Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06372 and MPMX19_06373 are separated by 139 nucleotides MPMX19_06373 and MPMX19_06374 are separated by 133 nucleotides MPMX19_06374 and MPMX19_06375 are separated by 76 nucleotides
MPMX19_06372: MPMX19_06372 - hypothetical protein, at 139,944 to 141,080
_06372
MPMX19_06373: MPMX19_06373 - Lipoprotein signal peptidase, at 141,220 to 141,708
_06373
MPMX19_06374: MPMX19_06374 - HTH-type transcriptional regulator HmrR, at 141,842 to 142,264
_06374
MPMX19_06375: MPMX19_06375 - Zinc/cadmium/lead-transporting P-type ATPase, at 142,341 to 144,602
_06375
Position (kb) 141
142
143 Strain fitness (log2 ratio) -2
-1
0
1 at 140.899 kb on + strand, within MPMX19_06372 at 140.899 kb on + strand, within MPMX19_06372 at 141.138 kb on + strand at 141.139 kb on - strand at 141.149 kb on + strand at 141.149 kb on + strand at 141.149 kb on + strand at 141.149 kb on + strand at 141.149 kb on + strand at 141.150 kb on - strand at 141.150 kb on - strand at 141.150 kb on - strand at 141.150 kb on - strand at 141.150 kb on - strand at 141.606 kb on + strand, within MPMX19_06373 at 141.606 kb on + strand, within MPMX19_06373 at 141.606 kb on + strand, within MPMX19_06373 at 141.607 kb on - strand, within MPMX19_06373 at 141.607 kb on - strand, within MPMX19_06373 at 141.607 kb on - strand, within MPMX19_06373 at 141.664 kb on - strand at 141.664 kb on - strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.777 kb on + strand at 141.777 kb on + strand at 141.778 kb on - strand at 141.782 kb on + strand at 141.782 kb on + strand at 141.782 kb on + strand at 141.783 kb on - strand at 141.783 kb on - strand at 141.783 kb on - strand at 141.783 kb on - strand at 141.830 kb on + strand at 141.830 kb on + strand at 141.830 kb on + strand at 141.831 kb on - strand at 141.831 kb on - strand at 141.831 kb on - strand at 141.831 kb on - strand at 142.140 kb on + strand, within MPMX19_06374 at 142.140 kb on + strand, within MPMX19_06374 at 142.140 kb on + strand, within MPMX19_06374 at 142.140 kb on + strand, within MPMX19_06374 at 142.141 kb on - strand, within MPMX19_06374 at 142.141 kb on - strand, within MPMX19_06374 at 142.141 kb on - strand, within MPMX19_06374 at 142.141 kb on - strand, within MPMX19_06374 at 142.141 kb on - strand, within MPMX19_06374 at 142.141 kb on - strand, within MPMX19_06374 at 142.141 kb on - strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.198 kb on - strand, within MPMX19_06374 at 142.198 kb on - strand, within MPMX19_06374 at 142.198 kb on - strand, within MPMX19_06374 at 142.198 kb on - strand, within MPMX19_06374 at 142.198 kb on - strand, within MPMX19_06374 at 142.198 kb on - strand, within MPMX19_06374 at 142.200 kb on + strand, within MPMX19_06374 at 142.305 kb on + strand at 142.307 kb on - strand at 142.341 kb on - strand at 142.341 kb on - strand at 142.623 kb on - strand, within MPMX19_06375 at 142.623 kb on - strand, within MPMX19_06375 at 142.644 kb on + strand, within MPMX19_06375 at 142.645 kb on - strand, within