Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04826 and MPMX19_04827 overlap by 4 nucleotides MPMX19_04827 and MPMX19_04828 are separated by 11 nucleotides MPMX19_04828 and MPMX19_04829 are separated by 313 nucleotides MPMX19_04829 and MPMX19_04830 are separated by 45 nucleotides
MPMX19_04826: MPMX19_04826 - hypothetical protein, at 233,555 to 234,616
_04826
MPMX19_04827: MPMX19_04827 - hypothetical protein, at 234,613 to 235,038
_04827
MPMX19_04828: MPMX19_04828 - hypothetical protein, at 235,050 to 236,141
_04828
MPMX19_04829: MPMX19_04829 - Putative HTH-type transcriptional regulator, at 236,455 to 236,925
_04829
MPMX19_04830: MPMX19_04830 - FeS cluster assembly protein SufB, at 236,971 to 238,455
_04830
Position (kb)
235
236
237 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 234.146 kb on + strand, within MPMX19_04826 at 234.146 kb on + strand, within MPMX19_04826 at 234.146 kb on + strand, within MPMX19_04826 at 234.146 kb on + strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.164 kb on - strand, within MPMX19_04826 at 234.634 kb on + strand at 234.635 kb on - strand at 234.934 kb on + strand, within MPMX19_04827 at 234.934 kb on + strand, within MPMX19_04827 at 234.934 kb on + strand, within MPMX19_04827 at 234.934 kb on + strand, within MPMX19_04827 at 234.934 kb on + strand, within MPMX19_04827 at 234.934 kb on + strand, within MPMX19_04827 at 234.934 kb on + strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 235.251 kb on + strand, within MPMX19_04828 at 235.251 kb on + strand, within MPMX19_04828 at 235.251 kb on + strand, within MPMX19_04828 at 235.251 kb on + strand, within MPMX19_04828 at 235.251 kb on + strand, within MPMX19_04828 at 235.251 kb on + strand, within MPMX19_04828 at 235.251 kb on + strand, within MPMX19_04828 at 235.251 kb on + strand, within MPMX19_04828 at 235.252 kb on - strand, within MPMX19_04828 at 235.252 kb on - strand, within MPMX19_04828 at 235.252 kb on - strand, within MPMX19_04828 at 235.252 kb on - strand, within MPMX19_04828 at 235.252 kb on - strand, within MPMX19_04828 at 235.312 kb on - strand, within MPMX19_04828 at 235.312 kb on - strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.581 kb on + strand, within MPMX19_04828 at 235.581 kb on + strand, within MPMX19_04828 at 235.582 kb on - strand, within MPMX19_04828 at 235.582 kb on - strand, within MPMX19_04828 at 235.582 kb on - strand, within MPMX19_04828 at 235.614 kb on + strand, within MPMX19_04828 at 235.615 kb on - strand, within MPMX19_04828 at 235.615 kb on - strand, within MPMX19_04828 at 235.615 kb on - strand, within MPMX19_04828 at 235.615 kb on - strand, within MPMX19_04828 at 235.615 kb on - strand, within MPMX19_04828 at 235.647 kb on + strand, within MPMX19_04828 at 235.647 kb on + strand, within MPMX19_04828 at 235.647 kb on + strand, within MPMX19_04828 at 235.648 kb on - strand, within MPMX19_04828 at 235.648 kb on - strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.942 kb on - strand, within MPMX19_04828 at 235.965 kb on + strand, within MPMX19_04828 at 235.966 kb on - strand, within