Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04135 and MPMX19_04136 overlap by 8 nucleotides MPMX19_04136 and MPMX19_04137 are separated by 67 nucleotides
MPMX19_04135: MPMX19_04135 - hypothetical protein, at 446,430 to 448,097
_04135
MPMX19_04136: MPMX19_04136 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 448,090 to 449,142
_04136
MPMX19_04137: MPMX19_04137 - HTH-type transcriptional regulator PgrR, at 449,210 to 450,094
_04137
Position (kb)
448
449
450 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 447.123 kb on + strand, within MPMX19_04135 at 447.123 kb on + strand, within MPMX19_04135 at 447.123 kb on + strand, within MPMX19_04135 at 447.123 kb on + strand, within MPMX19_04135 at 447.124 kb on - strand, within MPMX19_04135 at 447.124 kb on - strand, within MPMX19_04135 at 447.124 kb on - strand, within MPMX19_04135 at 447.124 kb on - strand, within MPMX19_04135 at 447.124 kb on - strand, within MPMX19_04135 at 447.124 kb on - strand, within MPMX19_04135 at 447.124 kb on - strand, within MPMX19_04135 at 447.124 kb on - strand, within MPMX19_04135 at 447.129 kb on + strand, within MPMX19_04135 at 447.129 kb on + strand, within MPMX19_04135 at 447.129 kb on + strand, within MPMX19_04135 at 447.129 kb on + strand, within MPMX19_04135 at 447.129 kb on + strand, within MPMX19_04135 at 447.129 kb on + strand, within MPMX19_04135 at 447.129 kb on + strand, within MPMX19_04135 at 447.129 kb on + strand, within MPMX19_04135 at 447.129 kb on + strand, within MPMX19_04135 at 447.129 kb on + strand, within MPMX19_04135 at 447.129 kb on + strand, within MPMX19_04135 at 447.130 kb on - strand, within MPMX19_04135 at 447.130 kb on - strand, within MPMX19_04135 at 447.130 kb on - strand, within MPMX19_04135 at 447.130 kb on - strand, within MPMX19_04135 at 447.130 kb on - strand, within MPMX19_04135 at 447.130 kb on - strand, within MPMX19_04135 at 447.130 kb on - strand, within MPMX19_04135 at 447.130 kb on - strand, within MPMX19_04135 at 447.130 kb on - strand, within MPMX19_04135 at 447.162 kb on + strand, within MPMX19_04135 at 447.162 kb on + strand, within MPMX19_04135 at 447.162 kb on + strand, within MPMX19_04135 at 447.162 kb on + strand, within MPMX19_04135 at 447.162 kb on + strand, within MPMX19_04135 at 447.163 kb on - strand, within MPMX19_04135 at 447.163 kb on - strand, within MPMX19_04135 at 447.163 kb on - strand, within MPMX19_04135 at 447.163 kb on - strand, within MPMX19_04135 at 447.163 kb on - strand, within MPMX19_04135 at 447.163 kb on - strand, within MPMX19_04135 at 447.255 kb on + strand, within MPMX19_04135 at 447.255 kb on + strand, within MPMX19_04135 at 447.256 kb on - strand, within MPMX19_04135 at 447.256 kb on - strand, within MPMX19_04135 at 447.256 kb on - strand, within MPMX19_04135 at 447.256 kb on - strand, within MPMX19_04135 at 447.543 kb on + strand, within MPMX19_04135 at 447.544 kb on - strand, within MPMX19_04135 at 447.544 kb on - strand, within MPMX19_04135 at 447.544 kb on - strand, within MPMX19_04135 at 447.603 kb on + strand, within MPMX19_04135 at 447.603 kb on + strand, within MPMX19_04135 at 447.603 kb on + strand, within MPMX19_04135 