Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05971 and MPMX19_05972 are separated by 13 nucleotides MPMX19_05972 and MPMX19_05973 are separated by 145 nucleotides MPMX19_05973 and MPMX19_05974 are separated by 283 nucleotides
MPMX19_05971: MPMX19_05971 - Diacetylchitobiose uptake system permease protein NgcG, at 122,614 to 123,483
_05971
MPMX19_05972: MPMX19_05972 - hypothetical protein, at 123,497 to 123,775
_05972
MPMX19_05973: MPMX19_05973 - hypothetical protein, at 123,921 to 125,696
_05973
MPMX19_05974: MPMX19_05974 - Glycerol kinase, at 125,980 to 127,473
_05974
Position (kb) 123
124
125
126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 122.938 kb on + strand, within MPMX19_05971 at 122.938 kb on + strand, within MPMX19_05971 at 122.938 kb on + strand, within MPMX19_05971 at 122.938 kb on + strand, within MPMX19_05971 at 122.938 kb on + strand, within MPMX19_05971 at 122.939 kb on - strand, within MPMX19_05971 at 122.939 kb on - strand, within MPMX19_05971 at 123.046 kb on + strand, within MPMX19_05971 at 123.046 kb on + strand, within MPMX19_05971 at 123.046 kb on + strand, within MPMX19_05971 at 123.047 kb on - strand, within MPMX19_05971 at 123.047 kb on - strand, within MPMX19_05971 at 123.047 kb on - strand, within MPMX19_05971 at 123.047 kb on - strand, within MPMX19_05971 at 123.047 kb on - strand, within MPMX19_05971 at 123.178 kb on + strand, within MPMX19_05971 at 123.178 kb on + strand, within MPMX19_05971 at 123.178 kb on + strand, within MPMX19_05971 at 123.178 kb on + strand, within MPMX19_05971 at 123.178 kb on + strand, within MPMX19_05971 at 123.178 kb on + strand, within MPMX19_05971 at 123.178 kb on + strand, within MPMX19_05971 at 123.178 kb on + strand, within MPMX19_05971 at 123.178 kb on + strand, within MPMX19_05971 at 123.179 kb on - strand, within MPMX19_05971 at 123.179 kb on - strand, within MPMX19_05971 at 123.179 kb on - strand, within MPMX19_05971 at 123.179 kb on - strand, within MPMX19_05971 at 123.179 kb on - strand, within MPMX19_05971 at 123.179 kb on - strand, within MPMX19_05971 at 123.179 kb on - strand, within MPMX19_05971 at 123.179 kb on - strand, within MPMX19_05971 at 123.179 kb on - strand, within MPMX19_05971 at 123.190 kb on + strand, within MPMX19_05971 at 123.191 kb on - strand, within MPMX19_05971 at 123.448 kb on + strand at 123.448 kb on + strand at 123.448 kb on + strand at 123.448 kb on + strand at 123.448 kb on + strand at 123.448 kb on + strand at 123.448 kb on + strand at 123.448 kb on + strand at 123.448 kb on + strand at 123.448 kb on + strand at 123.448 kb on + strand at 123.449 kb on - strand at 123.449 kb on - strand at 123.449 kb on - strand at 123.449 kb on - strand at 123.449 kb on - strand at 123.449 kb on - strand at 123.449 kb on - strand at 123.449 kb on - strand at 123.449 kb on - strand at 123.449 kb on - strand at 123.449 kb on - strand at 123.449 kb on - strand at 123.449 kb on - strand at 123.449 