MPMX19_04828 at 235.966 kb on - strand, within MPMX19_04828 at 236.270 kb on - strand at 236.292 kb on + strand at 236.292 kb on + strand at 236.292 kb on + strand at 236.292 kb on + strand at 236.292 kb on + strand at 236.292 kb on + strand at 236.293 kb on - strand at 236.293 kb on - strand at 236.293 kb on - strand at 236.293 kb on - strand at 236.293 kb on - strand at 236.293 kb on - strand at 236.294 kb on + strand at 236.295 kb on - strand at 236.315 kb on + strand at 236.315 kb on + strand at 236.372 kb on - strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.532 kb on + strand, within MPMX19_04829 at 236.532 kb on + strand, within MPMX19_04829 at 236.693 kb on + strand, within MPMX19_04829
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 234,146 + MPMX19_04826 0.56 -0.7 234,146 + MPMX19_04826 0.56 -0.1 234,146 + MPMX19_04826 0.56 -1.4 234,146 + MPMX19_04826 0.56 -0.4 234,147 - MPMX19_04826 0.56 -0.7 234,147 - MPMX19_04826 0.56 +0.7 234,147 - MPMX19_04826 0.56 +1.3 234,147 - MPMX19_04826 0.56 +0.7 234,147 - MPMX19_04826 0.56 -0.3 234,147 - MPMX19_04826 0.56 -1.8 234,164 - MPMX19_04826 0.57 +1.3 234,634 + -0.5 234,635 - -0.6 234,934 + MPMX19_04827 0.75 -1.3 234,934 + MPMX19_04827 0.75 -0.4 234,934 + MPMX19_04827 0.75 -0.3 234,934 + MPMX19_04827 0.75 +0.2 234,934 + MPMX19_04827 0.75 -0.5 234,934 + MPMX19_04827 0.75 +1.1 234,934 + MPMX19_04827 0.75 -0.1 234,935 - MPMX19_04827 0.76 -1.1 234,935 - MPMX19_04827 0.76 -2.1 234,935 - MPMX19_04827 0.76 -0.5 234,935 - MPMX19_04827 0.76 -0.6 234,935 - MPMX19_04827 0.76 -0.3 234,935 - MPMX19_04827 0.76 +0.2 234,935 - MPMX19_04827 0.76 -1.7 234,935 - MPMX19_04827 0.76 +0.7 234,935 - MPMX19_04827 0.76 +0.1 234,935 - MPMX19_04827 0.76 -1.4 234,935 - MPMX19_04827 0.76 -0.4 235,251 + MPMX19_04828 0.18 -0.1 235,251 + MPMX19_04828 0.18 -1.0 235,251 + MPMX19_04828 0.18 +0.3 235,251 + MPMX19_04828 0.18 -0.1 235,251 + MPMX19_04828 0.18 +1.2 235,251 + MPMX19_04828 0.18 -0.1 235,251 + MPMX19_04828 0.18 -0.6 235,251 + MPMX19_04828 0.18 -0.7 235,252 - MPMX19_04828 0.18 -2.1 235,252 - MPMX19_04828 0.18 -0.5 235,252 - MPMX19_04828 0.18 -0.9 235,252 - MPMX19_04828 0.18 -0.4 235,252 - MPMX19_04828 0.18 -1.4 235,312 - MPMX19_04828 0.24 +1.3 235,312 - MPMX19_04828 0.24 +1.2 235,335 + MPMX19_04828 0.26 -0.5 235,335 + MPMX19_04828 0.26 -1.8 235,335 + MPMX19_04828 0.26 -0.3 235,335 + MPMX19_04828 0.26 -0.3 235,335 + MPMX19_04828 0.26 -1.0 235,335 + MPMX19_04828 0.26 -0.2 235,335 + MPMX19_04828 0.26 -0.5 235,335 + MPMX19_04828 0.26 +1.1 235,335 + MPMX19_04828 0.26 -0.1 235,335 + MPMX19_04828 0.26 -0.1 235,335 + MPMX19_04828 0.26 -1.8 235,336 - MPMX19_04828 0.26 -1.1 235,336 - MPMX19_04828 0.26 +0.8 235,336 - MPMX19_04828 0.26 -1.1 235,336 - MPMX19_04828 0.26 +0.5 235,336 - MPMX19_04828 0.26 -1.8 235,336 - MPMX19_04828 0.26 -0.9 235,336 - MPMX19_04828 0.26 +0.1 235,336 - MPMX19_04828 0.26 +0.7 235,336 - MPMX19_04828 0.26 -1.1 235,336 - MPMX19_04828 0.26 +0.1 235,336 - MPMX19_04828 0.26 -0.9 235,336 - MPMX19_04828 0.26 -0.3 235,336 - MPMX19_04828 0.26 -1.7 235,521 + MPMX19_04828 0.43 -0.5 235,521 + MPMX19_04828 0.43 -1.5 235,521 + MPMX19_04828 0.43 -1.5 235,521 + MPMX19_04828 0.43 -2.0 235,521 + MPMX19_04828 0.43 -1.9 235,521 + MPMX19_04828 0.43 -0.9 235,521 + MPMX19_04828 0.43 +0.5 235,521 + MPMX19_04828 0.43 -1.7 235,521 + MPMX19_04828 0.43 -0.3 235,521 + MPMX19_04828 0.43 -1.3 235,521 + MPMX19_04828 0.43 -0.2 235,521 + MPMX19_04828 0.43 -1.5 235,521 + MPMX19_04828 0.43 +0.8 235,521 + MPMX19_04828 0.43 -0.5 235,522 - MPMX19_04828 0.43 -0.4 235,522 - MPMX19_04828 0.43 -2.1 235,522 - MPMX19_04828 0.43 -0.1 235,522 - MPMX19_04828 0.43 -1.0 235,522 - MPMX19_04828 0.43 -0.5 235,522 - MPMX19_04828 0.43 -0.1 235,522 - MPMX19_04828 0.43 +0.5 235,522 - MPMX19_04828 0.43 +0.7 235,522 - MPMX19_04828 0.43 -1.2 235,581 + MPMX19_04828 0.49 -0.4 235,581 + MPMX19_04828 0.49 -0.1 235,582 - MPMX19_04828 0.49 -1.7 235,582 - MPMX19_04828 0.49 -0.2 235,582 - MPMX19_04828 0.49 -0.8 235,614 + MPMX19_04828 0.52 -0.7 235,615 - MPMX19_04828 0.52 -2.9 235,615 - MPMX19_04828 0.52 -0.3 235,615 - MPMX19_04828 0.52 -0.7 235,615 - MPMX19_04828 0.52 -0.3 235,615 - MPMX19_04828 0.52 -0.5 235,647 + MPMX19_04828 0.55 +0.1 235,647 + MPMX19_04828 0.55 +1.1 235,647 + MPMX19_04828 0.55 -0.4 235,648 - MPMX19_04828 0.55 +0.7 235,648 - MPMX19_04828 0.55 -0.7 235,761 + MPMX19_04828 0.65 -0.2 235,761 + MPMX19_04828 0.65 -0.9 235,761 + MPMX19_04828 0.65 -0.8 235,761 + MPMX19_04828 0.65 -0.2 235,761 + MPMX19_04828 0.65 -0.5 235,761 + MPMX19_04828 0.65 -1.5 235,761 + MPMX19_04828 0.65 -0.5 235,761 + MPMX19_04828 0.65 -0.3 235,761 + MPMX19_04828 0.65 -0.3 235,761 + MPMX19_04828 0.65 -0.3 235,761 + MPMX19_04828 0.65 +0.4 235,761 + MPMX19_04828 0.65 -0.0 235,761 + MPMX19_04828 0.65 -0.3 235,761 + MPMX19_04828 0.65 -0.6 235,761 + MPMX19_04828 0.65 +0.1 235,761 + MPMX19_04828 0.65 -1.5 235,761 + MPMX19_04828 0.65 -1.9 235,761 + MPMX19_04828 0.65 -1.0 235,761 + MPMX19_04828 0.65 -0.7 235,761 + MPMX19_04828 0.65 -1.8 235,761 + MPMX19_04828 0.65 -0.7 235,761 + MPMX19_04828 0.65 -0.4 235,762 - MPMX19_04828 0.65 -0.8 235,762 - MPMX19_04828 0.65 -0.6 235,762 - MPMX19_04828 0.65 -0.7 235,762 - MPMX19_04828 0.65 -0.5 235,762 - MPMX19_04828 0.65 +0.2 235,762 - MPMX19_04828 0.65 +0.1 235,762 - MPMX19_04828 0.65 +0.6 235,762 - MPMX19_04828 0.65 +0.9 235,762 - MPMX19_04828 0.65 -1.2 235,762 - MPMX19_04828 0.65 -1.7 235,762 - MPMX19_04828 0.65 -2.1 235,762 - MPMX19_04828 0.65 +0.6 235,762 - MPMX19_04828 0.65 -0.7 235,762 - MPMX19_04828 0.65 -1.2 235,942 - MPMX19_04828 0.82 +0.2 235,965 + MPMX19_04828 0.84 -1.6 235,966 - MPMX19_04828 0.84 +1.2 235,966 - MPMX19_04828 0.84 -1.3 236,270 - -0.9 236,292 + -1.6 236,292 + -0.3 236,292 + -1.1 236,292 + +0.7 236,292 + -0.7 236,292 + -1.3 236,293 - -0.6 236,293 - -1.7 236,293 - -0.1 236,293 - +0.7 236,293 - -1.5 236,293 - -0.9 236,294 + +0.8 236,295 - +0.5 236,315 + +1.3 236,315 + -0.3 236,372 - +0.3 236,482 + -1.1 236,482 + +0.7 236,482 + -0.4 236,482 + -0.3 236,482 + -0.5 236,482 + -0.8 236,482 + -1.0 236,482 + -0.1 236,532 + MPMX19_04829 0.16 +0.7 236,532 + MPMX19_04829 0.16 +0.3 236,693 + MPMX19_04829 0.51 -1.8
Or see this region's nucleotide sequence