at 447.603 kb on + strand, within MPMX19_04135 at 447.603 kb on + strand, within MPMX19_04135 at 447.604 kb on - strand, within MPMX19_04135 at 447.604 kb on - strand, within MPMX19_04135 at 447.604 kb on - strand, within MPMX19_04135 at 447.604 kb on - strand, within MPMX19_04135 at 447.604 kb on - strand, within MPMX19_04135 at 447.604 kb on - strand, within MPMX19_04135 at 447.604 kb on - strand, within MPMX19_04135 at 447.604 kb on - strand, within MPMX19_04135 at 447.604 kb on - strand, within MPMX19_04135 at 447.604 kb on - strand, within MPMX19_04135 at 447.604 kb on - strand, within MPMX19_04135 at 447.726 kb on + strand, within MPMX19_04135 at 447.726 kb on + strand, within MPMX19_04135 at 447.726 kb on + strand, within MPMX19_04135 at 447.727 kb on - strand, within MPMX19_04135 at 447.727 kb on - strand, within MPMX19_04135 at 447.727 kb on - strand, within MPMX19_04135 at 447.727 kb on - strand, within MPMX19_04135 at 447.727 kb on - strand, within MPMX19_04135 at 447.747 kb on + strand, within MPMX19_04135 at 447.748 kb on - strand, within MPMX19_04135 at 447.921 kb on + strand, within MPMX19_04135 at 447.921 kb on + strand, within MPMX19_04135 at 447.936 kb on + strand at 447.936 kb on + strand at 447.936 kb on + strand at 447.937 kb on - strand at 447.937 kb on - strand at 447.937 kb on - strand at 447.937 kb on - strand at 447.937 kb on - strand at 448.095 kb on + strand at 448.095 kb on + strand at 448.095 kb on + strand at 448.095 kb on + strand at 448.095 kb on + strand at 448.095 kb on + strand at 448.096 kb on - strand at 448.096 kb on - strand at 448.096 kb on - strand at 448.126 kb on + strand at 448.126 kb on + strand at 448.127 kb on - strand at 448.357 kb on + strand, within MPMX19_04136 at 448.357 kb on + strand, within MPMX19_04136 at 448.357 kb on + strand, within MPMX19_04136 at 448.357 kb on + strand, within MPMX19_04136 at 448.358 kb on - strand, within MPMX19_04136 at 448.358 kb on - strand, within MPMX19_04136 at 448.358 kb on - strand, within MPMX19_04136 at 448.358 kb on - strand, within MPMX19_04136 at 448.358 kb on - strand, within MPMX19_04136 at 448.358 kb on - strand, within MPMX19_04136 at 448.399 kb on + strand, within MPMX19_04136 at 448.399 kb on + strand, within MPMX19_04136 at 448.399 kb on + strand, within MPMX19_04136 at 448.400 kb on - strand, within MPMX19_04136 at 448.400 kb on - strand, within MPMX19_04136 at 448.555 kb on + strand, within MPMX19_04136 at 448.555 kb on + strand, within MPMX19_04136 at 448.555 kb on + strand, within MPMX19_04136 at 448.740 kb on + strand, within MPMX19_04136 at 448.741 kb on - strand, within MPMX19_04136 at 448.771 kb on + strand, within MPMX19_04136 at 448.771 kb on + strand, within MPMX19_04136 at 448.771 kb on + strand, within MPMX19_04136 at 448.771 kb on + strand, within MPMX19_04136 at 448.772 kb on - strand, within MPMX19_04136 at 448.772 kb on - strand, within MPMX19_04136 at 448.772 kb on - strand, within MPMX19_04136 at 448.772 kb on - strand, within MPMX19_04136 at 448.772 kb on - strand, within MPMX19_04136 at 448.772 kb on - strand, within MPMX19_04136 at 448.772 kb on - strand, within MPMX19_04136 