Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06674 and MPMX19_06675 are separated by 320 nucleotides MPMX19_06675 and MPMX19_06676 are separated by 95 nucleotides
MPMX19_06674: MPMX19_06674 - hypothetical protein, at 237,845 to 238,279
_06674
MPMX19_06675: MPMX19_06675 - hypothetical protein, at 238,600 to 239,892
_06675
MPMX19_06676: MPMX19_06676 - hypothetical protein, at 239,988 to 241,664
_06676
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 237.686 kb on + strand at 237.687 kb on - strand at 237.782 kb on + strand at 237.782 kb on + strand at 237.782 kb on + strand at 238.277 kb on + strand at 238.277 kb on + strand at 238.277 kb on + strand at 238.277 kb on + strand at 238.278 kb on - strand at 238.278 kb on - strand at 238.278 kb on - strand at 238.278 kb on - strand at 238.355 kb on + strand at 238.355 kb on + strand at 238.355 kb on + strand at 238.363 kb on + strand at 238.363 kb on + strand at 238.364 kb on - strand at 238.364 kb on - strand at 238.364 kb on - strand at 238.364 kb on - strand at 238.364 kb on - strand at 238.520 kb on + strand at 238.521 kb on - strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.645 kb on - strand at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.990 kb on + strand, within MPMX19_06675 at 238.990 kb on + strand, within MPMX19_06675 at 238.990 kb on + strand, within MPMX19_06675 at 239.011 kb on + strand, within MPMX19_06675 at 239.011 kb on + strand, within MPMX19_06675 at 239.012 kb on - strand, within MPMX19_06675 at 239.012 kb on - strand, within MPMX19_06675 at 239.038 kb on + strand, within MPMX19_06675 at 239.038 kb on + strand, within MPMX19_06675 at 239.038 kb on + strand, within MPMX19_06675 at 239.038 kb on + strand, within MPMX19_06675 at 239.038 kb on + strand, within MPMX19_06675 at 239.039 kb on - strand, within MPMX19_06675 at 239.039 kb on - strand, within MPMX19_06675 at 239.039 kb on - strand, within MPMX19_06675 at 239.039 kb on - strand, within MPMX19_06675 at 239.039 kb on - strand, within MPMX19_06675 at 239.149 kb on + strand, within MPMX19_06675 at 239.150 kb on - strand, within MPMX19_06675 at 239.266 kb on + strand, within MPMX19_06675 at 239.275 kb on + strand, within MPMX19_06675 at 239.275 kb on + strand, within MPMX19_06675 at 239.276 kb on - strand, within MPMX19_06675 at 239.276 kb on - strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.738 kb on - strand, within MPMX19_06675 at 239.738 kb on - strand, within MPMX19_06675 at 239.738 kb on - strand, within MPMX19_06675 at 239.746 kb on + strand, within MPMX19_06675 at 239.746 kb on + strand, within MPMX19_06675 at 239.746 kb on + strand, within MPMX19_06675 at 239.746 kb on + strand, within MPMX19_06675 at 239.746 kb on + strand, within MPMX19_06675 at 239.747 