Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04965 and MPMX19_04966 are separated by 183 nucleotides MPMX19_04966 and MPMX19_04967 overlap by 4 nucleotides
MPMX19_04965: MPMX19_04965 - Lipopolysaccharide assembly protein B, at 429,004 to 431,145
_04965
MPMX19_04966: MPMX19_04966 - hypothetical protein, at 431,329 to 432,492
_04966
MPMX19_04967: MPMX19_04967 - ADP-heptose--LPS heptosyltransferase 2, at 432,489 to 433,499
_04967
Position (kb) 431
432
433 Strain fitness (log2 ratio) -2
-1
0
1
2 at 430.374 kb on - strand, within MPMX19_04965 at 430.679 kb on + strand, within MPMX19_04965 at 430.679 kb on + strand, within MPMX19_04965 at 430.679 kb on + strand, within MPMX19_04965 at 430.752 kb on - strand, within MPMX19_04965 at 430.838 kb on + strand, within MPMX19_04965 at 430.838 kb on + strand, within MPMX19_04965 at 430.839 kb on - strand, within MPMX19_04965 at 430.839 kb on - strand, within MPMX19_04965 at 430.839 kb on - strand, within MPMX19_04965 at 430.839 kb on - strand, within MPMX19_04965 at 430.946 kb on + strand at 430.946 kb on + strand at 430.947 kb on - strand at 431.087 kb on + strand at 431.087 kb on + strand at 431.087 kb on + strand at 431.087 kb on + strand at 431.087 kb on + strand at 431.087 kb on + strand at 431.087 kb on + strand at 431.087 kb on + strand at 431.088 kb on - strand at 431.088 kb on - strand at 431.088 kb on - strand at 431.088 kb on - strand at 431.088 kb on - strand at 431.088 kb on - strand at 431.088 kb on - strand at 431.088 kb on - strand at 431.307 kb on + strand at 431.307 kb on + strand at 431.307 kb on + strand at 431.307 kb on + strand at 431.307 kb on + strand at 431.307 kb on + strand at 431.307 kb on + strand at 431.307 kb on + strand at 431.307 kb on + strand at 433.436 kb on + strand at 433.483 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 430,374 - MPMX19_04965 0.64 -0.6 430,679 + MPMX19_04965 0.78 +0.4 430,679 + MPMX19_04965 0.78 -0.2 430,679 + MPMX19_04965 0.78 +1.2 430,752 - MPMX19_04965 0.82 -1.5 430,838 + MPMX19_04965 0.86 -1.8 430,838 + MPMX19_04965 0.86 -0.0 430,839 - MPMX19_04965 0.86 +0.4 430,839 - MPMX19_04965 0.86 -0.6 430,839 - MPMX19_04965 0.86 +0.3 430,839 - MPMX19_04965 0.86 -1.5 430,946 + +1.2 430,946 + +0.1 430,947 - +2.0 431,087 + -1.9 431,087 + +1.3 431,087 + -0.3 431,087 + -0.2 431,087 + -1.1 431,087 + -1.2 431,087 + -1.0 431,087 + +0.2 431,088 - -0.6 431,088 - -0.6 431,088 - -1.2 431,088 - -2.2 431,088 - -2.0 431,088 - +0.5 431,088 - -0.2 431,088 - -0.0 431,307 + -0.4 431,307 + +0.7 431,307 + -1.5 431,307 + -1.3 431,307 + -0.8 431,307 + -2.2 431,307 + -1.9 431,307 + -0.5 431,307 + -1.4 433,436 + -0.0 433,483 + +1.4
Or see this region's nucleotide sequence