MPMX19_06375 at 142.809 kb on + strand, within MPMX19_06375 at 142.809 kb on + strand, within MPMX19_06375 at 142.809 kb on + strand, within MPMX19_06375 at 142.809 kb on + strand, within MPMX19_06375 at 142.809 kb on + strand, within MPMX19_06375 at 142.810 kb on - strand, within MPMX19_06375 at 142.810 kb on - strand, within MPMX19_06375 at 142.810 kb on - strand, within MPMX19_06375 at 142.810 kb on - strand, within MPMX19_06375 at 142.810 kb on - strand, within MPMX19_06375
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 140,899 + MPMX19_06372 0.84 +0.3 140,899 + MPMX19_06372 0.84 -1.1 141,138 + +0.2 141,139 - -1.1 141,149 + -2.1 141,149 + -1.6 141,149 + -1.2 141,149 + +0.2 141,149 + -0.6 141,150 - +0.7 141,150 - -0.4 141,150 - +0.8 141,150 - -0.2 141,150 - -0.4 141,606 + MPMX19_06373 0.79 -1.0 141,606 + MPMX19_06373 0.79 -1.2 141,606 + MPMX19_06373 0.79 -0.6 141,607 - MPMX19_06373 0.79 -0.3 141,607 - MPMX19_06373 0.79 +0.4 141,607 - MPMX19_06373 0.79 -0.3 141,664 - +0.7 141,664 - +0.1 141,677 + -0.3 141,677 + -0.2 141,677 + +0.3 141,677 + -0.6 141,677 + -1.4 141,677 + -0.6 141,677 + -0.5 141,677 + -1.4 141,677 + -1.0 141,677 + -1.8 141,677 + -0.7 141,677 + +0.9 141,677 + +0.7 141,677 + +0.0 141,678 - -0.3 141,678 - +0.2 141,678 - -2.0 141,678 - -1.1 141,678 - -1.4 141,678 - +0.7 141,678 - +1.0 141,678 - -0.1 141,678 - +0.2 141,777 + -0.7 141,777 + -0.2 141,778 - +0.1 141,782 + -0.6 141,782 + +0.7 141,782 + +0.5 141,783 - +0.1 141,783 - -0.3 141,783 - -1.5 141,783 - -0.2 141,830 + -0.6 141,830 + +0.5 141,830 + -0.1 141,831 - +1.7 141,831 - -0.4 141,831 - -1.6 141,831 - -0.2 142,140 + MPMX19_06374 0.70 -0.3 142,140 + MPMX19_06374 0.70 -0.2 142,140 + MPMX19_06374 0.70 -0.0 142,140 + MPMX19_06374 0.70 +0.5 142,141 - MPMX19_06374 0.71 -1.3 142,141 - MPMX19_06374 0.71 +1.7 142,141 - MPMX19_06374 0.71 +1.4 142,141 - MPMX19_06374 0.71 +0.1 142,141 - MPMX19_06374 0.71 -1.1 142,141 - MPMX19_06374 0.71 +0.2 142,141 - MPMX19_06374 0.71 +0.8 142,197 + MPMX19_06374 0.84 -0.5 142,197 + MPMX19_06374 0.84 +0.1 142,197 + MPMX19_06374 0.84 +0.9 142,197 + MPMX19_06374 0.84 +0.9 142,197 + MPMX19_06374 0.84 +0.0 142,197 + MPMX19_06374 0.84 -0.5 142,197 + MPMX19_06374 0.84 +1.3 142,197 + MPMX19_06374 0.84 -0.8 142,198 - MPMX19_06374 0.84 -0.4 142,198 - MPMX19_06374 0.84 -0.3 142,198 - MPMX19_06374 0.84 +1.2 142,198 - MPMX19_06374 0.84 -1.1 142,198 - MPMX19_06374 0.84 +0.7 142,198 - MPMX19_06374 0.84 -0.5 142,200 + MPMX19_06374 0.85 -2.1 142,305 + -1.3 142,307 - -0.6 142,341 - -1.6 142,341 - +0.5 142,623 - MPMX19_06375 0.12 -1.3 142,623 - MPMX19_06375 0.12 +0.2 142,644 + MPMX19_06375 0.13 -1.0 142,645 - MPMX19_06375 0.13 -0.9 142,809 + MPMX19_06375 0.21 +1.7 142,809 + MPMX19_06375 0.21 +0.1 142,809 + MPMX19_06375 0.21 +0.2 142,809 + MPMX19_06375 0.21 -0.9 142,809 + MPMX19_06375 0.21 -0.7 142,810 - MPMX19_06375 0.21 +0.9 142,810 - MPMX19_06375 0.21 -0.9 142,810 - MPMX19_06375 0.21 -0.3 142,810 - MPMX19_06375 0.21 -1.6 142,810 - MPMX19_06375 0.21 -1.1
Or see this region's nucleotide sequence