at 448.772 kb on - strand, within MPMX19_04136 at 448.772 kb on - strand, within MPMX19_04136 at 448.772 kb on - strand, within MPMX19_04136 at 449.017 kb on + strand, within MPMX19_04136 at 449.017 kb on + strand, within MPMX19_04136 at 449.018 kb on - strand, within MPMX19_04136 at 449.018 kb on - strand, within MPMX19_04136 at 449.018 kb on - strand, within MPMX19_04136 at 449.271 kb on + strand at 449.271 kb on + strand at 449.271 kb on + strand at 449.274 kb on + strand at 449.274 kb on + strand at 449.274 kb on + strand at 449.274 kb on + strand at 449.274 kb on + strand at 449.274 kb on + strand at 449.274 kb on + strand at 449.274 kb on + strand at 449.274 kb on + strand at 449.274 kb on + strand at 449.274 kb on + strand at 449.274 kb on + strand at 449.274 kb on + strand at 449.274 kb on + strand at 449.275 kb on - strand at 449.275 kb on - strand at 449.275 kb on - strand at 449.275 kb on - strand at 449.275 kb on - strand at 449.275 kb on - strand at 449.275 kb on - strand at 449.275 kb on - strand at 449.275 kb on - strand at 449.275 kb on - strand at 449.275 kb on - strand at 449.275 kb on - strand at 449.275 kb on - strand at 449.275 kb on - strand at 449.275 kb on - strand at 449.275 kb on - strand at 449.280 kb on + strand at 449.280 kb on + strand at 449.280 kb on + strand at 449.280 kb on + strand at 449.280 kb on + strand at 449.281 kb on - strand at 449.281 kb on - strand at 449.281 kb on - strand at 449.281 kb on - strand at 449.281 kb on - strand at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.370 kb on + strand, within MPMX19_04137 at 449.371 kb on - strand, within MPMX19_04137 at 449.371 kb on - strand, within MPMX19_04137 at 449.371 kb on - strand, within MPMX19_04137 at 449.371 kb on - strand, within MPMX19_04137 at 449.371 kb on - strand, within MPMX19_04137 at 449.371 kb on - strand, within MPMX19_04137 at 449.371 kb on - strand, within MPMX19_04137 at 449.371 kb on - strand, within MPMX19_04137 at 449.371 kb on - strand, within MPMX19_04137 at 449.371 kb on - strand, within MPMX19_04137 at 449.371 kb on - strand, within MPMX19_04137 at 449.371 kb on - strand, within MPMX19_04137 at 449.487 kb on + strand, within MPMX19_04137 at 449.487 kb on + strand, within MPMX19_04137 at 449.487 kb on + strand, within MPMX19_04137 at 449.487 kb on + strand, within MPMX19_04137 at 449.487 kb on + strand, within MPMX19_04137 at 449.488 kb on - strand, within MPMX19_04137 at 449.488 kb on - strand, within MPMX19_04137 at 449.488 kb on - strand, within MPMX19_04137 at 449.488 kb on - strand, within MPMX19_04137 at 449.488 kb on - strand, within MPMX19_04137 at 449.488 kb on - strand, within MPMX19_04137 at 449.505 kb on + strand, within MPMX19_04137 at 449.506 kb on - strand, within MPMX19_04137 at 449.506 kb on - strand, within MPMX19_04137 at 449.506 kb on - strand, within MPMX19_04137 at 449.812 kb on + strand, within MPMX19_04137 at 450.095 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 447,123 + MPMX19_04135 0.42 +0.0 447,123 + MPMX19_04135 0.42 -0.2 447,123 + MPMX19_04135 0.42 -0.2 447,123 + MPMX19_04135 0.42 +0.4 447,124 - MPMX19_04135 0.42 +0.0 447,124 - MPMX19_04135 0.42 -1.0 447,124 - MPMX19_04135 0.42 +1.2 447,124 - MPMX19_04135 0.42 -1.2 447,124 - MPMX19_04135 0.42 +0.9 447,124 - MPMX19_04135 0.42 -1.4 447,124 - MPMX19_04135 0.42 -0.8 447,124 - MPMX19_04135 0.42 -0.2 447,129 + MPMX19_04135 0.42 +0.3 447,129 + MPMX19_04135 0.42 -0.5 447,129 + MPMX19_04135 0.42 -0.4 447,129 + MPMX19_04135 0.42 +0.5 447,129 + MPMX19_04135 0.42 -0.6 447,129 + MPMX19_04135 0.42 -0.1 447,129 + MPMX19_04135 0.42 +1.0 447,129 + MPMX19_04135 0.42 +1.3 447,129 + MPMX19_04135 0.42 +0.9 447,129 + MPMX19_04135 0.42 -0.4 447,129 + MPMX19_04135 0.42 -0.6 447,130 - MPMX19_04135 0.42 -0.1 447,130 - MPMX19_04135 0.42 -1.5 447,130 - MPMX19_04135 0.42 +1.3 447,130 - MPMX19_04135 0.42 -0.7 447,130 - MPMX19_04135 0.42 -1.2 447,130 - MPMX19_04135 0.42 +0.5 447,130 - MPMX19_04135 0.42 +0.6 447,130 - MPMX19_04135 0.42 -0.7 447,130 - MPMX19_04135 0.42 -1.5 447,162 + MPMX19_04135 0.44 -2.5 447,162 + MPMX19_04135 0.44 -1.0 447,162 + MPMX19_04135 0.44 -0.5 447,162 + MPMX19_04135 0.44 -0.7 447,162 + MPMX19_04135 0.44 -0.7 447,163 - MPMX19_04135 0.44 +0.0 447,163 - MPMX19_04135 0.44 +1.6 447,163 - MPMX19_04135 0.44 -0.4 447,163 - MPMX19_04135 0.44 -0.9 447,163 - MPMX19_04135 0.44 -0.4 447,163 - MPMX19_04135 0.44 -0.5 447,255 + MPMX19_04135 0.49 -0.5 447,255 + MPMX19_04135 0.49 +1.9 447,256 - MPMX19_04135 0.50 -1.0 447,256 - MPMX19_04135 0.50 -0.7 447,256 - MPMX19_04135 0.50 +1.2 447,256 - MPMX19_04135 0.50 -0.7 447,543 + MPMX19_04135 0.67 -0.9 447,544 - MPMX19_04135 0.67 -1.0 447,544 - MPMX19_04135 0.67 -1.2 447,544 - MPMX19_04135 0.67 +0.0 447,603 + MPMX19_04135 0.70 -0.8 447,603 + MPMX19_04135 0.70 -0.2 447,603 + MPMX19_04135 0.70 -1.7 447,603 + MPMX19_04135 0.70 -1.0 447,603 + MPMX19_04135 0.70 -1.5 447,604 - MPMX19_04135 0.70 +0.6 447,604 - MPMX19_04135 0.70 +0.5 447,604 - MPMX19_04135 0.70 +0.5 447,604 - MPMX19_04135 0.70 +0.6 447,604 - MPMX19_04135 0.70 -0.8 447,604 - MPMX19_04135 0.70 +0.6 447,604 - MPMX19_04135 0.70 +0.6 447,604 - MPMX19_04135 0.70 -0.4 447,604 - MPMX19_04135 0.70 -0.2 447,604 - MPMX19_04135 0.70 -0.5 447,604 - MPMX19_04135 0.70 -0.1 447,726 + MPMX19_04135 0.78 -0.6 447,726 + MPMX19_04135 0.78 -1.8 447,726 + MPMX19_04135 0.78 +0.9 447,727 - MPMX19_04135 0.78 -1.2 447,727 - MPMX19_04135 0.78 -2.2 447,727 - MPMX19_04135 0.78 -1.5 447,727 - MPMX19_04135 0.78 -1.0 447,727 - MPMX19_04135 0.78 +1.0 447,747 + MPMX19_04135 0.79 +0.6 447,748 - MPMX19_04135 0.79 -0.2 447,921 + MPMX19_04135 0.89 -2.5 447,921 + MPMX19_04135 0.89 -1.4 447,936 + -0.1 447,936 + -0.4 447,936 + +0.2 447,937 - +0.9 447,937 - +0.3 447,937 - -0.5 447,937 - -0.2 447,937 - +0.1 448,095 + -1.0 448,095 + -1.1 448,095 + -1.4 448,095 + -0.5 448,095 + -0.7 448,095 + +1.2 448,096 - +0.1 448,096 - -0.9 448,096 - -0.5 448,126 + +1.4 448,126 + -1.0 448,127 - -1.4 448,357 + MPMX19_04136 0.25 -0.5 448,357 + MPMX19_04136 0.25 -1.8 448,357 + MPMX19_04136 0.25 +0.5 448,357 + MPMX19_04136 0.25 -0.8 448,358 - MPMX19_04136 0.25 +0.4 448,358 - MPMX19_04136 0.25 -1.1 448,358 - MPMX19_04136 0.25 -0.6 448,358 - MPMX19_04136 0.25 +1.0 448,358 - MPMX19_04136 0.25 -1.0 448,358 - MPMX19_04136 0.25 +1.0 448,399 + MPMX19_04136 