Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05341 and MPMX19_05342 are separated by 79 nucleotides MPMX19_05342 and MPMX19_05343 are separated by 147 nucleotides
MPMX19_05341: MPMX19_05341 - hypothetical protein, at 13,975 to 14,751
_05341
MPMX19_05342: MPMX19_05342 - hypothetical protein, at 14,831 to 15,103
_05342
MPMX19_05343: MPMX19_05343 - hypothetical protein, at 15,251 to 16,255
_05343
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 13.836 kb on - strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.947 kb on + strand at 13.947 kb on + strand at 13.948 kb on - strand at 13.948 kb on - strand at 13.948 kb on - strand at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.259 kb on + strand, within MPMX19_05341 at 14.259 kb on + strand, within MPMX19_05341 at 14.260 kb on - strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.671 kb on + strand, within MPMX19_05341 at 14.672 kb on - strand, within MPMX19_05341 at 14.672 kb on - strand, within MPMX19_05341 at 14.672 kb on - strand, within MPMX19_05341 at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.749 kb on + strand at 14.909 kb on + strand, within MPMX19_05342 at 14.909 kb on + strand, within MPMX19_05342 at 14.909 kb on + strand, within MPMX19_05342 at 14.909 kb on + strand, within MPMX19_05342 at 14.910 kb on - strand, within MPMX19_05342 at 14.910 kb on - strand, within MPMX19_05342 at 14.942 kb on + strand, within MPMX19_05342 at 14.942 kb on + strand, within MPMX19_05342 at 14.942 kb on + strand, within MPMX19_05342 at 14.943 kb on - strand, within MPMX19_05342 at 14.943 kb on - strand, within MPMX19_05342 at 14.943 kb on - strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.054 kb on - strand, within MPMX19_05342 at 15.054 kb on - strand, within MPMX19_05342 at 15.054 kb on - strand, within MPMX19_05342 at 15.180 kb on - strand at 15.362 kb on + strand, within MPMX19_05343 at 15.362 kb on + strand, within MPMX19_05343 at 15.363 kb on - strand, within MPMX19_05343 at 15.363 kb on - strand, within MPMX19_05343 at 15.363 kb on - strand, within MPMX19_05343 at 15.545 kb on + strand, within MPMX19_05343 at 15.545 kb on + strand, within MPMX19_05343 at 15.545 kb on + strand, within MPMX19_05343 at 15.546 kb on - strand, within MPMX19_05343 at 15.546 kb on - strand, within MPMX19_05343 at 15.546 kb on - strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 13,836 - +0.0 13,895 + +0.5 13,895 + +0.7 13,895 + -0.2 13,895 + +0.1 13,895 + -0.6 13,895 + +1.2 13,895 + -1.1 13,895 + -1.6 13,896 - -0.1 13,896 - -0.5 13,896 - -0.7 13,896 - +0.4 13,896 - -0.7 13,896 - +0.5 13,896 - +1.6 13,896 - +0.2 13,947 + +0.2 13,947 + +0.0 13,948 - -0.4 13,948 - -1.5 13,948 - -1.8 14,167 + MPMX19_05341 0.25 -0.5 14,167 + MPMX19_05341 0.25 +0.0 14,167 + MPMX19_05341 0.25 -0.3 14,167 + MPMX19_05341 0.25 -2.4 14,167 + MPMX19_05341 0.25 +0.2 14,167 + MPMX19_05341 0.25 +0.5 14,167 + MPMX19_05341 0.25 -0.2 14,167 + MPMX19_05341 0.25 -1.6 14,167 + MPMX19_05341 0.25 -0.4 14,167 + MPMX19_05341 0.25 -0.8 14,168 - MPMX19_05341 0.25 -1.0 14,168 - MPMX19_05341 0.25 +0.5 14,168 - MPMX19_05341 0.25 -0.3 14,168 - MPMX19_05341 0.25 -1.3 14,168 - MPMX19_05341 0.25 -0.3 14,168 - MPMX19_05341 0.25 -0.2 14,168 - MPMX19_05341 0.25 +1.6 14,168 - MPMX19_05341 0.25 -1.1 14,168 - MPMX19_05341 0.25 -0.4 14,259 + MPMX19_05341 0.37 +1.6 14,259 + MPMX19_05341 0.37 +0.1 14,260 - MPMX19_05341 0.37 -1.2 14,320 + MPMX19_05341 0.44 +0.2 14,320 + MPMX19_05341 0.44 +0.4 14,320 + MPMX19_05341 0.44 +0.4 14,320 + MPMX19_05341 0.44 -0.2 14,320 + MPMX19_05341 0.44 +0.1 14,320 + MPMX19_05341 0.44 -0.4 14,320 + MPMX19_05341 0.44 -0.6 14,320 + MPMX19_05341 0.44 -0.0 14,320 + MPMX19_05341 0.44 +0.6 14,321 - MPMX19_05341 0.45 -0.4 14,321 - MPMX19_05341 0.45 -1.6 14,321 - MPMX19_05341 0.45 -0.3 14,321 - MPMX19_05341 0.45 -1.4 14,321 - MPMX19_05341 0.45 -0.2 14,321 - MPMX19_05341 0.45 -0.6 14,321 - MPMX19_05341 0.45 -0.2 14,321 - MPMX19_05341 0.45 -0.8 14,321 - MPMX19_05341 0.45 -0.2 14,321 - MPMX19_05341 0.45 +0.4 14,596 + MPMX19_05341 0.80 -1.8 14,596 + MPMX19_05341 0.80 -0.4 14,596 + MPMX19_05341 0.80 -0.3 14,596 + MPMX19_05341 0.80 -1.6 14,596 + MPMX19_05341 0.80 +0.1 14,597 - MPMX19_05341 0.80 -0.2 14,597 - MPMX19_05341 0.80 -0.1 14,597 - MPMX19_05341 0.80 -1.8 14,597 - MPMX19_05341 0.80 +1.4 14,597 - MPMX19_05341 0.80 -1.8 14,597 - MPMX19_05341 0.80 -2.0 14,671 + MPMX19_05341 0.90 -0.2 14,672 - MPMX19_05341 0.90 -0.8 14,672 - MPMX19_05341 0.90 -0.1 14,672 - MPMX19_05341 0.90 -0.1 14,709 + -0.3 14,709 + -0.2 14,709 + +0.4 14,709 + +0.5 14,709 + +0.4 14,709 + +0.4 14,709 + -0.4 14,709 + +0.2 14,709 + +0.3 14,709 + -0.2 14,709 + +0.6 14,710 - +0.2 14,710 - -1.7 14,710 - -2.1 14,710 - -0.4 14,710 - +0.4 14,710 - -0.1 14,710 - -0.8 14,710 - -1.6 14,710 - -0.2 14,710 - +0.4 14,749 + -1.2 14,909 + MPMX19_05342 0.29 +0.3 14,909 + MPMX19_05342 0.29 +0.8 14,909 + MPMX19_05342 0.29 +0.2 14,909 + MPMX19_05342 0.29 -0.6 14,910 - MPMX19_05342 0.29 -0.5 14,910 - MPMX19_05342 0.29 -1.3 14,942 + MPMX19_05342 0.41 -1.6 14,942 + MPMX19_05342 0.41 +1.3 14,942 + MPMX19_05342 0.41 -0.9 14,943 - MPMX19_05342 0.41 -1.8 14,943 - MPMX19_05342 0.41 -0.2 14,943 - MPMX19_05342 0.41 +0.3 15,053 + MPMX19_05342 0.81 -0.9 15,053 + MPMX19_05342 0.81 +0.7 15,053 + MPMX19_05342 0.81 +3.4 15,053 + MPMX19_05342 0.81 -1.1 15,053 + MPMX19_05342 0.81 +0.4 15,053 + MPMX19_05342 0.81 +0.0 15,053 + MPMX19_05342 0.81 -1.0 15,054 - MPMX19_05342 0.82 +0.0 15,054 - MPMX19_05342 0.82 -0.2 15,054 - MPMX19_05342 0.82 +1.3 15,180 - -0.6 15,362 + MPMX19_05343 0.11 -0.7 15,362 + MPMX19_05343 0.11 -1.4 15,363 - MPMX19_05343 0.11 +0.0 15,363 - MPMX19_05343 0.11 +0.8 15,363 - MPMX19_05343 0.11 +0.6 15,545 + MPMX19_05343 0.29 +0.1 15,545 + MPMX19_05343 0.29 -0.2 15,545 + MPMX19_05343 0.29 +1.1 15,546 - MPMX19_05343 0.29 -0.8 15,546 - MPMX19_05343 0.29 -0.4 15,546 - MPMX19_05343 0.29 -1.0 15,935 + MPMX19_05343 0.68 -0.1 15,935 + MPMX19_05343 0.68 -0.7 15,935 + MPMX19_05343 0.68 +0.6 15,935 + MPMX19_05343 0.68 +0.9 15,935 + MPMX19_05343 0.68 +1.0 15,936 - MPMX19_05343 0.68 -0.2 15,936 - MPMX19_05343 0.68 -0.3 15,936 - MPMX19_05343 0.68 +0.0 15,936 - MPMX19_05343 0.68 -0.6
Or see this region's nucleotide sequence