kb on - strand, within MPMX19_06675 at 239.747 kb on - strand, within MPMX19_06675 at 239.747 kb on - strand, within MPMX19_06675 at 239.747 kb on - strand, within MPMX19_06675 at 239.788 kb on + strand at 239.989 kb on + strand at 239.989 kb on + strand at 239.989 kb on + strand at 239.989 kb on + strand at 239.989 kb on + strand at 239.989 kb on + strand at 239.989 kb on + strand at 239.989 kb on + strand at 239.990 kb on - strand at 239.990 kb on - strand at 239.990 kb on - strand at 239.990 kb on - strand at 239.990 kb on - strand at 239.990 kb on - strand at 239.990 kb on - strand at 240.013 kb on - strand at 240.134 kb on + strand at 240.134 kb on + strand at 240.134 kb on + strand at 240.134 kb on + strand at 240.134 kb on + strand at 240.135 kb on - strand at 240.135 kb on - strand at 240.135 kb on - strand at 240.319 kb on + strand, within MPMX19_06676 at 240.319 kb on + strand, within MPMX19_06676 at 240.319 kb on + strand, within MPMX19_06676 at 240.319 kb on + strand, within MPMX19_06676 at 240.320 kb on - strand, within MPMX19_06676 at 240.320 kb on - strand, within MPMX19_06676 at 240.320 kb on - strand, within MPMX19_06676 at 240.407 kb on + strand, within MPMX19_06676 at 240.407 kb on + strand, within MPMX19_06676 at 240.407 kb on + strand, within MPMX19_06676 at 240.407 kb on + strand, within MPMX19_06676 at 240.407 kb on + strand, within MPMX19_06676 at 240.408 kb on - strand, within MPMX19_06676 at 240.408 kb on - strand, within MPMX19_06676 at 240.408 kb on - strand, within MPMX19_06676 at 240.437 kb on + strand, within MPMX19_06676 at 240.437 kb on + strand, within MPMX19_06676 at 240.437 kb on + strand, within MPMX19_06676 at 240.438 kb on - strand, within MPMX19_06676 at 240.438 kb on - strand, within MPMX19_06676 at 240.438 kb on - strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.503 kb on - strand, within MPMX19_06676 at 240.503 kb on - strand, within MPMX19_06676 at 240.503 kb on - strand, within MPMX19_06676 at 240.544 kb on + strand, within MPMX19_06676 at 240.544 kb on + strand, within MPMX19_06676 at 240.544 kb on + strand, within MPMX19_06676 at 240.545 kb on - strand, within MPMX19_06676 at 240.690 kb on + strand, within MPMX19_06676 at 240.690 kb on + strand, within MPMX19_06676 at 240.690 kb on + strand, within MPMX19_06676 at 240.690 kb on + strand, within MPMX19_06676 at 240.690 kb on + strand, within MPMX19_06676 at 240.691 kb on - strand, within MPMX19_06676 at 240.799 kb on - strand, within MPMX19_06676
