Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03574 and MPMX19_03575 are separated by 12 nucleotides MPMX19_03575 and MPMX19_03576 are separated by 153 nucleotides
MPMX19_03574: MPMX19_03574 - Aurachin B dehydrogenase, at 995,399 to 996,286
_03574
MPMX19_03575: MPMX19_03575 - HTH-type transcriptional regulator NimR, at 996,299 to 997,075
_03575
MPMX19_03576: MPMX19_03576 - Fosmidomycin resistance protein, at 997,229 to 998,425
_03576
Position (kb) 996
997
998 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 995.316 kb on + strand at 995.317 kb on - strand at 995.318 kb on + strand at 995.318 kb on + strand at 995.321 kb on + strand at 995.322 kb on - strand at 995.349 kb on - strand at 995.404 kb on + strand at 995.404 kb on + strand at 995.404 kb on + strand at 995.404 kb on + strand at 995.404 kb on + strand at 995.404 kb on + strand at 995.404 kb on + strand at 995.405 kb on - strand at 995.405 kb on - strand at 995.405 kb on - strand at 995.405 kb on - strand at 995.405 kb on - strand at 995.405 kb on - strand at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.949 kb on - strand, within MPMX19_03574 at 995.949 kb on - strand, within MPMX19_03574 at 995.949 kb on - strand, within MPMX19_03574 at 995.949 kb on - strand, within MPMX19_03574 at 995.951 kb on - strand, within MPMX19_03574 at 996.008 kb on + strand, within MPMX19_03574 at 996.318 kb on + strand at 996.381 kb on + strand, within MPMX19_03575 at 996.382 kb on - strand, within MPMX19_03575 at 996.382 kb on - strand, within MPMX19_03575 at 996.382 kb on - strand, within MPMX19_03575 at 996.663 kb on + strand, within MPMX19_03575 at 996.708 kb on + strand, within MPMX19_03575 at 996.709 kb on - strand, within MPMX19_03575 at 996.709 kb on - strand, within MPMX19_03575 at 996.709 kb on - strand, within MPMX19_03575 at 996.709 kb on - strand, within MPMX19_03575 at 996.709 kb on - strand, within MPMX19_03575 at 997.005 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.134 kb on - strand at 997.134 kb on - strand at 997.134 kb on - strand at 997.134 kb on - strand at 997.134 kb on - strand at 997.139 kb on + strand at 997.140 kb on - strand at 997.140 kb on - strand at 997.140 kb on - strand at 997.140 kb on - strand at 997.140 kb on - strand at 997.237 kb on + strand at 997.237 kb on + strand at 997.346 kb on + strand at 997.409 kb on + strand, within MPMX19_03576 at 997.409 kb on + strand, within MPMX19_03576 at 997.409 kb on + strand, within MPMX19_03576 at 997.409 kb on + strand, within MPMX19_03576 at 997.410 kb on - strand, within MPMX19_03576 at 997.475 kb on + strand, within MPMX19_03576 at 997.475 kb on + strand, within MPMX19_03576 at 997.476 kb on - strand, within MPMX19_03576 at 997.476 kb on - strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.931 kb on + strand, within MPMX19_03576 at 997.931 kb on + strand, within MPMX19_03576 at 997.932 kb on - strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.964 kb on + strand, within MPMX19_03576 at 997.964 kb on + strand, within MPMX19_03576 at 997.964 kb on + strand, within MPMX19_03576 at 997.965 kb on - strand, within MPMX19_03576
