Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05436 and MPMX19_05437 are separated by 7 nucleotides MPMX19_05437 and MPMX19_05438 overlap by 8 nucleotides MPMX19_05438 and MPMX19_05439 are separated by 22 nucleotides
MPMX19_05436: MPMX19_05436 - putative isomerase YddE, at 127,144 to 127,950
_05436
MPMX19_05437: MPMX19_05437 - hypothetical protein, at 127,958 to 128,344
_05437
MPMX19_05438: MPMX19_05438 - hypothetical protein, at 128,337 to 128,681
_05438
MPMX19_05439: MPMX19_05439 - hypothetical protein, at 128,704 to 129,723
_05439
Position (kb) 128
129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 127.493 kb on - strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.604 kb on - strand, within MPMX19_05436 at 127.604 kb on - strand, within MPMX19_05436 at 127.604 kb on - strand, within MPMX19_05436 at 127.615 kb on + strand, within MPMX19_05436 at 127.616 kb on - strand, within MPMX19_05436 at 127.653 kb on + strand, within MPMX19_05436 at 127.804 kb on + strand, within MPMX19_05436 at 127.804 kb on + strand, within MPMX19_05436 at 127.804 kb on + strand, within MPMX19_05436 at 127.805 kb on - strand, within MPMX19_05436 at 127.805 kb on - strand, within MPMX19_05436 at 127.805 kb on - strand, within MPMX19_05436 at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.084 kb on + strand, within MPMX19_05437 at 128.084 kb on + strand, within MPMX19_05437 at 128.084 kb on + strand, within MPMX19_05437 at 128.085 kb on - strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.348 kb on + strand at 128.348 kb on + strand at 128.348 kb on + strand at 128.349 kb on - strand at 128.349 kb on - strand at 128.349 kb on - strand at 128.349 kb on - strand at 128.349 kb on - strand at 128.367 kb on + strand at 128.367 kb on + strand at 128.367 kb on + strand at 128.367 kb on + strand at 128.368 kb on - strand at 128.604 kb on + strand, within MPMX19_05438 at 128.604 kb on + strand, within MPMX19_05438 at 128.604 kb on + strand, within MPMX19_05438 at 128.605 kb on - strand, within MPMX19_05438 at 128.605 kb on - strand, within MPMX19_05438 at 128.620 kb on - strand, within MPMX19_05438 at 128.620 kb on - strand, within MPMX19_05438 at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.679 kb on + strand at 128.679 kb on + strand at 128.679 kb on + strand at 128.679 kb on + strand at 128.680 kb on - strand at 128.680 kb on - strand at 128.680 kb on - strand at 128.801 kb on + strand at 128.802 kb on - strand at 128.802 kb on - strand at 128.802 kb on - strand at 128.958 kb on + strand, within MPMX19_05439 at 128.958 kb on + strand, within MPMX19_05439 at 128.959 kb on - strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.287 kb on + strand, within MPMX19_05439 at 129.287 kb on + strand, within MPMX19_05439 at 129.288 kb on - strand, within MPMX19_05439 at 129.288 kb on - strand, within MPMX19_05439 at 129.288 kb on - strand, within MPMX19_05439 at 129.414 kb on + strand, within MPMX19_05439 at 129.414 kb on + strand, within MPMX19_05439 at 129.414 kb on + strand, within MPMX19_05439 at 129.414 kb on + strand, within MPMX19_05439 at 129.415 kb on - strand, within MPMX19_05439 at 129.415 kb on - strand, within MPMX19_05439 at 129.438 kb on + strand, within MPMX19_05439
