Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04914

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04913 and MPMX19_04914 are separated by 35 nucleotidesMPMX19_04914 and MPMX19_04915 are separated by 19 nucleotides MPMX19_04913: MPMX19_04913 - hypothetical protein, at 369,515 to 370,816 _04913 MPMX19_04914: MPMX19_04914 - hypothetical protein, at 370,852 to 371,226 _04914 MPMX19_04915: MPMX19_04915 - Riboflavin transporter, at 371,246 to 372,148 _04915 Position (kb) 370 371 372Strain fitness (log2 ratio) -2 -1 0 1 2at 370.096 kb on + strand, within MPMX19_04913at 370.096 kb on + strand, within MPMX19_04913at 370.097 kb on - strand, within MPMX19_04913at 370.097 kb on - strand, within MPMX19_04913at 370.727 kb on + strandat 370.728 kb on - strandat 370.728 kb on - strandat 370.728 kb on - strandat 370.730 kb on - strandat 370.777 kb on + strandat 370.777 kb on + strandat 370.777 kb on + strandat 370.777 kb on + strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.864 kb on + strandat 370.864 kb on + strandat 370.864 kb on + strandat 370.865 kb on - strandat 370.865 kb on - strandat 370.865 kb on - strandat 370.865 kb on - strandat 370.927 kb on + strand, within MPMX19_04914at 370.927 kb on + strand, within MPMX19_04914at 370.927 kb on + strand, within MPMX19_04914at 371.021 kb on - strand, within MPMX19_04914at 371.021 kb on - strand, within MPMX19_04914at 371.021 kb on - strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.099 kb on - strand, within MPMX19_04914at 371.099 kb on - strand, within MPMX19_04914at 371.099 kb on - strand, within MPMX19_04914at 371.099 kb on - strand, within MPMX19_04914at 371.099 kb on - strand, within MPMX19_04914at 371.099 kb on - strand, within MPMX19_04914at 371.164 kb on + strand, within MPMX19_04914at 371.164 kb on + strand, within MPMX19_04914at 371.164 kb on + strand, within MPMX19_04914at 371.164 kb on + strand, within MPMX19_04914at 371.165 kb on - strand, within MPMX19_04914at 371.165 kb on - strand, within MPMX19_04914at 371.165 kb on - strand, within MPMX19_04914at 371.212 kb on + strandat 371.213 kb on - strandat 371.213 kb on - strandat 371.224 kb on + strandat 371.224 kb on + strandat 371.224 kb on + strandat 371.224 kb on + strandat 371.247 kb on + strandat 371.247 kb on + strandat 371.247 kb on + strandat 371.247 kb on + strandat 371.247 kb on + strandat 371.247 kb on + strandat 371.248 kb on - strandat 371.248 kb on - strandat 371.248 kb on - strandat 371.248 kb on - strandat 371.248 kb on - strandat 371.248 kb on - strandat 371.305 kb on - strandat 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.866 kb