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 237,686 + -0.9 237,687 - -1.1 237,782 + -0.6 237,782 + -1.0 237,782 + -0.2 238,277 + -1.7 238,277 + -0.5 238,277 + -0.1 238,277 + +0.5 238,278 - -0.2 238,278 - -0.2 238,278 - -0.7 238,278 - -1.2 238,355 + -0.4 238,355 + -1.3 238,355 + -1.0 238,363 + -0.8 238,363 + +0.2 238,364 - -0.0 238,364 - +0.4 238,364 - +0.2 238,364 - +0.1 238,364 - -0.5 238,520 + -1.5 238,521 - +1.5 238,643 + -0.7 238,643 + -0.6 238,643 + -2.0 238,643 + -0.1 238,643 + +0.8 238,643 + -0.2 238,643 + -1.7 238,643 + -0.8 238,643 + -0.3 238,643 + +0.8 238,643 + -0.5 238,643 + -1.3 238,643 + -0.5 238,643 + -0.9 238,643 + -0.0 238,643 + -0.7 238,643 + -1.5 238,643 + +0.5 238,643 + -1.4 238,643 + +0.5 238,643 + +0.2 238,643 + -1.2 238,643 + -0.6 238,643 + -0.3 238,643 + +1.4 238,643 + -2.6 238,644 - -0.5 238,644 - -1.2 238,644 - +0.5 238,644 - -0.0 238,644 - -0.9 238,644 - -1.4 238,644 - -0.4 238,644 - +0.2 238,644 - +0.2 238,644 - +0.5 238,644 - +1.0 238,644 - -0.1 238,644 - -0.7 238,644 - +0.4 238,644 - -0.7 238,644 - +0.1 238,644 - +0.9 238,644 - -0.7 238,644 - -0.4 238,644 - -1.2 238,644 - -0.1 238,644 - +0.2 238,644 - -0.8 238,644 - -0.8 238,645 - -0.7 238,786 + MPMX19_06675 0.14 -1.0 238,786 + MPMX19_06675 0.14 +0.0 238,786 + MPMX19_06675 0.14 +0.7 238,786 + MPMX19_06675 0.14 +0.6 238,786 + MPMX19_06675 0.14 +0.3 238,786 + MPMX19_06675 0.14 -0.2 238,786 + MPMX19_06675 0.14 -1.0 238,787 - MPMX19_06675 0.14 -0.2 238,787 - MPMX19_06675 0.14 -0.2 238,787 - MPMX19_06675 0.14 +0.5 238,787 - MPMX19_06675 0.14 +0.2 238,787 - MPMX19_06675 0.14 +0.2 238,787 - MPMX19_06675 0.14 -0.4 238,787 - MPMX19_06675 0.14 -0.3 238,787 - MPMX19_06675 0.14 -0.3 238,787 - MPMX19_06675 0.14 +0.1 238,787 - MPMX19_06675 0.14 +0.9 238,990 + MPMX19_06675 0.30 -0.1 238,990 + MPMX19_06675 0.30 +0.5 238,990 + MPMX19_06675 0.30 -1.2 239,011 + MPMX19_06675 0.32 -0.9 239,011 + MPMX19_06675 0.32 +0.1 239,012 - MPMX19_06675 0.32 -0.2 239,012 - MPMX19_06675 0.32 +0.1 239,038 + MPMX19_06675 0.34 -0.3 239,038 + MPMX19_06675 0.34 +0.1 239,038 + MPMX19_06675 0.34 +0.4 239,038 + MPMX19_06675 0.34 +1.0 239,038 + MPMX19_06675 0.34 +0.2 239,039 - MPMX19_06675 0.34 -1.7 239,039 - MPMX19_06675 0.34 -0.4 239,039 - MPMX19_06675 0.34 +0.2 239,039 - MPMX19_06675 0.34 -2.0 239,039 - MPMX19_06675 0.34 +0.3 239,149 + MPMX19_06675 0.42 -0.2 239,150 - MPMX19_06675 0.43 +0.4 239,266 + MPMX19_06675 0.52 +2.3 239,275 + MPMX19_06675 0.52 -0.6 239,275 + MPMX19_06675 0.52 -0.2 239,276 - MPMX19_06675 0.52 +0.0 239,276 - MPMX19_06675 0.52 +0.0 239,527 + MPMX19_06675 0.72 -1.0 239,527 + MPMX19_06675 0.72 -0.6 239,527 + MPMX19_06675 0.72 -0.7 239,527 + MPMX19_06675 0.72 -0.1 239,527 + MPMX19_06675 0.72 -0.1 239,527 + MPMX19_06675 0.72 +0.3 239,527 + MPMX19_06675 0.72 -1.4 239,527 + MPMX19_06675 0.72 -0.0 239,527 + MPMX19_06675 0.72 -0.7 239,527 + MPMX19_06675 0.72 +0.2 239,527 + MPMX19_06675 0.72 -1.8 239,527 + MPMX19_06675 0.72 +1.8 239,527 + MPMX19_06675 0.72 +0.8 239,527 + MPMX19_06675 0.72 -1.1 239,527 + MPMX19_06675 0.72 -0.9 239,527 + MPMX19_06675 0.72 -0.6 239,527 + MPMX19_06675 0.72 -0.4 239,527 + MPMX19_06675 0.72 -0.4 239,527 + MPMX19_06675 0.72 -1.0 239,528 - MPMX19_06675 0.72 -0.4 239,528 - MPMX19_06675 0.72 -1.7 239,528 - MPMX19_06675 0.72 +0.0 239,528 - MPMX19_06675 0.72 +0.1 239,528 - MPMX19_06675 0.72 -0.3 239,528 - MPMX19_06675 0.72 +0.6 239,528 - MPMX19_06675 0.72 -0.1 239,528 - MPMX19_06675 0.72 -0.5 239,528 - MPMX19_06675 0.72 -0.5 239,528 - MPMX19_06675 0.72 -0.7 239,528 - MPMX19_06675 0.72 +0.6 239,528 - MPMX19_06675 0.72 -2.2 239,738 - MPMX19_06675 0.88 +0.9 239,738 - MPMX19_06675 0.88 -1.2 239,738 - MPMX19_06675 0.88 +0.3 239,746 + MPMX19_06675 0.89 -1.2 239,746 + MPMX19_06675 0.89 -0.2 239,746 + MPMX19_06675 0.89 +0.8 239,746 + MPMX19_06675 0.89 -0.1 239,746 + MPMX19_06675 0.89 +0.4 239,747 - MPMX19_06675 0.89 +0.3 239,747 - MPMX19_06675 0.89 -1.0 239,747 - MPMX19_06675 0.89 -0.9 239,747 - MPMX19_06675 0.89 +0.3 239,788 + -0.5 239,989 + +0.5 239,989 + +0.6 239,989 + -1.7 239,989 + +0.3 239,989 + -2.1 239,989 + -0.7 239,989 + -1.0 239,989 + -0.7 239,990 - +0.0 239,990 - +0.4 239,990 - -3.1 239,990 - -0.2 239,990 - +0.7 239,990 - -0.2 239,990 - +0.4 240,013 - +0.4 240,134 + -2.0 240,134 + +0.9 240,134 + -0.4 240,134 + -0.4 240,134 + +0.6 240,135 - +0.0 240,135 - -1.0 240,135 - +0.3 240,319 + MPMX19_06676 0.20 -0.1 240,319 + MPMX19_06676 0.20 +0.0 240,319 + MPMX19_06676 0.20 +0.8 240,319 + MPMX19_06676 0.20 -1.5 240,320 - MPMX19_06676 0.20 -2.2 240,320 - MPMX19_06676 0.20 +0.5 240,320 - MPMX19_06676 0.20 -0.8 240,407 + MPMX19_06676 0.25 +0.2 240,407 + MPMX19_06676 0.25 -0.5 240,407 + MPMX19_06676 0.25 -0.0 240,407 + MPMX19_06676 0.25 +0.8 240,407 + MPMX19_06676 0.25 +0.0 240,408 - MPMX19_06676 0.25 -0.1 240,408 - MPMX19_06676 0.25 -1.0 240,408 - MPMX19_06676 0.25 -0.9 240,437 + MPMX19_06676 0.27 -0.4 240,437 + MPMX19_06676 0.27 -1.5 240,437 + MPMX19_06676 0.27 +0.2 240,438 - MPMX19_06676 0.27 +0.2 240,438 - MPMX19_06676 0.27 +0.8 240,438 - MPMX19_06676 0.27 -0.2 240,502 + MPMX19_06676 0.31 -0.1 240,502 + MPMX19_06676 0.31 -0.5 240,502 + MPMX19_06676 0.31 -1.4 240,502 + MPMX19_06676 0.31 -0.1 240,502 + MPMX19_06676 0.31 +0.5 240,502 + MPMX19_06676 0.31 +0.3 240,502 + MPMX19_06676 0.31 +0.8 240,502 + MPMX19_06676 0.31 -0.1 240,503 - MPMX19_06676 0.31 -0.0 240,503 - MPMX19_06676 0.31 -0.4 240,503 - MPMX19_06676 0.31 +0.7 240,544 + MPMX19_06676 0.33 -0.8 240,544 + MPMX19_06676 0.33 +0.4 240,544 + MPMX19_06676 0.33 -1.1 240,545 - MPMX19_06676 0.33 +0.4 240,690 + MPMX19_06676 0.42 -0.5 240,690 + MPMX19_06676 0.42 -0.1 240,690 + MPMX19_06676 0.42 +0.2 240,690 + MPMX19_06676 0.42 +0.6 240,690 + MPMX19_06676 0.42 -0.2 240,691 - MPMX19_06676 0.42 +1.2 240,799 - MPMX19_06676 0.48 -1.4
Or see this region's nucleotide sequence