kb on - strand at 123.502 kb on + strand at 123.503 kb on - strand at 123.867 kb on + strand at 123.867 kb on + strand at 123.867 kb on + strand at 123.867 kb on + strand at 123.867 kb on + strand at 123.868 kb on - strand at 123.868 kb on - strand at 123.868 kb on - strand at 123.868 kb on - strand at 123.868 kb on - strand at 123.868 kb on - strand at 123.876 kb on + strand at 123.876 kb on + strand at 123.876 kb on + strand at 123.877 kb on - strand at 123.877 kb on - strand at 124.152 kb on + strand, within MPMX19_05973 at 124.152 kb on + strand, within MPMX19_05973 at 124.152 kb on + strand, within MPMX19_05973 at 124.152 kb on + strand, within MPMX19_05973 at 124.152 kb on + strand, within MPMX19_05973 at 124.152 kb on + strand, within MPMX19_05973 at 124.152 kb on + strand, within MPMX19_05973 at 124.152 kb on + strand, within MPMX19_05973 at 124.153 kb on - strand, within MPMX19_05973 at 124.153 kb on - strand, within MPMX19_05973 at 124.153 kb on - strand, within MPMX19_05973 at 124.153 kb on - strand, within MPMX19_05973 at 124.153 kb on - strand, within MPMX19_05973 at 124.329 kb on + strand, within MPMX19_05973 at 124.329 kb on + strand, within MPMX19_05973 at 124.329 kb on + strand, within MPMX19_05973 at 124.330 kb on - strand, within MPMX19_05973 at 124.330 kb on - strand, within MPMX19_05973 at 124.330 kb on - strand, within MPMX19_05973 at 124.330 kb on - strand, within MPMX19_05973 at 124.330 kb on - strand, within MPMX19_05973 at 124.330 kb on - strand, within MPMX19_05973 at 124.330 kb on - strand, within MPMX19_05973 at 124.338 kb on + strand, within MPMX19_05973 at 124.338 kb on + strand, within MPMX19_05973 at 124.338 kb on + strand, within MPMX19_05973 at 124.339 kb on - strand, within MPMX19_05973 at 124.339 kb on - strand, within MPMX19_05973 at 124.339 kb on - strand, within MPMX19_05973 at 124.339 kb on - strand, within MPMX19_05973 at 124.339 kb on - strand, within MPMX19_05973 at 124.339 kb on - strand, within MPMX19_05973 at 124.339 kb on - strand, within MPMX19_05973 at 124.339 kb on - strand, within MPMX19_05973 at 124.339 kb on - strand, within MPMX19_05973 at 124.500 kb on + strand, within MPMX19_05973 at 124.500 kb on + strand, within MPMX19_05973 at 124.500 kb on + strand, within MPMX19_05973 at 124.501 kb on - strand, within MPMX19_05973 at 124.501 kb on - strand, within MPMX19_05973 at 124.501 kb on - strand, within MPMX19_05973 at 124.501 kb on - strand, within MPMX19_05973 at 124.501 kb on - strand, within MPMX19_05973 at 124.533 kb on + strand, within MPMX19_05973 at 124.533 kb on + strand, within MPMX19_05973 at 124.534 kb on - strand, within MPMX19_05973 at 124.593 kb on + strand, within MPMX19_05973 at 124.593 kb on + strand, within MPMX19_05973 at 124.593 kb on + strand, within MPMX19_05973 at 124.593 kb on + strand, within MPMX19_05973 at 124.593 kb on + strand, within MPMX19_05973 at 124.593 kb on + strand, within MPMX19_05973 at 124.593 kb