on - strand, within MPMX19_04915at 371.866 kb on - strand, within MPMX19_04915at 371.880 kb on + strand, within MPMX19_04915at 371.880 kb on + strand, within MPMX19_04915at 371.880 kb on + strand, within MPMX19_04915at 371.881 kb on - strand, within MPMX19_04915at 371.881 kb on - strand, within MPMX19_04915at 371.881 kb on - strand, within MPMX19_04915at 372.218 kb on + strandat 372.218 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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370,096 + MPMX19_04913 0.45 -0.5
370,096 + MPMX19_04913 0.45 +0.9
370,097 - MPMX19_04913 0.45 -0.6
370,097 - MPMX19_04913 0.45 -0.6
370,727 + -0.0
370,728 - +0.3
370,728 - -0.1
370,728 - -1.3
370,730 - +0.5
370,777 + -1.8
370,777 + +0.7
370,777 + -1.6
370,777 + -0.0
370,778 - -1.5
370,778 - -0.1
370,778 - -1.6
370,778 - -0.1
370,778 - -0.1
370,778 - +0.4
370,778 - +0.1
370,778 - -0.1
370,778 - -0.5
370,778 - -0.5
370,864 + -0.3
370,864 + +0.1
370,864 + -0.1
370,865 - +0.2
370,865 - +0.3
370,865 - -0.5
370,865 - -1.0
370,927 + MPMX19_04914 0.20 -0.3
370,927 + MPMX19_04914 0.20 -0.2
370,927 + MPMX19_04914 0.20 +0.2
371,021 - MPMX19_04914 0.45 -0.3
371,021 - MPMX19_04914 0.45 -0.3
371,021 - MPMX19_04914 0.45 +0.2
371,098 + MPMX19_04914 0.66 -0.6
371,098 + MPMX19_04914 0.66 -1.3
371,098 + MPMX19_04914 0.66 +1.5
371,098 + MPMX19_04914 0.66 -1.8
371,098 + MPMX19_04914 0.66 -0.1
371,098 + MPMX19_04914 0.66 -0.2
371,098 + MPMX19_04914 0.66 +0.3
371,098 + MPMX19_04914 0.66 -0.1
371,099 - MPMX19_04914 0.66 +0.2
371,099 - MPMX19_04914 0.66 +1.7
371,099 - MPMX19_04914 0.66 +0.5
371,099 - MPMX19_04914 0.66 +0.2
371,099 - MPMX19_04914 0.66 -0.0
371,099 - MPMX19_04914 0.66 -1.6
371,164 + MPMX19_04914 0.83 -1.5
371,164 + MPMX19_04914 0.83 -0.1
371,164 + MPMX19_04914 0.83 +0.7
371,164 + MPMX19_04914 0.83 +0.9
371,165 - MPMX19_04914 0.83 +0.3
371,165 - MPMX19_04914 0.83 +0.2
371,165 - MPMX19_04914 0.83 -0.2
371,212 + -1.1
371,213 - -0.7
371,213 - -1.1
371,224 + +0.6
371,224 + +0.5
371,224 + -0.1
371,224 + +2.1
371,247 + +0.1
371,247 + -0.1
371,247 + -1.5
371,247 + +0.0
371,247 + -0.4
371,247 + -0.1
371,248 - -0.1
371,248 - +0.6
371,248 - +0.3
371,248 - -0.2
371,248 - +0.2
371,248 - -0.2
371,305 - -0.3
371,418 + MPMX19_04915 0.19 -0.5
371,418 + MPMX19_04915 0.19 +0.7
371,418 + MPMX19_04915 0.19 -1.1
371,418 + MPMX19_04915 0.19 +0.4
371,418 + MPMX19_04915 0.19 -1.0
371,418 + MPMX19_04915 0.19 +0.5
371,418 + MPMX19_04915 0.19 +0.8
371,418 + MPMX19_04915 0.19 -0.1
371,418 + MPMX19_04915 0.19 +0.1
371,418 + MPMX19_04915 0.19 -0.9
371,418 + MPMX19_04915 0.19 -0.6
371,418 + MPMX19_04915 0.19 +1.4
371,418 + MPMX19_04915 0.19 +0.3