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 995,316 + -1.1 995,317 - -0.5 995,318 + -0.9 995,318 + +1.0 995,321 + -2.5 995,322 - -0.3 995,349 - -0.3 995,404 + -1.8 995,404 + -1.8 995,404 + +1.7 995,404 + +0.7 995,404 + +0.1 995,404 + -3.3 995,404 + +0.1 995,405 - -2.9 995,405 - +0.7 995,405 - +0.2 995,405 - +1.7 995,405 - -0.3 995,405 - -2.0 995,948 + MPMX19_03574 0.62 +0.1 995,948 + MPMX19_03574 0.62 -1.2 995,948 + MPMX19_03574 0.62 -0.4 995,948 + MPMX19_03574 0.62 -0.3 995,948 + MPMX19_03574 0.62 -0.3 995,948 + MPMX19_03574 0.62 +0.6 995,948 + MPMX19_03574 0.62 +0.4 995,948 + MPMX19_03574 0.62 +1.0 995,948 + MPMX19_03574 0.62 -1.2 995,949 - MPMX19_03574 0.62 -1.1 995,949 - MPMX19_03574 0.62 +0.7 995,949 - MPMX19_03574 0.62 +1.1 995,949 - MPMX19_03574 0.62 -1.5 995,951 - MPMX19_03574 0.62 -0.7 996,008 + MPMX19_03574 0.69 +0.2 996,318 + -0.3 996,381 + MPMX19_03575 0.11 -0.8 996,382 - MPMX19_03575 0.11 -2.3 996,382 - MPMX19_03575 0.11 -0.2 996,382 - MPMX19_03575 0.11 -1.5 996,663 + MPMX19_03575 0.47 -0.0 996,708 + MPMX19_03575 0.53 -1.2 996,709 - MPMX19_03575 0.53 -0.9 996,709 - MPMX19_03575 0.53 -1.2 996,709 - MPMX19_03575 0.53 -0.7 996,709 - MPMX19_03575 0.53 -0.3 996,709 - MPMX19_03575 0.53 -1.5 997,005 + +0.5 997,133 + -0.1 997,133 + -0.7 997,133 + -0.3 997,133 + -1.3 997,133 + +0.2 997,133 + +0.2 997,133 + -0.4 997,133 + -0.2 997,133 + +0.7 997,134 - -0.7 997,134 - -1.2 997,134 - -0.6 997,134 - +0.1 997,134 - -1.3 997,139 + -1.9 997,140 - +0.2 997,140 - -1.7 997,140 - +0.8 997,140 - -0.8 997,140 - -0.6 997,237 + -0.2 997,237 + +0.7 997,346 + -0.5 997,409 + MPMX19_03576 0.15 +0.4 997,409 + MPMX19_03576 0.15 -1.8 997,409 + MPMX19_03576 0.15 -1.4 997,409 + MPMX19_03576 0.15 -0.8 997,410 - MPMX19_03576 0.15 -1.9 997,475 + MPMX19_03576 0.21 +0.4 997,475 + MPMX19_03576 0.21 +1.4 997,476 - MPMX19_03576 0.21 -0.8 997,476 - MPMX19_03576 0.21 +1.7 997,925 + MPMX19_03576 0.58 +0.7 997,925 + MPMX19_03576 0.58 -0.2 997,925 + MPMX19_03576 0.58 -0.5 997,925 + MPMX19_03576 0.58 +0.3 997,925 + MPMX19_03576 0.58 +0.2 997,925 + MPMX19_03576 0.58 -1.2 997,925 + MPMX19_03576 0.58 -2.4 997,925 + MPMX19_03576 0.58 -0.8 997,925 + MPMX19_03576 0.58 +0.4 997,926 - MPMX19_03576 0.58 -0.3 997,926 - MPMX19_03576 0.58 +0.1 997,926 - MPMX19_03576 0.58 +0.6 997,926 - MPMX19_03576 0.58 -0.3 997,926 - MPMX19_03576 0.58 +0.8 997,926 - MPMX19_03576 0.58 +0.5 997,926 - MPMX19_03576 0.58 -0.7 997,926 - MPMX19_03576 0.58 +0.1 997,926 - MPMX19_03576 0.58 -1.0 997,931 + MPMX19_03576 0.59 +1.1 997,931 + MPMX19_03576 0.59 -1.2 997,932 - MPMX19_03576 0.59 -1.6 997,952 + MPMX19_03576 0.60 -0.2 997,952 + MPMX19_03576 0.60 -0.0 997,952 + MPMX19_03576 0.60 -0.8 997,952 + MPMX19_03576 0.60 -0.7 997,952 + MPMX19_03576 0.60 +0.7 997,953 - MPMX19_03576 0.60 -0.3 997,953 - MPMX19_03576 0.60 -0.7 997,953 - MPMX19_03576 0.60 -1.0 997,953 - MPMX19_03576 0.60 -1.2 997,953 - MPMX19_03576 0.60 +0.3 997,953 - MPMX19_03576 0.60 +0.1 997,953 - MPMX19_03576 0.60 -0.3 997,955 + MPMX19_03576 0.61 -0.4 997,955 + MPMX19_03576 0.61 +0.1 997,955 + MPMX19_03576 0.61 +0.2 997,955 + MPMX19_03576 0.61 +0.2 997,955 + MPMX19_03576 0.61 +0.2 997,955 + MPMX19_03576 0.61 -0.3 997,955 + MPMX19_03576 0.61 +0.2 997,955 + MPMX19_03576 0.61 -0.2 997,955 + MPMX19_03576 0.61 +1.2 997,955 + MPMX19_03576 0.61 +0.5 997,956 - MPMX19_03576 0.61 -2.0 997,956 - MPMX19_03576 0.61 -2.3 997,956 - MPMX19_03576 0.61 -0.9 997,956 - MPMX19_03576 0.61 +0.4 997,956 - MPMX19_03576 0.61 -0.3 997,956 - MPMX19_03576 0.61 -0.6 997,956 - MPMX19_03576 0.61 -2.2 997,956 - MPMX19_03576 0.61 -1.9 997,956 - MPMX19_03576 0.61 -0.2 997,956 - MPMX19_03576 0.61 +0.1 997,956 - MPMX19_03576 0.61 +0.3 997,956 - MPMX19_03576 0.61 -0.1 997,956 - MPMX19_03576 0.61 -0.7 997,964 + MPMX19_03576 0.61 -0.3 997,964 + MPMX19_03576 0.61 +2.7 997,964 + MPMX19_03576 0.61 +0.1 997,965 - MPMX19_03576 0.61 +0.2
Or see this region's nucleotide sequence