on + strand, within MPMX19_05973 at 124.593 kb on + strand, within MPMX19_05973 at 124.593 kb on + strand, within MPMX19_05973 at 124.594 kb on - strand, within MPMX19_05973 at 124.594 kb on - strand, within MPMX19_05973 at 124.594 kb on - strand, within MPMX19_05973 at 124.594 kb on - strand, within MPMX19_05973 at 124.594 kb on - strand, within MPMX19_05973 at 124.594 kb on - strand, within MPMX19_05973 at 124.600 kb on - strand, within MPMX19_05973 at 124.632 kb on + strand, within MPMX19_05973 at 124.632 kb on + strand, within MPMX19_05973 at 124.633 kb on - strand, within MPMX19_05973 at 124.707 kb on + strand, within MPMX19_05973 at 124.707 kb on + strand, within MPMX19_05973 at 124.707 kb on + strand, within MPMX19_05973 at 124.893 kb on + strand, within MPMX19_05973 at 124.893 kb on + strand, within MPMX19_05973 at 124.894 kb on - strand, within MPMX19_05973 at 124.894 kb on - strand, within MPMX19_05973 at 124.894 kb on - strand, within MPMX19_05973 at 124.894 kb on - strand, within MPMX19_05973 at 124.908 kb on + strand, within MPMX19_05973 at 124.908 kb on + strand, within MPMX19_05973 at 124.908 kb on + strand, within MPMX19_05973 at 124.908 kb on + strand, within MPMX19_05973 at 124.908 kb on + strand, within MPMX19_05973 at 124.908 kb on + strand, within MPMX19_05973 at 124.908 kb on + strand, within MPMX19_05973 at 124.908 kb on + strand, within MPMX19_05973 at 124.908 kb on + strand, within MPMX19_05973 at 124.908 kb on + strand, within MPMX19_05973 at 124.909 kb on - strand, within MPMX19_05973 at 124.909 kb on - strand, within MPMX19_05973 at 124.909 kb on - strand, within MPMX19_05973 at 124.909 kb on - strand, within MPMX19_05973 at 124.909 kb on - strand, within MPMX19_05973 at 124.909 kb on - strand, within MPMX19_05973 at 124.909 kb on - strand, within MPMX19_05973 at 124.909 kb on - strand, within MPMX19_05973 at 124.909 kb on - strand, within MPMX19_05973 at 124.909 kb on - strand, within MPMX19_05973 at 124.929 kb on + strand, within MPMX19_05973 at 124.929 kb on + strand, within MPMX19_05973 at 124.929 kb on + strand, within MPMX19_05973 at 124.929 kb on + strand, within MPMX19_05973 at 124.930 kb on - strand, within MPMX19_05973 at 124.930 kb on - strand, within MPMX19_05973 at 124.930 kb on - strand, within MPMX19_05973 at 124.930 kb on - strand, within MPMX19_05973 at 124.930 kb on - strand, within MPMX19_05973 at 124.930 kb on - strand, within MPMX19_05973 at 124.930 kb on - strand, within MPMX19_05973 at 124.930 kb on - strand, within MPMX19_05973 at 125.016 kb on + strand, within MPMX19_05973 at 125.016 kb on + strand, within MPMX19_05973 at 125.016 kb on + strand, within MPMX19_05973 at 125.016 kb on + strand, within MPMX19_05973 at 125.016 kb on + strand, within MPMX19_05973 at 125.017 kb on - strand, within MPMX19_05973 at 125.017 kb on - strand, within MPMX19_05973 at 125.116 kb on - strand, within MPMX19_05973 at 125.211 kb on + strand, within MPMX19_05973 