Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04507 and MPMX19_04508 overlap by 7 nucleotides MPMX19_04508 and MPMX19_04509 are separated by 12 nucleotides MPMX19_04509 and MPMX19_04510 are separated by 14 nucleotides
MPMX19_04507: MPMX19_04507 - Putative phosphoserine phosphatase 2, at 876,744 to 877,271
_04507
MPMX19_04508: MPMX19_04508 - Phosphoglycolate phosphatase, at 877,265 to 877,957
_04508
MPMX19_04509: MPMX19_04509 - Spermidine/putrescine import ATP-binding protein PotA, at 877,970 to 879,085
_04509
MPMX19_04510: MPMX19_04510 - hypothetical protein, at 879,100 to 880,812
_04510
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 877.347 kb on + strand, within MPMX19_04508 at 877.347 kb on + strand, within MPMX19_04508 at 877.347 kb on + strand, within MPMX19_04508 at 877.347 kb on + strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.503 kb on + strand, within MPMX19_04508 at 877.504 kb on - strand, within MPMX19_04508 at 877.504 kb on - strand, within MPMX19_04508 at 877.653 kb on + strand, within MPMX19_04508 at 877.654 kb on - strand, within MPMX19_04508 at 877.686 kb on + strand, within MPMX19_04508 at 877.686 kb on + strand, within MPMX19_04508 at 877.687 kb on - strand, within MPMX19_04508 at 877.687 kb on - strand, within MPMX19_04508 at 877.687 kb on - strand, within MPMX19_04508 at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.972 kb on - strand at 877.972 kb on - strand at 877.972 kb on - strand at 877.972 kb on - strand at 877.972 kb on - strand at 878.100 kb on + strand, within MPMX19_04509 at 878.101 kb on - strand, within MPMX19_04509 at 878.376 kb on + strand, within MPMX19_04509 at 878.377 kb on - strand, within MPMX19_04509 at 878.377 kb on - strand, within MPMX19_04509 at 878.377 kb on - strand, within MPMX19_04509 at 878.790 kb on + strand, within MPMX19_04509 at 878.790 kb on + strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 879.003 kb on + strand at 879.003 kb on + strand at 879.004 kb on - strand at 879.004 kb on - strand at 879.004 kb on - strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.233 kb on + strand at 879.233 kb on + strand at 879.233 kb on + strand at 879.233 kb on + strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.239 kb on + strand at 879.239 kb on + strand at 879.239 kb on + strand at 879.239 kb on + strand at 879.239 kb on + strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.248 kb on + strand at 879.249 kb on - strand at 879.474 kb on - strand, within MPMX19_04510 at 879.560 kb on + strand, within MPMX19_04510 at 879.560 kb on + strand, within MPMX19_04510 at 879.560 kb on + strand, within MPMX19_04510 at 879.560 kb on + strand, within MPMX19_04510 at 879.561 kb on - strand, within MPMX19_04510 at 879.561 kb on - strand, within MPMX19_04510 at 879.561 kb on - strand, within MPMX19_04510 at 879.575 kb on + strand, within MPMX19_04510 at 879.576 kb on - strand, within MPMX19_04510 at 879.576 kb on - strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.671 kb on + strand, within MPMX19_04510 at 879.672 kb on - strand, within MPMX19_04510 at 879.672 kb on - strand, within MPMX19_04510 at 879.722 kb on + strand, within MPMX19_04510 at 879.722 kb on + strand, within MPMX19_04510 at 879.722 kb on + strand, within MPMX19_04510 at 879.722 kb on + strand, within MPMX19_04510 at 879.723 kb on - strand, within MPMX19_04510 at 879.723 kb on - strand, within MPMX19_04510 