.6 5,958 + +0.0 5,958 + +0.1 5,958 + +0.9 5,958 + -0.4 5,958 + -0.4 5,958 + -0.4 5,958 + -0.7 5,959 - -0.9 5,959 - -0.0 5,959 - +0.6 5,959 - -0.5 5,959 - -0.5 5,959 - -0.6 5,959 - +1.9 5,959 - +1.0 5,959 - -0.9 5,959 - +0.6 5,959 - -1.9 5,959 - -2.0 5,959 - -0.1 5,959 - -0.4 5,959 - +0.4 5,959 - +1.1 5,959 - -1.5 5,959 - -2.0 5,959 - +1.6 6,266 - MPMX19_06741 0.41 -1.7 6,432 + +1.4 6,433 - -0.2 6,433 - -0.0 6,449 + -2.5 6,449 + -0.7 6,449 + -2.1 6,449 + -0.8 6,450 - -0.7 6,450 - -1.5 6,450 - -1.5 6,450 - -0.9 6,450 - -1.2 6,450 - +0.1 6,450 - +0.9 6,450 - +0.3 6,450 - -0.2 6,450 - +0.3 6,452 + +0.4 6,452 + -0.2 6,452 + -0.5 6,452 + -1.0 6,609 + MPMX19_06742 0.47 -1.2 6,609 + MPMX19_06742 0.47 -0.5 7,086 - MPMX19_06743 0.14 -0.9 7,086 - MPMX19_06743 0.14 -0.4 7,086 - MPMX19_06743 0.14 -0.8 7,086 - MPMX19_06743 0.14 -1.4 8,407 - MPMX19_06743 0.81 -1.1 8,562 + MPMX19_06743 0.88 -0.7 8,562 + MPMX19_06743 0.88 -0.4 8,562 + MPMX19_06743 0.88 -1.7 8,563 - MPMX19_06743 0.88 -0.7 8,563 - MPMX19_06743 0.88 -0.9 9,188 - MPMX19_06744 0.75 -0.1 9,188 - MPMX19_06744 0.75 +0.2 9,559 + -0.0 9,560 - -0.0 9,560 - +0.1 9,560 - -0.8 9,613 - MPMX19_06745 0.10 -1.7 9,613 - MPMX19_06745 0.10 -1.0 9,613 - MPMX19_06745 0.10 -1.5 9,676 + MPMX19_06745 0.13 -0.2
Or see this region's nucleotide sequence