at 125.211 kb on + strand, within MPMX19_05973 at 125.211 kb on + strand, within MPMX19_05973 at 125.212 kb on - strand, within MPMX19_05973 at 125.212 kb on - strand, within MPMX19_05973 at 125.346 kb on + strand, within MPMX19_05973 at 125.346 kb on + strand, within MPMX19_05973 at 125.347 kb on - strand, within MPMX19_05973 at 125.400 kb on + strand, within MPMX19_05973 at 125.652 kb on + strand at 125.653 kb on - strand at 125.653 kb on - strand at 125.653 kb on - strand at 125.694 kb on + strand at 125.695 kb on - strand at 125.750 kb on + strand at 125.751 kb on - strand at 125.787 kb on + strand at 125.788 kb on - strand at 126.385 kb on + strand, within MPMX19_05974 at 126.385 kb on + strand, within MPMX19_05974 at 126.385 kb on + strand, within MPMX19_05974 at 126.385 kb on + strand, within MPMX19_05974 at 126.386 kb on - strand, within MPMX19_05974 at 126.386 kb on - strand, within MPMX19_05974 at 126.493 kb on + strand, within MPMX19_05974 at 126.493 kb on + strand, within MPMX19_05974 at 126.493 kb on + strand, within MPMX19_05974 at 126.493 kb on + strand, within MPMX19_05974 at 126.493 kb on + strand, within MPMX19_05974 at 126.493 kb on + strand, within MPMX19_05974 at 126.493 kb on + strand, within MPMX19_05974 at 126.493 kb on + strand, within MPMX19_05974 at 126.493 kb on + strand, within MPMX19_05974 at 126.493 kb on + strand, within MPMX19_05974 at 126.494 kb on - strand, within MPMX19_05974 at 126.494 kb on - strand, within MPMX19_05974 at 126.494 kb on - strand, within MPMX19_05974 at 126.494 kb on - strand, within MPMX19_05974 at 126.494 kb on - strand, within MPMX19_05974 at 126.494 kb on - strand, within MPMX19_05974 at 126.494 kb on - strand, within MPMX19_05974 at 126.494 kb on - strand, within MPMX19_05974 at 126.494 kb on - strand, within MPMX19_05974 at 126.494 kb on - strand, within MPMX19_05974
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 122,938 + MPMX19_05971 0.37 +0.7 122,938 + MPMX19_05971 0.37 -1.0 122,938 + MPMX19_05971 0.37 -0.7 122,938 + MPMX19_05971 0.37 -1.8 122,938 + MPMX19_05971 0.37 -0.5 122,939 - MPMX19_05971 0.37 -0.2 122,939 - MPMX19_05971 0.37 -0.1 123,046 + MPMX19_05971 0.50 -1.0 123,046 + MPMX19_05971 0.50 -0.2 123,046 + MPMX19_05971 0.50 +0.4 123,047 - MPMX19_05971 0.50 -1.3 123,047 - MPMX19_05971 0.50 +1.4 123,047 - MPMX19_05971 0.50 +0.5 123,047 - MPMX19_05971 0.50 -1.0 123,047 - MPMX19_05971 0.50 -0.4 123,178 + MPMX19_05971 0.65 +0.3 123,178 + MPMX19_05971 0.65 -0.5 123,178 + MPMX19_05971 0.65 +0.1 123,178 + MPMX19_05971 0.65 -0.3 123,178 + MPMX19_05971 0.65 -0.1 123,178 + MPMX19_05971 0.65 -1.3 123,178 + MPMX19_05971 0.65 -1.6 123,178 + MPMX19_05971 0.65 -0.3 123,178 + MPMX19_05971 0.65 -1.9 123,179 - MPMX19_05971 0.65 -0.1 123,179 - MPMX19_05971 0.65 +1.7 123,179 - MPMX19_05971 0.65 -1.1 123,179 - MPMX19_05971 0.65 +0.2 123,179 - MPMX19_05971 0.65 -1.5 123,179 - MPMX19_05971 0.65 -1.8 123,179 - MPMX19_05971 0.65 -0.6 