Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05337

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
7,641	+		MPMX19_05336	0.67	-0.7
7,641	+		MPMX19_05336	0.67	-0.4
7,641	+		MPMX19_05336	0.67	-0.5
7,641	+		MPMX19_05336	0.67	-1.2
7,641	+		MPMX19_05336	0.67	-0.6
7,641	+		MPMX19_05336	0.67	-0.3
7,641	+		MPMX19_05336	0.67	-0.4
7,641	+		MPMX19_05336	0.67	-0.7
7,641	+		MPMX19_05336	0.67	-1.8
7,642	-		MPMX19_05336	0.67	+0.6
7,642	-		MPMX19_05336	0.67	-0.3
7,642	-		MPMX19_05336	0.67	+0.2
7,642	-		MPMX19_05336	0.67	+0.6
7,642	-		MPMX19_05336	0.67	-0.4
7,854	+		MPMX19_05336	0.75	-0.7
7,854	+		MPMX19_05336	0.75	-1.6
7,854	+		MPMX19_05336	0.75	+0.6
7,854	+		MPMX19_05336	0.75	-1.1
7,855	-		MPMX19_05336	0.75	-1.3
7,855	-		MPMX19_05336	0.75	-0.3
7,855	-		MPMX19_05336	0.75	-1.3
7,954	-		MPMX19_05336	0.78	-1.0
7,954	-		MPMX19_05336	0.78	+0.6
8,085	+		MPMX19_05336	0.83	+0.2
8,085	+		MPMX19_05336	0.83	+0.6
8,085	+		MPMX19_05336	0.83	-0.8
8,085	+		MPMX19_05336	0.83	-0.4
8,085	+		MPMX19_05336	0.83	-1.2
8,085	+		MPMX19_05336	0.83	-0.4
8,085	+		MPMX19_05336	0.83	+0.1
8,085	+		MPMX19_05336	0.83	-0.6
8,085	+		MPMX19_05336	0.83	-0.4
8,085	+		MPMX19_05336	0.83	-1.0
8,086	-		MPMX19_05336	0.83	-1.5
8,086	-		MPMX19_05336	0.83	+0.3
8,086	-		MPMX19_05336	0.83	-1.0
8,086	-		MPMX19_05336	0.83	-1.4
8,086	-		MPMX19_05336	0.83	-1.5
8,086	-		MPMX19_05336	0.83	-0.2
8,086	-		MPMX19_05336	0.83	-0.2
8,086	-		MPMX19_05336	0.83	-0.6
8,136	+		MPMX19_05336	0.85	+0.0
8,136	+		MPMX19_05336	0.85	+0.4
8,136	+		MPMX19_05336	0.85	-1.1
8,136	+		MPMX19_05336	0.85	-0.6
8,136	+		MPMX19_05336	0.85	-1.0
8,136	+		MPMX19_05336	0.85	-0.4
8,136	+		MPMX19_05336	0.85	-0.4
8,136	+		MPMX19_05336	0.85	+0.2
8,136	+		MPMX19_05336	0.85	+0.9
8,136	+		MPMX19_05336	0.85	-0.2
8,136	+		MPMX19_05336	0.85	-0.5
8,137	-		MPMX19_05336	0.85	-0.6
8,137	-		MPMX19_05336	0.85	+0.3
8,137	-		MPMX19_05336	0.85	-0.1
8,137	-		MPMX19_05336	0.85	+0.1
8,137	-		MPMX19_05336	0.85	+0.9
8,137	-		MPMX19_05336	0.85	-1.6
8,137	-		MPMX19_05336	0.85	-1.3
8,137	-		MPMX19_05336	0.85	-0.6
8,137	-		MPMX19_05336	0.85	-0.4
8,247	+		MPMX19_05336	0.89	-1.0
8,247	+		MPMX19_05336	0.89	+0.4
8,247	+		MPMX19_05336	0.89	-1.7
8,247	+		MPMX19_05336	0.89	+1.6
8,247	+		MPMX19_05336	0.89	-0.4
8,247	+		MPMX19_05336	0.89	-0.5
8,247	+		MPMX19_05336	0.89	-0.1
8,247	+		MPMX19_05336	0.89	-0.1
8,247	+		MPMX19_05336	0.89	+0.0
8,247	+		MPMX19_05336	0.89	-2.7
8,247	+		MPMX19_05336	0.89	+0.7
8,247	+		MPMX19_05336	0.89	-0.4
8,247	+		MPMX19_05336	0.89	-1.7
8,247	+		MPMX19_05336	0.89	-0.2
8,247	+		MPMX19_05336	0.89	-1.4
8,247	+		MPMX19_05336	0.89	+1.1