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 127,493 - MPMX19_05436 0.43 -2.1 127,603 + MPMX19_05436 0.57 -2.2 127,603 + MPMX19_05436 0.57 +0.2 127,603 + MPMX19_05436 0.57 -0.8 127,603 + MPMX19_05436 0.57 -0.8 127,603 + MPMX19_05436 0.57 +0.2 127,603 + MPMX19_05436 0.57 -0.6 127,603 + MPMX19_05436 0.57 +0.1 127,603 + MPMX19_05436 0.57 -0.8 127,603 + MPMX19_05436 0.57 +0.0 127,604 - MPMX19_05436 0.57 +0.3 127,604 - MPMX19_05436 0.57 -1.3 127,604 - MPMX19_05436 0.57 +0.4 127,615 + MPMX19_05436 0.58 +0.4 127,616 - MPMX19_05436 0.58 -0.2 127,653 + MPMX19_05436 0.63 +0.3 127,804 + MPMX19_05436 0.82 -3.4 127,804 + MPMX19_05436 0.82 -0.6 127,804 + MPMX19_05436 0.82 -0.1 127,805 - MPMX19_05436 0.82 -0.3 127,805 - MPMX19_05436 0.82 -0.8 127,805 - MPMX19_05436 0.82 -0.7 127,924 + -0.3 127,924 + -1.0 127,924 + +0.1 127,924 + +0.6 127,924 + +0.1 127,924 + -0.3 127,924 + -0.3 127,924 + +0.2 127,925 - +0.4 127,925 - -0.8 127,925 - -1.3 127,925 - -1.4 127,925 - -1.2 127,925 - -0.5 127,925 - +0.8 128,057 + MPMX19_05437 0.26 +0.6 128,057 + MPMX19_05437 0.26 -0.7 128,057 + MPMX19_05437 0.26 -1.1 128,057 + MPMX19_05437 0.26 -1.1 128,057 + MPMX19_05437 0.26 -0.9 128,057 + MPMX19_05437 0.26 -1.7 128,057 + MPMX19_05437 0.26 -0.3 128,057 + MPMX19_05437 0.26 -0.5 128,058 - MPMX19_05437 0.26 +1.2 128,058 - MPMX19_05437 0.26 -1.0 128,058 - MPMX19_05437 0.26 +0.3 128,058 - MPMX19_05437 0.26 +1.9 128,058 - MPMX19_05437 0.26 +0.1 128,058 - MPMX19_05437 0.26 -0.5 128,084 + MPMX19_05437 0.33 +0.8 128,084 + MPMX19_05437 0.33 -1.0 128,084 + MPMX19_05437 0.33 -0.2 128,085 - MPMX19_05437 0.33 -0.4 128,168 + MPMX19_05437 0.54 +0.4 128,168 + MPMX19_05437 0.54 -0.7 128,168 + MPMX19_05437 0.54 -0.3 128,168 + MPMX19_05437 0.54 -0.1 128,168 + MPMX19_05437 0.54 -0.2 128,168 + MPMX19_05437 0.54 -1.2 128,168 + MPMX19_05437 0.54 +0.4 128,168 + MPMX19_05437 0.54 -1.1 128,168 + MPMX19_05437 0.54 +0.2 128,168 + MPMX19_05437 0.54 -0.2 128,168 + MPMX19_05437 0.54 -0.7 128,168 + MPMX19_05437 0.54 -0.2 128,168 + MPMX19_05437 0.54 -1.4 128,168 + MPMX19_05437 0.54 -0.4 128,169 - MPMX19_05437 0.55 +0.3 128,169 - MPMX19_05437 0.55 +0.3 128,169 - MPMX19_05437 0.55 -1.7 128,169 - MPMX19_05437 0.55 -1.8 128,169 - MPMX19_05437 0.55 +0.4 128,169 - MPMX19_05437 0.55 -0.1 128,169 - MPMX19_05437 0.55 -0.7 128,169 - MPMX19_05437 0.55 -0.6 128,169 - MPMX19_05437 0.55 -1.0 128,169 - MPMX19_05437 0.55 +1.4 128,169 - MPMX19_05437 0.55 -0.7 128,169 - MPMX19_05437 0.55 -0.4 128,169 - MPMX19_05437 0.55 +0.5 128,169 - MPMX19_05437 0.55 -0.5 128,169 - MPMX19_05437 0.55 +0.8 128,169 - MPMX19_05437 0.55 +0.0 128,174 + MPMX19_05437 