Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05687

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05685 and MPMX19_05686 are separated by 63 nucleotidesMPMX19_05686 and MPMX19_05687 are separated by 90 nucleotidesMPMX19_05687 and MPMX19_05688 overlap by 4 nucleotides MPMX19_05685: MPMX19_05685 - Protein-glutamate methylesterase/protein-glutamine glutaminase 2, at 401,128 to 402,294 _05685 MPMX19_05686: MPMX19_05686 - Chemotaxis protein CheY, at 402,358 to 402,723 _05686 MPMX19_05687: MPMX19_05687 - Chemotaxis protein CheW, at 402,814 to 403,314 _05687 MPMX19_05688: MPMX19_05688 - Sensor histidine kinase RcsC, at 403,311 to 406,088 _05688 Position (kb) 402 403 404Strain fitness (log2 ratio) -3 -2 -1 0 1at 401.930 kb on + strand, within MPMX19_05685at 401.930 kb on + strand, within MPMX19_05685at 401.930 kb on + strand, within MPMX19_05685at 401.931 kb on - strand, within MPMX19_05685at 401.931 kb on - strand, within MPMX19_05685at 401.931 kb on - strand, within MPMX19_05685at 401.931 kb on - strand, within MPMX19_05685at 401.931 kb on - strand, within MPMX19_05685at 401.931 kb on - strand, within MPMX19_05685at 402.294 kb on + strandat 402.294 kb on + strandat 402.294 kb on + strandat 402.294 kb on + strandat 402.294 kb on + strandat 402.294 kb on + strandat 402.295 kb on - strandat 402.295 kb on - strandat 402.295 kb on - strandat 402.422 kb on + strand, within MPMX19_05686at 402.422 kb on + strand, within MPMX19_05686at 402.422 kb on + strand, within MPMX19_05686at 402.422 kb on + strand, within MPMX19_05686at 402.422 kb on + strand, within MPMX19_05686at 402.422 kb on + strand, within MPMX19_05686at 402.423 kb on - strand, within MPMX19_05686at 402.423 kb on - strand, within MPMX19_05686at 402.423 kb on - strand, within MPMX19_05686at 402.423 kb on - strand, within MPMX19_05686at 402.423 kb on - strand, within MPMX19_05686at 402.423 kb on - strand, within MPMX19_05686at 402.888 kb on + strand, within MPMX19_05687at 402.889 kb on - strand, within MPMX19_05687at 402.889 kb on - strand, within MPMX19_05687at 402.889 kb on - strand, within MPMX19_05687at 402.890 kb on + strand, within MPMX19_05687at 402.890 kb on + strand, within MPMX19_05687at 402.890 kb on + strand, within MPMX19_05687at 402.890 kb on + strand, within MPMX19_05687at 402.891 kb on - strand, within MPMX19_05687at 403.001 kb on + strand, within MPMX19_05687at 403.001 kb on + strand, within MPMX19_05687at 403.001 kb on + strand, within MPMX19_05687at 403.001 kb on + strand, within MPMX19_05687at 403.001 kb on + strand, within MPMX19_05687at 403.001 kb on + strand, within MPMX19_05687at 403.002 kb on - strand, within MPMX19_05687at 403.002 kb on - strand, within MPMX19_05687at 403.002 kb on - strand, within MPMX19_05687at 403.002 kb on - strand, within MPMX19_05687at 403.002 kb on - strand, within MPMX19_05687at 403.002 kb on - strand, within MPMX19_05687at 403.375 kb on - strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.387 kb on + strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.388 kb on - strandat 403.616 kb on - strand, within MPMX19_05688at 403.616 kb on - strand, within MPMX19_05688at 403.741 kb on + strand, within MPMX19_05688at 403.741 kb on + strand, within MPMX19_05688at 403.741 kb on + strand, within MPMX19_05688at 403.741 kb on + strand, within MPMX19_05688at 403.741 kb on + strand, within MPMX19_05688at 403.741 kb on + strand, within MPMX19_05688at 403.741 kb on + strand, within MPMX19_05688at 403.741 kb on + strand, within MPMX19_05688at 403.742 kb on - strand, within MPMX19_05688at 403.742 kb on - strand, within MPMX19_05688at 403.742 kb on - strand, within MPMX19_05688at 403.742 kb on - strand, within MPMX19_05688at 403.742 kb on - strand, within MPMX19_05688at 403.742 kb on - strand, within MPMX19_05688at 403.742 kb on - strand, within MPMX19_05688at 403.742 kb on - strand, within MPMX19_05688at 403.742 kb on - strand, within MPMX19_05688at 403.742 kb on - strand, within MPMX19_05688at 403.742 kb on - strand, within MPMX19_05688at 403.742 kb on - strand, within MPMX19_05688at 403.993 kb on + strand, within MPMX19_05688at 403.993 kb on + strand, within MPMX19_05688at 403.993 kb on + strand, within MPMX19_05688at 403.993 kb on + strand, within MPMX19_05688at 403.994 kb on - strand, within MPMX19_05688at 403.994 kb on - strand, within MPMX19_05688