8,247	+		MPMX19_05336	0.89	+1.6
8,247	+		MPMX19_05336	0.89	-0.3
8,247	+		MPMX19_05336	0.89	+0.0
8,248	-		MPMX19_05336	0.89	+0.3
8,248	-		MPMX19_05336	0.89	-0.3
8,248	-		MPMX19_05336	0.89	-0.3
8,248	-		MPMX19_05336	0.89	+1.3
8,248	-		MPMX19_05336	0.89	-0.4
8,248	-		MPMX19_05336	0.89	+0.4
8,248	-		MPMX19_05336	0.89	-0.4
8,248	-		MPMX19_05336	0.89	-0.3
8,248	-		MPMX19_05336	0.89	-0.2
8,248	-		MPMX19_05336	0.89	-0.4
8,248	-		MPMX19_05336	0.89	-0.4
8,248	-		MPMX19_05336	0.89	-1.7
8,248	-		MPMX19_05336	0.89	+1.7
8,248	-		MPMX19_05336	0.89	+0.0
8,248	-		MPMX19_05336	0.89	-1.0
8,248	-		MPMX19_05336	0.89	-1.6
8,248	-		MPMX19_05336	0.89	-0.3
8,248	-		MPMX19_05336	0.89	-0.8
8,248	-		MPMX19_05336	0.89	+0.7
8,248	-		MPMX19_05336	0.89	-1.2
8,248	-		MPMX19_05336	0.89	-0.3
8,664	+				+0.2
8,664	+				+0.1
8,664	+				+0.2
8,664	+				-0.7
8,665	-				-1.3
8,665	-				+0.4
8,665	-				+0.2
8,665	-				-1.6
8,665	-				-1.3
8,665	-				+0.0
8,665	-				+0.3
8,685	+				+0.6
8,685	+				-1.6
8,685	+				-0.6
8,859	+		MPMX19_05337	0.25	+0.8
8,859	+		MPMX19_05337	0.25	-0.4
8,860	-		MPMX19_05337	0.25	+0.4
8,860	-		MPMX19_05337	0.25	-2.0
8,860	-		MPMX19_05337	0.25	-2.0
8,860	-		MPMX19_05337	0.25	-1.0
8,860	-		MPMX19_05337	0.25	-0.2
9,075	+		MPMX19_05337	0.44	-0.4
9,075	+		MPMX19_05337	0.44	+0.6
9,075	+		MPMX19_05337	0.44	+0.6
9,075	+		MPMX19_05337	0.44	+0.3
9,076	-		MPMX19_05337	0.45	+0.4
9,076	-		MPMX19_05337	0.45	+0.2
9,092	+		MPMX19_05337	0.46	+0.0
9,093	-		MPMX19_05337	0.46	-1.7
9,297	+		MPMX19_05337	0.64	+0.3
9,297	+		MPMX19_05337	0.64	+0.8
9,297	+		MPMX19_05337	0.64	-0.8
9,297	+		MPMX19_05337	0.64	+0.0
9,297	+		MPMX19_05337	0.64	+0.4
9,297	+		MPMX19_05337	0.64	-0.6
9,297	+		MPMX19_05337	0.64	-0.2
9,297	+		MPMX19_05337	0.64	+1.2
9,297	+		MPMX19_05337	0.64	+0.8
9,297	+		MPMX19_05337	0.64	-0.1
9,297	+		MPMX19_05337	0.64	-0.4
9,297	+		MPMX19_05337	0.64	-0.8
9,298	-		MPMX19_05337	0.64	+0.6
9,298	-		MPMX19_05337	0.64	+0.4
9,298	-		MPMX19_05337	0.64	-0.2
9,298	-		MPMX19_05337	0.64	+0.6
9,298	-		MPMX19_05337	0.64	-0.3
9,298	-		MPMX19_05337	0.64	+0.0
9,298	-		MPMX19_05337	0.64	+0.7
9,298	-		MPMX19_05337	0.64	-0.7
9,298	-		MPMX19_05337	0.64	-1.1
9,298	-		MPMX19_05337	0.64	-1.2
9,298	-		MPMX19_05337	0.64	-0.1
9,298	-		MPMX19_05337	0.64	+0.0
9,372	+		MPMX19_05337	0.71	+0.0
9,372	+		MPMX19_05337	0.71	+0.2
9,372	+		MPMX19_05337	0.71	-1.0
9,373	-		MPMX19_05337	0.71	+0.0
9,373	-		MPMX19_05337	0.71	-2.3
9,373	-		MPMX19_05337	0.71	+1.6
9,373	-		MPMX19_05337	0.71	-1.7
9,373	-		MPMX19_05337	0.71	+0.2
9,373	-		MPMX19_05337	0.71	+0.6
9,373	-		MPMX19_05337	0.71	-0.3
9,700	-				-0.2