0.56 +0.2 128,174 + MPMX19_05437 0.56 -0.5 128,174 + MPMX19_05437 0.56 -0.1 128,174 + MPMX19_05437 0.56 +2.0 128,174 + MPMX19_05437 0.56 +0.1 128,174 + MPMX19_05437 0.56 +0.1 128,174 + MPMX19_05437 0.56 -1.7 128,174 + MPMX19_05437 0.56 -0.1 128,174 + MPMX19_05437 0.56 +0.4 128,174 + MPMX19_05437 0.56 -0.6 128,174 + MPMX19_05437 0.56 -1.6 128,174 + MPMX19_05437 0.56 +0.7 128,174 + MPMX19_05437 0.56 -1.7 128,174 + MPMX19_05437 0.56 -0.9 128,174 + MPMX19_05437 0.56 -0.2 128,174 + MPMX19_05437 0.56 -1.2 128,174 + MPMX19_05437 0.56 +1.1 128,175 - MPMX19_05437 0.56 +0.3 128,175 - MPMX19_05437 0.56 +0.0 128,175 - MPMX19_05437 0.56 -1.6 128,175 - MPMX19_05437 0.56 +0.1 128,175 - MPMX19_05437 0.56 -1.2 128,175 - MPMX19_05437 0.56 -0.8 128,175 - MPMX19_05437 0.56 -0.2 128,175 - MPMX19_05437 0.56 +0.1 128,175 - MPMX19_05437 0.56 +0.6 128,175 - MPMX19_05437 0.56 -0.4 128,348 + +0.5 128,348 + -1.1 128,348 + +0.4 128,349 - -1.2 128,349 - -1.6 128,349 - +0.9 128,349 - -0.4 128,349 - +0.4 128,367 + +0.2 128,367 + +1.0 128,367 + -0.0 128,367 + -1.8 128,368 - +1.0 128,604 + MPMX19_05438 0.77 -2.6 128,604 + MPMX19_05438 0.77 -0.0 128,604 + MPMX19_05438 0.77 -0.7 128,605 - MPMX19_05438 0.78 -0.6 128,605 - MPMX19_05438 0.78 -3.6 128,620 - MPMX19_05438 0.82 -0.3 128,620 - MPMX19_05438 0.82 +0.2 128,667 + +0.6 128,667 + +0.3 128,667 + -0.7 128,667 + +0.4 128,667 + +0.0 128,667 + -0.1 128,667 + -0.7 128,667 + +0.1 128,667 + -0.2 128,667 + -0.9 128,667 + +0.3 128,667 + +0.5 128,667 + -0.5 128,667 + +0.0 128,667 + -1.2 128,667 + -0.8 128,667 + +0.0 128,668 - +0.0 128,668 - -0.8 128,668 - -0.9 128,668 - +0.1 128,668 - -1.3 128,668 - -0.8 128,668 - -0.6 128,668 - +0.3 128,668 - -0.1 128,668 - -0.4 128,668 - -1.1 128,668 - -0.6 128,668 - -0.2 128,668 - +0.6 128,679 + -1.5 128,679 + -0.1 128,679 + -1.2 128,679 + -0.1 128,680 - -1.7 128,680 - -0.3 128,680 - -0.2 128,801 + -1.2 128,802 - +0.6 128,802 - -2.2 128,802 - -1.7 128,958 + MPMX19_05439 0.25 +0.4 128,958 + MPMX19_05439 0.25 -0.6 128,959 - MPMX19_05439 0.25 -1.0 129,152 + MPMX19_05439 0.44 -0.3 129,152 + MPMX19_05439 0.44 -0.3 129,152 + MPMX19_05439 0.44 -1.6 129,152 + MPMX19_05439 0.44 -1.7 129,152 + MPMX19_05439 0.44 -0.8 129,152 + MPMX19_05439 0.44 +0.6 129,152 + MPMX19_05439 0.44 -0.1 129,152 + MPMX19_05439 0.44 -0.4 129,153 - MPMX19_05439 0.44 +0.2 129,153 - MPMX19_05439 0.44 +0.1 129,153 - MPMX19_05439 0.44 -1.3 129,153 - MPMX19_05439 0.44 -0.7 129,153 - MPMX19_05439 0.44 +1.6 129,153 - MPMX19_05439 0.44 -0.3 129,287 + MPMX19_05439 0.57 +0.2 129,287 + MPMX19_05439 0.57 -0.2 129,288 - MPMX19_05439 0.57 -1.6 129,288 - MPMX19_05439 0.57 -1.8 129,288 - MPMX19_05439 0.57 +0.1 129,414 + MPMX19_05439 0.70 -1.0 129,414 + MPMX19_05439 0.70 +0.3 129,414 + MPMX19_05439 0.70 +0.0 129,414 + MPMX19_05439 0.70 -1.2 129,415 - MPMX19_05439 0.70 -0.7 129,415 - MPMX19_05439 0.70 +0.6 129,438 + MPMX19_05439 0.72 +1.1
Or see this region's nucleotide sequence