Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04506 and MPMX19_04507 are separated by 299 nucleotides MPMX19_04507 and MPMX19_04508 overlap by 7 nucleotides MPMX19_04508 and MPMX19_04509 are separated by 12 nucleotides
MPMX19_04506: MPMX19_04506 - Aliphatic amidase expression-regulating protein, at 875,275 to 876,444
_04506
MPMX19_04507: MPMX19_04507 - Putative phosphoserine phosphatase 2, at 876,744 to 877,271
_04507
MPMX19_04508: MPMX19_04508 - Phosphoglycolate phosphatase, at 877,265 to 877,957
_04508
MPMX19_04509: MPMX19_04509 - Spermidine/putrescine import ATP-binding protein PotA, at 877,970 to 879,085
_04509
Position (kb) 877
878 Strain fitness (log2 ratio) -2
-1
0
1 at 876.435 kb on + strand at 876.436 kb on - strand at 876.436 kb on - strand at 876.477 kb on + strand at 876.543 kb on - strand at 876.668 kb on + strand at 876.668 kb on + strand at 876.668 kb on + strand at 876.668 kb on + strand at 876.668 kb on + strand at 876.668 kb on + strand at 876.668 kb on + strand at 876.668 kb on + strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.680 kb on + strand at 876.680 kb on + strand at 876.680 kb on + strand at 876.680 kb on + strand at 876.681 kb on - strand at 876.681 kb on - strand at 876.683 kb on + strand at 876.683 kb on + strand at 876.684 kb on - strand at 876.684 kb on - strand at 876.684 kb on - strand at 877.347 kb on + strand, within MPMX19_04508 at 877.347 kb on + strand, within MPMX19_04508 at 877.347 kb on + strand, within MPMX19_04508 at 877.347 kb on + strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.503 kb on + strand, within MPMX19_04508 at 877.504 kb on - strand, within MPMX19_04508 at 877.504 kb on - strand, within MPMX19_04508 at 877.653 kb on + strand, within MPMX19_04508 at 877.654 kb on - strand, within MPMX19_04508 at 877.686 kb on + strand, within MPMX19_04508 at 877.686 kb on + strand, within MPMX19_04508 at 877.687 kb on - strand, within MPMX19_04508 at 877.687 kb on - strand, within MPMX19_04508 at 877.687 kb on - strand, within MPMX19_04508 at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.972 kb on - strand at 877.972 kb on - strand at 877.972 kb on - strand at 877.972 kb on - strand at 877.972 kb on - strand at 878.100 kb on + strand, within MPMX19_04509 at 878.101 kb on - strand, within MPMX19_04509 at 878.376 kb on + strand, within MPMX19_04509 at 878.377 kb on - strand, within MPMX19_04509 at 878.377 kb on - strand, within MPMX19_04509 at 878.377 kb on - strand, within MPMX19_04509 at 878.790 kb on + strand, within MPMX19_04509 at 878.790 kb on + strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 876,435 + -2.5 876,436 - -0.3 876,436 - -0.4 876,477 + -2.6 876,543 - -1.4 876,668 + -1.4 876,668 + +0.1 876,668 + -0.5 876,668 + -0.2 876,668 + +0.1 876,668 + -0.5 876,668 + -0.6 876,668 + -1.3 876,669 - -0.2 876,669 - +0.7 876,669 - +0.3 876,669 - -0.5 876,669 - -2.2 876,669 - +0.2 876,669 - +0.1 876,669 - +0.3 876,669 - +0.1 876,680 + -1.4 876,680 + -0.9 876,680 + +0.1 876,680 + +0.8 876,681 - -0.3 876,681 - -2.0 876,683 + +0.3 876,683 + +0.3 876,684 - -2.2 876,684 - -1.2 876,684 - +0.5 877,347 + MPMX19_04508 0.12 -0.9 877,347 + MPMX19_04508 0.12 +1.6 877,347 + MPMX19_04508 0.12 -2.1 877,347 + MPMX19_04508 0.12 +0.6 877,348 - MPMX19_04508 0.12 -2.5 877,348 - MPMX19_04508 0.12 +1.5 877,348 - MPMX19_04508 0.12 +0.6 877,348 - MPMX19_04508 0.12 -0.1 877,503 + MPMX19_04508 0.34 +1.0 877,504 - MPMX19_04508 0.34 +0.6 877,504 - MPMX19_04508 0.34 +0.3 877,653 + MPMX19_04508 0.56 -0.3 877,654 - MPMX19_04508 0.56 +0.6 877,686 + MPMX19_04508 0.61 +0.3 877,686 + MPMX19_04508 0.61 +1.2 877,687 - MPMX19_04508 0.61 +0.3 877,687 - MPMX19_04508 0.61 -0.7 877,687 - MPMX19_04508 0.61 +0.0 877,971 + -0.2 877,971 + +0.6 877,971 + +1.4 877,971 + -1.6 877,971 + +0.8 877,971 + -1.4 877,972 - -1.6 877,972 - +0.6 877,972 - -0.4 877,972 - -0.5 877,972 - +0.8 878,100 + MPMX19_04509 0.12 -0.6 878,101 - MPMX19_04509 0.12 -0.0 878,376 + MPMX19_04509 0.36 -0.0 878,377 - MPMX19_04509 0.36 -0.8 878,377 - MPMX19_04509 0.36 +0.3 878,377 - MPMX19_04509 0.36 +1.0 878,790 + MPMX19_04509 0.73 -0.4 878,790 + MPMX19_04509 0.73 -1.0 878,791 - MPMX19_04509 0.74 +0.0 878,791 - MPMX19_04509 0.74 -1.1 878,791 - MPMX19_04509 0.74 +0.2 878,791 - MPMX19_04509 0.74 -1.6 878,791 - MPMX19_04509 0.74 -1.2 878,791 - MPMX19_04509 0.74 -1.0
Or see this region's nucleotide sequence