at 879.723 kb on - strand, within MPMX19_04510 at 879.723 kb on - strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.773 kb on + strand, within MPMX19_04510 at 879.773 kb on + strand, within MPMX19_04510 at 879.774 kb on - strand, within MPMX19_04510 at 879.774 kb on - strand, within MPMX19_04510 at 879.894 kb on - strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.966 kb on - strand, within MPMX19_04510 at 879.966 kb on - strand, within MPMX19_04510 at 880.043 kb on + strand, within MPMX19_04510 at 880.043 kb on + strand, within MPMX19_04510 at 880.043 kb on + strand, within MPMX19_04510 at 880.043 kb on + strand, within MPMX19_04510 at 880.043 kb on + strand, within MPMX19_04510 at 880.043 kb on + strand, within MPMX19_04510 at 880.043 kb on + strand, within MPMX19_04510 at 880.044 kb on - strand, within MPMX19_04510 at 880.044 kb on - strand, within MPMX19_04510 at 880.044 kb on - strand, within MPMX19_04510 at 880.044 kb on - strand, within MPMX19_04510 at 880.044 kb on - strand, within MPMX19_04510 at 880.044 kb on - strand, within MPMX19_04510 at 880.044 kb on - strand, within MPMX19_04510 at 880.085 kb on + strand, within MPMX19_04510 at 880.085 kb on + strand, within MPMX19_04510 at 880.085 kb on + strand, within MPMX19_04510 at 880.085 kb on + strand, within MPMX19_04510 at 880.085 kb on + strand, within MPMX19_04510
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 877,347 + MPMX19_04508 0.12 -0.9 877,347 + MPMX19_04508 0.12 +1.6 877,347 + MPMX19_04508 0.12 -2.1 877,347 + MPMX19_04508 0.12 +0.6 877,348 - MPMX19_04508 0.12 -2.5 877,348 - MPMX19_04508 0.12 +1.5 877,348 - MPMX19_04508 0.12 +0.6 877,348 - MPMX19_04508 0.12 -0.1 877,503 + MPMX19_04508 0.34 +1.0 877,504 - MPMX19_04508 0.34 +0.6 877,504 - MPMX19_04508 0.34 +0.3 877,653 + MPMX19_04508 0.56 -0.3 877,654 - MPMX19_04508 0.56 +0.6 877,686 + MPMX19_04508 0.61 +0.3 877,686 + MPMX19_04508 0.61 +1.2 877,687 - MPMX19_04508 0.61 +0.3 877,687 - MPMX19_04508 0.61 -0.7 877,687 - MPMX19_04508 0.61 +0.0 877,971 + -0.2 877,971 + +0.6 877,971 + +1.4 877,971 + -1.6 877,971 + +0.8 877,971 + -1.4 877,972 - -1.6 877,972 - +0.6 877,972 - -0.4 877,972 - -0.5 877,972 - +0.8 878,100 + MPMX19_04509 0.12 -0.6 878,101 - MPMX19_04509 0.12 -0.0 878,376 + MPMX19_04509 0.36 -0.0 878,377 - MPMX19_04509 0.36 -0.8 878,377 - MPMX19_04509 0.36 +0.3 878,377 - MPMX19_04509 0.36 +1.0 878,790 + MPMX19_04509 0.73 -0.4 878,790 + MPMX19_04509 0.73 -1.0 878,791 - MPMX19_04509 0.74 +0.0 878,791 - MPMX19_04509 0.74 -1.1 878,791 - MPMX19_04509 0.74 +0.2 878,791 - MPMX19_04509 0.74 -1.6 878,791 - MPMX19_04509 0.74 -1.2 878,791 - MPMX19_04509 0.74 -1.0 879,003 + +0.1 879,003 + +0.6 879,004 - -0.1 879,004 - -0.4 879,004 - -0.7 879,155 + -1.6 879,155 + -1.5 879,155 + -0.4 879,155 + -1.6 879,155 + -1.7 879,155 + +0.3 879,155 + -0.6 879,155 + -2.1 879,156 - -0.1 879,156 - -0.5 879,156 - -0.8 879,156 - -0.7 879,156 - -0.4 879,156 - -1.1 879,156 - -0.4 879,156 - -0.4 879,156 - -0.4 879,156 - -0.6 879,156 - -0.3 879,233 + -0.4 879,233 + +0.7 879,233 + -1.2 879,233 + -0.4 879,234 - +0.6 879,234 - -0.1 879,234 - +0.6 879,234 - -1.4 879,234 - +0.3 879,234 - -2.2 879,234 - -2.4 879,234 - -0.2 879,234 - -2.0 879,239 + -1.2 879,239 + +0.5 879,239 + -1.0 879,239 + -0.8 879,239 + -0.6 879,240 - -0.4 879,240 - +0.0 879,240 - -0.9 879,240 - -0.6 879,240 - -1.4 879,240 - -2.1 879,240 - +0.6 879,240 - +0.0 879,240 - -0.6 879,240 - +0.3 