371,418 + MPMX19_04915 0.19 +0.4
371,419 - MPMX19_04915 0.19 +0.7
371,419 - MPMX19_04915 0.19 +0.5
371,419 - MPMX19_04915 0.19 -1.2
371,419 - MPMX19_04915 0.19 -1.4
371,419 - MPMX19_04915 0.19 -0.6
371,419 - MPMX19_04915 0.19 +0.1
371,419 - MPMX19_04915 0.19 -0.1
371,419 - MPMX19_04915 0.19 -0.1
371,419 - MPMX19_04915 0.19 +1.1
371,419 - MPMX19_04915 0.19 -2.0
371,419 - MPMX19_04915 0.19 -0.1
371,419 - MPMX19_04915 0.19 -0.3
371,419 - MPMX19_04915 0.19 +0.3
371,419 - MPMX19_04915 0.19 -0.6
371,419 - MPMX19_04915 0.19 -1.4
371,419 - MPMX19_04915 0.19 -1.5
371,835 + MPMX19_04915 0.65 -0.2
371,835 + MPMX19_04915 0.65 -2.4
371,835 + MPMX19_04915 0.65 +1.3
371,835 + MPMX19_04915 0.65 +0.9
371,835 + MPMX19_04915 0.65 -0.7
371,835 + MPMX19_04915 0.65 -0.3
371,835 + MPMX19_04915 0.65 -0.3
371,835 + MPMX19_04915 0.65 -0.5
371,835 + MPMX19_04915 0.65 -0.3
371,835 + MPMX19_04915 0.65 -0.8
371,835 + MPMX19_04915 0.65 -0.7
371,835 + MPMX19_04915 0.65 -0.4
371,835 + MPMX19_04915 0.65 +0.7
371,835 + MPMX19_04915 0.65 -0.5
371,835 + MPMX19_04915 0.65 -2.0
371,835 + MPMX19_04915 0.65 -0.5
371,835 + MPMX19_04915 0.65 -0.9
371,835 + MPMX19_04915 0.65 +0.4
371,835 + MPMX19_04915 0.65 -1.6
371,835 + MPMX19_04915 0.65 -0.0
371,835 + MPMX19_04915 0.65 -1.6
371,835 + MPMX19_04915 0.65 +0.4
371,836 - MPMX19_04915 0.65 -1.6
371,836 - MPMX19_04915 0.65 -0.6
371,836 - MPMX19_04915 0.65 -2.7
371,836 - MPMX19_04915 0.65 +0.4
371,836 - MPMX19_04915 0.65 -1.1
371,836 - MPMX19_04915 0.65 -0.6
371,836 - MPMX19_04915 0.65 -0.9
371,836 - MPMX19_04915 0.65 +0.9
371,836 - MPMX19_04915 0.65 -0.9
371,836 - MPMX19_04915 0.65 -1.2
371,836 - MPMX19_04915 0.65 -1.3
371,836 - MPMX19_04915 0.65 -0.6
371,836 - MPMX19_04915 0.65 +0.2
371,836 - MPMX19_04915 0.65 +0.5
371,836 - MPMX19_04915 0.65 -0.3
371,836 - MPMX19_04915 0.65 +0.4
371,836 - MPMX19_04915 0.65 +0.7
371,836 - MPMX19_04915 0.65 -1.6
371,836 - MPMX19_04915 0.65 -1.6
371,836 - MPMX19_04915 0.65 -0.1
371,836 - MPMX19_04915 0.65 +0.2
371,836 - MPMX19_04915 0.65 -2.0
371,836 - MPMX19_04915 0.65 -0.6
371,836 - MPMX19_04915 0.65 -0.6
371,836 - MPMX19_04915 0.65 +0.1
371,836 - MPMX19_04915 0.65 -1.9
371,836 - MPMX19_04915 0.65 -0.4
371,836 - MPMX19_04915 0.65 -0.7
371,836 - MPMX19_04915 0.65 +0.1
371,836 - MPMX19_04915 0.65 -0.2
371,866 - MPMX19_04915 0.69 -0.3
371,866 - MPMX19_04915 0.69 -0.5
371,880 + MPMX19_04915 0.70 +0.1
371,880 + MPMX19_04915 0.70 +0.4
371,880 + MPMX19_04915 0.70 -2.2
371,881 - MPMX19_04915 0.70 -0.6
371,881 - MPMX19_04915 0.70 +0.5
371,881 - MPMX19_04915 0.70 +1.0
372,218 + -0.9
372,218 + -1.5

Or see this region's nucleotide sequence