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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401,930 + MPMX19_05685 0.69 -1.2
401,930 + MPMX19_05685 0.69 -1.6
401,930 + MPMX19_05685 0.69 -1.3
401,931 - MPMX19_05685 0.69 -1.2
401,931 - MPMX19_05685 0.69 -0.2
401,931 - MPMX19_05685 0.69 +0.8
401,931 - MPMX19_05685 0.69 -0.5
401,931 - MPMX19_05685 0.69 +0.0
401,931 - MPMX19_05685 0.69 -0.2
402,294 + +0.1
402,294 + -2.0
402,294 + -0.5
402,294 + -0.3
402,294 + -0.7
402,294 + -0.6
402,295 - +1.0
402,295 - -0.2
402,295 - -0.6
402,422 + MPMX19_05686 0.17 -0.1
402,422 + MPMX19_05686 0.17 +0.9
402,422 + MPMX19_05686 0.17 +0.6
402,422 + MPMX19_05686 0.17 -0.8
402,422 + MPMX19_05686 0.17 -0.1
402,422 + MPMX19_05686 0.17 -0.0
402,423 - MPMX19_05686 0.18 +1.4
402,423 - MPMX19_05686 0.18 -0.2
402,423 - MPMX19_05686 0.18 -0.4
402,423 - MPMX19_05686 0.18 +0.7
402,423 - MPMX19_05686 0.18 -0.2
402,423 - MPMX19_05686 0.18 -0.4
402,888 + MPMX19_05687 0.15 +0.6
402,889 - MPMX19_05687 0.15 -0.4
402,889 - MPMX19_05687 0.15 -1.4
402,889 - MPMX19_05687 0.15 -1.2
402,890 + MPMX19_05687 0.15 +0.3
402,890 + MPMX19_05687 0.15 -0.7
402,890 + MPMX19_05687 0.15 -0.3
402,890 + MPMX19_05687 0.15 -0.6
402,891 - MPMX19_05687 0.15 -0.5
403,001 + MPMX19_05687 0.37 -1.4
403,001 + MPMX19_05687 0.37 -1.7
403,001 + MPMX19_05687 0.37 -0.3
403,001 + MPMX19_05687 0.37 -2.1
403,001 + MPMX19_05687 0.37 -1.0
403,001 + MPMX19_05687 0.37 -1.9
403,002 - MPMX19_05687 0.38 -1.0
403,002 - MPMX19_05687 0.38 -1.7
403,002 - MPMX19_05687 0.38 -1.3
403,002 - MPMX19_05687 0.38 -0.6
403,002 - MPMX19_05687 0.38 -2.8
403,002 - MPMX19_05687 0.38 -1.2
403,375 - -0.1
403,387 + -1.0
403,387 + +0.9
403,387 + -0.8
403,387 + +1.3
403,387 + +0.5
403,387 + +0.1
403,387 + -1.8
403,387 + +0.0
403,387 + +0.9
403,387 + -0.2
403,387 + -1.7
403,387 + -1.2
403,387 + +0.6
403,387 + -0.7
403,387 + -1.0
403,387 + -0.6
403,387 + -0.1
403,387 + +0.0
403,387 + -0.2
403,387 + -0.8
403,388 - -0.6
403,388 - +0.1
403,388 - -0.2
403,388 - -0.6
403,388 - +0.2
403,388 - +0.0
403,388 - -0.3
403,388 - +1.6
403,388 - -2.6
403,388 - -1.7
403,388 - -0.8
403,388 - -1.1
403,388 - +0.4
403,388 - -0.4
403,388 - +1.0
403,388 - -2.3
403,388 - -1.2
403,616 - MPMX19_05688 0.11 -0.1
403,616 - MPMX19_05688 0.11 +1.4
403,741 + MPMX19_05688 0.15 -0.4
403,741 + MPMX19_05688 0.15 -0.6
403,741 + MPMX19_05688 0.15 -0.6
403,741 + MPMX19_05688 0.15 -0.6
403,741 + MPMX19_05688 0.15 +0.0
403,741 + MPMX19_05688 0.15 -0.3
403,741 + MPMX19_05688 0.15 -0.8
403,741 + MPMX19_05688 0.15 -1.4
403,742 - MPMX19_05688 0.16 -0.4
403,742 - MPMX19_05688 0.16 -1.7
403,742 - MPMX19_05688 0.16 +0.4
403,742 - MPMX19_05688 0.16 -1.2
403,742 - MPMX19_05688 0.16 +0.0
403,742 - MPMX19_05688 0.16 +0.3
403,742 - MPMX19_05688 0.16 -1.2
403,742 - MPMX19_05688 0.16 -0.7
403,742 - MPMX19_05688 0.16 -0.7
403,742 - MPMX19_05688 0.16 +0.5
403,742 - MPMX19_05688 0.16 -0.1
403,742 - MPMX19_05688 0.16 -1.2
403,993 + MPMX19_05688 0.25 -1.3
403,993 + MPMX19_05688 0.25 -1.0
403,993 + MPMX19_05688 0.25 +0.4
403,993 + MPMX19_05688 0.25 -0.2
403,994 - MPMX19_05688 0.25 -0.9
403,994 - MPMX19_05688 0.25 -2.2

Or see this region's nucleotide sequence