879,240 - -1.0 879,240 - +0.3 879,240 - +0.0 879,248 + -0.1 879,249 - -1.6 879,474 - MPMX19_04510 0.22 -1.2 879,560 + MPMX19_04510 0.27 +0.0 879,560 + MPMX19_04510 0.27 -1.2 879,560 + MPMX19_04510 0.27 -0.7 879,560 + MPMX19_04510 0.27 -0.2 879,561 - MPMX19_04510 0.27 -0.6 879,561 - MPMX19_04510 0.27 -1.6 879,561 - MPMX19_04510 0.27 +1.0 879,575 + MPMX19_04510 0.28 +1.3 879,576 - MPMX19_04510 0.28 +0.9 879,576 - MPMX19_04510 0.28 -1.9 879,626 + MPMX19_04510 0.31 -0.6 879,626 + MPMX19_04510 0.31 +0.1 879,626 + MPMX19_04510 0.31 -0.4 879,626 + MPMX19_04510 0.31 -0.3 879,626 + MPMX19_04510 0.31 -0.0 879,626 + MPMX19_04510 0.31 -0.0 879,626 + MPMX19_04510 0.31 +0.7 879,626 + MPMX19_04510 0.31 -0.2 879,626 + MPMX19_04510 0.31 -1.1 879,626 + MPMX19_04510 0.31 -0.4 879,626 + MPMX19_04510 0.31 +0.2 879,626 + MPMX19_04510 0.31 -0.4 879,626 + MPMX19_04510 0.31 -0.1 879,627 - MPMX19_04510 0.31 +0.3 879,627 - MPMX19_04510 0.31 -2.4 879,627 - MPMX19_04510 0.31 -0.7 879,627 - MPMX19_04510 0.31 -0.5 879,627 - MPMX19_04510 0.31 +1.0 879,627 - MPMX19_04510 0.31 -1.6 879,627 - MPMX19_04510 0.31 -0.9 879,627 - MPMX19_04510 0.31 +0.5 879,671 + MPMX19_04510 0.33 -0.7 879,672 - MPMX19_04510 0.33 -1.3 879,672 - MPMX19_04510 0.33 +0.1 879,722 + MPMX19_04510 0.36 -2.0 879,722 + MPMX19_04510 0.36 -1.1 879,722 + MPMX19_04510 0.36 -2.1 879,722 + MPMX19_04510 0.36 +0.1 879,723 - MPMX19_04510 0.36 -1.0 879,723 - MPMX19_04510 0.36 -0.4 879,723 - MPMX19_04510 0.36 -0.7 879,723 - MPMX19_04510 0.36 -2.4 879,743 + MPMX19_04510 0.38 +0.6 879,743 + MPMX19_04510 0.38 -0.9 879,743 + MPMX19_04510 0.38 -1.4 879,743 + MPMX19_04510 0.38 -0.9 879,743 + MPMX19_04510 0.38 +0.2 879,743 + MPMX19_04510 0.38 +0.3 879,743 + MPMX19_04510 0.38 +0.2 879,743 + MPMX19_04510 0.38 -0.2 879,743 + MPMX19_04510 0.38 -1.4 879,744 - MPMX19_04510 0.38 -1.7 879,744 - MPMX19_04510 0.38 +1.1 879,744 - MPMX19_04510 0.38 -1.0 879,744 - MPMX19_04510 0.38 +0.0 879,744 - MPMX19_04510 0.38 -0.3 879,744 - MPMX19_04510 0.38 -1.2 879,744 - MPMX19_04510 0.38 +0.3 879,744 - MPMX19_04510 0.38 -0.9 879,744 - MPMX19_04510 0.38 -2.5 879,744 - MPMX19_04510 0.38 +0.4 879,744 - MPMX19_04510 0.38 -0.4 879,744 - MPMX19_04510 0.38 -0.6 879,744 - MPMX19_04510 0.38 -2.9 879,773 + MPMX19_04510 0.39 +0.4 879,773 + MPMX19_04510 0.39 -1.2 879,774 - MPMX19_04510 0.39 -1.2 879,774 - MPMX19_04510 0.39 -0.6 879,894 - MPMX19_04510 0.46 +0.9 879,965 + MPMX19_04510 0.50 -0.1 879,965 + MPMX19_04510 0.50 -2.6 879,965 + MPMX19_04510 0.50 -0.7 879,965 + MPMX19_04510 0.50 +0.3 879,965 + MPMX19_04510 0.50 +0.0 879,965 + MPMX19_04510 0.50 +0.7 879,965 + MPMX19_04510 0.50 -0.6 879,965 + MPMX19_04510 0.50 -2.6 879,965 + MPMX19_04510 0.50 -0.8 879,966 - MPMX19_04510 0.51 +1.1 879,966 - MPMX19_04510 0.51 -0.6 880,043 + MPMX19_04510 0.55 -0.2 880,043 + MPMX19_04510 0.55 -1.1 880,043 + MPMX19_04510 0.55 -1.3 880,043 + MPMX19_04510 0.55 +0.2 880,043 + MPMX19_04510 0.55 -1.2 880,043 + MPMX19_04510 0.55 -0.2 880,043 + MPMX19_04510 0.55 +0.3 880,044 - MPMX19_04510 0.55 -0.0 880,044 - MPMX19_04510 0.55 -1.0 880,044 - MPMX19_04510 0.55 +0.5 880,044 - MPMX19_04510 0.55 +0.9 880,044 - MPMX19_04510 0.55 +0.2 880,044 - MPMX19_04510 0.55 +0.0 880,044 - MPMX19_04510 0.55 -1.9 880,085 + MPMX19_04510 0.58 -0.3 880,085 + MPMX19_04510 0.58 +0.2 880,085 + MPMX19_04510 0.58 -1.4 880,085 + MPMX19_04510 0.58 +0.3 880,085 + MPMX19_04510 0.58 -0.2
Or see this region's nucleotide sequence