123,179 - MPMX19_05971 0.65 -1.1 123,179 - MPMX19_05971 0.65 -1.1 123,190 + MPMX19_05971 0.66 +0.2 123,191 - MPMX19_05971 0.66 -1.5 123,448 + -0.8 123,448 + +0.0 123,448 + +1.0 123,448 + +0.7 123,448 + -0.7 123,448 + +0.9 123,448 + +1.1 123,448 + -1.0 123,448 + -1.5 123,448 + +0.9 123,448 + -0.8 123,449 - +0.2 123,449 - -1.5 123,449 - +0.3 123,449 - -1.5 123,449 - +0.2 123,449 - -0.3 123,449 - -0.7 123,449 - +0.7 123,449 - +1.8 123,449 - -0.4 123,449 - +0.7 123,449 - -0.1 123,449 - -1.1 123,449 - +0.3 123,502 + -0.8 123,503 - -0.9 123,867 + -0.9 123,867 + +0.7 123,867 + +0.2 123,867 + +1.2 123,867 + +0.1 123,868 - -1.7 123,868 - -0.3 123,868 - -1.3 123,868 - -0.9 123,868 - +1.0 123,868 - -0.9 123,876 + -0.2 123,876 + -1.1 123,876 + +0.5 123,877 - +1.1 123,877 - +1.0 124,152 + MPMX19_05973 0.13 +1.4 124,152 + MPMX19_05973 0.13 +0.7 124,152 + MPMX19_05973 0.13 -0.5 124,152 + MPMX19_05973 0.13 -0.5 124,152 + MPMX19_05973 0.13 -1.3 124,152 + MPMX19_05973 0.13 -2.1 124,152 + MPMX19_05973 0.13 -0.5 124,152 + MPMX19_05973 0.13 -1.9 124,153 - MPMX19_05973 0.13 -0.9 124,153 - MPMX19_05973 0.13 -0.1 124,153 - MPMX19_05973 0.13 -1.6 124,153 - MPMX19_05973 0.13 +0.3 124,153 - MPMX19_05973 0.13 -0.8 124,329 + MPMX19_05973 0.23 +0.2 124,329 + MPMX19_05973 0.23 -0.1 124,329 + MPMX19_05973 0.23 +0.2 124,330 - MPMX19_05973 0.23 -1.9 124,330 - MPMX19_05973 0.23 -0.7 124,330 - MPMX19_05973 0.23 -1.5 124,330 - MPMX19_05973 0.23 +0.4 124,330 - MPMX19_05973 0.23 -1.5 124,330 - MPMX19_05973 0.23 +0.1 124,330 - MPMX19_05973 0.23 -0.1 124,338 + MPMX19_05973 0.23 -1.6 124,338 + MPMX19_05973 0.23 +0.3 124,338 + MPMX19_05973 0.23 -0.5 124,339 - MPMX19_05973 0.24 +0.3 124,339 - MPMX19_05973 0.24 -0.6 124,339 - MPMX19_05973 0.24 -1.1 124,339 - MPMX19_05973 0.24 -1.1 124,339 - MPMX19_05973 0.24 -0.1 124,339 - MPMX19_05973 0.24 -0.6 124,339 - MPMX19_05973 0.24 -1.3 124,339 - MPMX19_05973 0.24 -0.4 124,339 - MPMX19_05973 0.24 -1.1 124,500 + MPMX19_05973 0.33 -1.9 124,500 + MPMX19_05973 0.33 -0.8 124,500 + MPMX19_05973 0.33 -1.3 124,501 - MPMX19_05973 0.33 -2.1 124,501 - MPMX19_05973 0.33 +0.6 124,501 - MPMX19_05973 0.33 +0.0 124,501 - MPMX19_05973 0.33 -0.8 124,501 - MPMX19_05973 0.33 -1.0 124,533 + MPMX19_05973 0.34 +0.3 124,533 + MPMX19_05973 0.34 -0.1 124,534 - MPMX19_05973 0.35 -0.5 124,593 + MPMX19_05973 0.38 +0.3 124,593 + MPMX19_05973 0.38 -1.1 124,593 + MPMX19_05973 0.38 -0.3 124,593 + MPMX19_05973 0.38 -1.1 124,593 + MPMX19_05973 0.38 -0.9 124,593 + MPMX19_05973 0.38 +0.2 124,593 + MPMX19_05973 0.38 -1.6 124,593 + MPMX19_05973 0.38 -0.5 124,593 + MPMX19_05973 0.38 -2.1 124,594 - MPMX19_05973 0.38 +0.1 124,594 - MPMX19_05973 0.38 -0.9 124,594 - MPMX19_05973 0.38 -1.2 124,594 - MPMX19_05973 0.38 -2.3 124,594 - MPMX19_05973 0.38 -0.8 124,594 - MPMX19_05973 0.38 -0.4 124,600 - MPMX19_05973 0.38 -0.8 124,632 + MPMX19_05973 0.40 -0.5 124,632 + MPMX19_05973 0.40 -0.8 124,633 - MPMX19_05973 0.40 -0.5 124,707 + MPMX19_05973 