0.29 +0.1 448,399 + MPMX19_04136 0.29 +0.2 448,399 + MPMX19_04136 0.29 -0.1 448,400 - MPMX19_04136 0.29 +1.4 448,400 - MPMX19_04136 0.29 -0.7 448,555 + MPMX19_04136 0.44 +0.8 448,555 + MPMX19_04136 0.44 -0.2 448,555 + MPMX19_04136 0.44 -1.3 448,740 + MPMX19_04136 0.62 +0.0 448,741 - MPMX19_04136 0.62 -1.7 448,771 + MPMX19_04136 0.65 -0.7 448,771 + MPMX19_04136 0.65 -0.1 448,771 + MPMX19_04136 0.65 +0.0 448,771 + MPMX19_04136 0.65 -0.5 448,772 - MPMX19_04136 0.65 +0.3 448,772 - MPMX19_04136 0.65 +0.8 448,772 - MPMX19_04136 0.65 -1.0 448,772 - MPMX19_04136 0.65 +0.2 448,772 - MPMX19_04136 0.65 +0.2 448,772 - MPMX19_04136 0.65 +0.5 448,772 - MPMX19_04136 0.65 +0.6 448,772 - MPMX19_04136 0.65 +0.9 448,772 - MPMX19_04136 0.65 +0.1 448,772 - MPMX19_04136 0.65 +1.4 449,017 + MPMX19_04136 0.88 -1.0 449,017 + MPMX19_04136 0.88 -0.1 449,018 - MPMX19_04136 0.88 +0.6 449,018 - MPMX19_04136 0.88 +0.7 449,018 - MPMX19_04136 0.88 +0.6 449,271 + +1.0 449,271 + -0.7 449,271 + +0.4 449,274 + -0.3 449,274 + -1.9 449,274 + +1.4 449,274 + -1.5 449,274 + -0.7 449,274 + -0.7 449,274 + +0.5 449,274 + -1.0 449,274 + +0.8 449,274 + -0.4 449,274 + +1.6 449,274 + -1.1 449,274 + +1.2 449,274 + -0.8 449,275 - -0.6 449,275 - -0.7 449,275 - -1.0 449,275 - -0.1 449,275 - -0.4 449,275 - -0.8 449,275 - -0.4 449,275 - +0.4 449,275 - -0.2 449,275 - -0.8 449,275 - -1.4 449,275 - +1.0 449,275 - +0.6 449,275 - +1.0 449,275 - -0.1 449,275 - -0.1 449,280 + -2.1 449,280 + -1.4 449,280 + -1.0 449,280 + +1.6 449,280 + -1.1 449,281 - +0.3 449,281 - +2.6 449,281 - +0.2 449,281 - +0.0 449,281 - +1.4 449,370 + MPMX19_04137 0.18 +0.9 449,370 + MPMX19_04137 0.18 -0.4 449,370 + MPMX19_04137 0.18 -0.7 449,370 + MPMX19_04137 0.18 +0.0 449,370 + MPMX19_04137 0.18 -0.6 449,370 + MPMX19_04137 0.18 +1.0 449,370 + MPMX19_04137 0.18 -0.1 449,370 + MPMX19_04137 0.18 +1.2 449,370 + MPMX19_04137 0.18 -1.2 449,370 + MPMX19_04137 0.18 -0.0 449,370 + MPMX19_04137 0.18 -0.4 449,370 + MPMX19_04137 0.18 -0.3 449,370 + MPMX19_04137 0.18 +0.3 449,370 + MPMX19_04137 0.18 +0.5 449,370 + MPMX19_04137 0.18 +0.5 449,370 + MPMX19_04137 0.18 +0.2 449,370 + MPMX19_04137 0.18 +0.6 449,370 + MPMX19_04137 0.18 -0.8 449,371 - MPMX19_04137 0.18 +0.3 449,371 - MPMX19_04137 0.18 -0.7 449,371 - MPMX19_04137 0.18 -1.2 449,371 - MPMX19_04137 0.18 +0.0 449,371 - MPMX19_04137 0.18 -0.4 449,371 - MPMX19_04137 0.18 +0.3 449,371 - MPMX19_04137 0.18 -1.8 449,371 - MPMX19_04137 0.18 -0.2 449,371 - MPMX19_04137 0.18 +0.6 449,371 - MPMX19_04137 0.18 +0.2 449,371 - MPMX19_04137 0.18 -0.6 449,371 - MPMX19_04137 0.18 -0.8 449,487 + MPMX19_04137 0.31 -2.0 449,487 + MPMX19_04137 0.31 -0.8 449,487 + MPMX19_04137 0.31 -0.1 449,487 + MPMX19_04137 0.31 -0.2 449,487 + MPMX19_04137 0.31 -0.6 449,488 - MPMX19_04137 0.31 -0.0 449,488 - MPMX19_04137 0.31 -0.7 449,488 - MPMX19_04137 0.31 +0.8 449,488 - MPMX19_04137 0.31 -1.3 449,488 - MPMX19_04137 0.31 -1.4 449,488 - MPMX19_04137 0.31 -0.7 449,505 + MPMX19_04137 0.33 -1.0 449,506 - MPMX19_04137 0.33 +0.9 449,506 - MPMX19_04137 0.33 +0.1 449,506 - MPMX19_04137 0.33 +0.5 449,812 + MPMX19_04137 0.68 +2.2 450,095 + +0.5
Or see this region's nucleotide sequence