0.44 -0.1 124,707 + MPMX19_05973 0.44 -0.4 124,707 + MPMX19_05973 0.44 +1.7 124,893 + MPMX19_05973 0.55 -1.1 124,893 + MPMX19_05973 0.55 +0.2 124,894 - MPMX19_05973 0.55 -0.9 124,894 - MPMX19_05973 0.55 -1.3 124,894 - MPMX19_05973 0.55 +0.2 124,894 - MPMX19_05973 0.55 +0.1 124,908 + MPMX19_05973 0.56 -0.1 124,908 + MPMX19_05973 0.56 +1.2 124,908 + MPMX19_05973 0.56 -1.1 124,908 + MPMX19_05973 0.56 +0.5 124,908 + MPMX19_05973 0.56 -0.0 124,908 + MPMX19_05973 0.56 -0.7 124,908 + MPMX19_05973 0.56 +0.2 124,908 + MPMX19_05973 0.56 -0.6 124,908 + MPMX19_05973 0.56 +0.0 124,908 + MPMX19_05973 0.56 -1.7 124,909 - MPMX19_05973 0.56 -0.3 124,909 - MPMX19_05973 0.56 +0.5 124,909 - MPMX19_05973 0.56 -0.5 124,909 - MPMX19_05973 0.56 -0.8 124,909 - MPMX19_05973 0.56 -1.5 124,909 - MPMX19_05973 0.56 +0.5 124,909 - MPMX19_05973 0.56 -0.2 124,909 - MPMX19_05973 0.56 -0.6 124,909 - MPMX19_05973 0.56 -1.1 124,909 - MPMX19_05973 0.56 -0.3 124,929 + MPMX19_05973 0.57 +1.2 124,929 + MPMX19_05973 0.57 -2.2 124,929 + MPMX19_05973 0.57 +0.1 124,929 + MPMX19_05973 0.57 -0.3 124,930 - MPMX19_05973 0.57 -1.1 124,930 - MPMX19_05973 0.57 +1.1 124,930 - MPMX19_05973 0.57 -1.3 124,930 - MPMX19_05973 0.57 -1.3 124,930 - MPMX19_05973 0.57 +0.5 124,930 - MPMX19_05973 0.57 -1.1 124,930 - MPMX19_05973 0.57 -1.8 124,930 - MPMX19_05973 0.57 -1.6 125,016 + MPMX19_05973 0.62 +0.2 125,016 + MPMX19_05973 0.62 +1.1 125,016 + MPMX19_05973 0.62 +0.3 125,016 + MPMX19_05973 0.62 -0.9 125,016 + MPMX19_05973 0.62 -0.3 125,017 - MPMX19_05973 0.62 -0.3 125,017 - MPMX19_05973 0.62 -0.1 125,116 - MPMX19_05973 0.67 -0.9 125,211 + MPMX19_05973 0.73 -1.7 125,211 + MPMX19_05973 0.73 -2.9 125,211 + MPMX19_05973 0.73 -0.4 125,212 - MPMX19_05973 0.73 -1.2 125,212 - MPMX19_05973 0.73 +0.3 125,346 + MPMX19_05973 0.80 -0.1 125,346 + MPMX19_05973 0.80 -0.9 125,347 - MPMX19_05973 0.80 -0.5 125,400 + MPMX19_05973 0.83 -0.3 125,652 + -0.1 125,653 - -0.4 125,653 - -0.4 125,653 - -1.0 125,694 + +0.4 125,695 - -0.6 125,750 + -0.8 125,751 - +1.7 125,787 + +0.9 125,788 - +0.2 126,385 + MPMX19_05974 0.27 -0.8 126,385 + MPMX19_05974 0.27 -1.1 126,385 + MPMX19_05974 0.27 -0.3 126,385 + MPMX19_05974 0.27 +0.3 126,386 - MPMX19_05974 0.27 -2.1 126,386 - MPMX19_05974 0.27 -0.6 126,493 + MPMX19_05974 0.34 -0.9 126,493 + MPMX19_05974 0.34 -1.5 126,493 + MPMX19_05974 0.34 +0.7 126,493 + MPMX19_05974 0.34 +0.1 126,493 + MPMX19_05974 0.34 -0.9 126,493 + MPMX19_05974 0.34 +0.5 126,493 + MPMX19_05974 0.34 -0.8 126,493 + MPMX19_05974 0.34 -0.2 126,493 + MPMX19_05974 0.34 +0.3 126,493 + MPMX19_05974 0.34 +0.2 126,494 - MPMX19_05974 0.34 -0.1 126,494 - MPMX19_05974 0.34 -2.3 126,494 - MPMX19_05974 0.34 -0.1 126,494 - MPMX19_05974 0.34 -0.7 126,494 - MPMX19_05974 0.34 -0.5 126,494 - MPMX19_05974 0.34 -0.5 126,494 - MPMX19_05974 0.34 -1.5 126,494 - MPMX19_05974 0.34 -0.1 126,494 - MPMX19_05974 0.34 +0.1 126,494 - MPMX19_05974 0.34 -0.3
Or see this region's nucleotide sequence