Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03570

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03568 and MPMX19_03569 are separated by 63 nucleotidesMPMX19_03569 and MPMX19_03570 are separated by 182 nucleotidesMPMX19_03570 and MPMX19_03571 are separated by 34 nucleotidesMPMX19_03571 and MPMX19_03572 are separated by 22 nucleotides MPMX19_03568: MPMX19_03568 - 2-methyl-1,2-propanediol dehydrogenase, at 988,979 to 990,550 _03568 MPMX19_03569: MPMX19_03569 - hypothetical protein, at 990,614 to 991,249 _03569 MPMX19_03570: MPMX19_03570 - Phenoxybenzoate dioxygenase subunit beta, at 991,432 to 992,412 _03570 MPMX19_03571: MPMX19_03571 - hypothetical protein, at 992,447 to 992,872 _03571 MPMX19_03572: MPMX19_03572 - Long-chain-fatty-acid--CoA ligase, at 992,895 to 994,412 _03572 Position (kb) 991 992 993Strain fitness (log2 ratio) -2 -1 0 1 2at 990.515 kb on + strandat 990.515 kb on + strandat 990.515 kb on + strandat 990.515 kb on + strandat 990.515 kb on + strandat 990.516 kb on - strandat 990.516 kb on - strandat 990.643 kb on + strandat 990.732 kb on + strand, within MPMX19_03569at 990.732 kb on + strand, within MPMX19_03569at 990.732 kb on + strand, within MPMX19_03569at 990.732 kb on + strand, within MPMX19_03569at 990.733 kb on - strand, within MPMX19_03569at 990.750 kb on + strand, within MPMX19_03569at 990.750 kb on + strand, within MPMX19_03569at 990.751 kb on - strand, within MPMX19_03569at 990.795 kb on + strand, within MPMX19_03569at 990.795 kb on + strand, within MPMX19_03569at 990.795 kb on + strand, within MPMX19_03569at 990.795 kb on + strand, within MPMX19_03569at 990.795 kb on + strand, within MPMX19_03569at 990.796 kb on - strand, within MPMX19_03569at 990.796 kb on - strand, within MPMX19_03569at 990.796 kb on - strand, within MPMX19_03569at 991.440 kb on + strandat 991.440 kb on + strandat 991.440 kb on + strandat 991.441 kb on - strandat 991.624 kb on + strand, within MPMX19_03570at 991.624 kb on + strand, within MPMX19_03570at 991.624 kb on + strand, within MPMX19_03570at 991.789 kb on + strand, within MPMX19_03570at 991.789 kb on + strand, within MPMX19_03570at 991.789 kb on + strand, within MPMX19_03570at 991.789 kb on + strand, within MPMX19_03570at 991.789 kb on + strand, within MPMX19_03570at 991.790 kb on - strand, within MPMX19_03570at 991.790 kb on - strand, within MPMX19_03570at 991.790 kb on - strand, within MPMX19_03570at 991.879 kb on + strand, within MPMX19_03570at 991.879 kb on + strand, within MPMX19_03570at 991.880 kb on - strand, within MPMX19_03570at 991.880 kb on - strand, within MPMX19_03570at 991.880 kb on - strand, within MPMX19_03570at 991.880 kb on - strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.224 kb on + strand, within MPMX19_03570at 992.225 kb on - strand, within MPMX19_03570at 992.651 kb on + strand, within MPMX19_03571at 992.651 kb on + strand, within MPMX19_03571at 992.651 kb on + strand, within MPMX19_03571at 992.651 kb on + strand, within MPMX19_03571at 992.651 kb on + strand, within MPMX19_03571at 992.651 kb on + strand, within MPMX19_03571at 992.651 kb on + strand, within MPMX19_03571at 992.652 kb on - strand, within MPMX19_03571at 992.685 kb on - strand, within MPMX19_03571at 992.873 kb on + strandat 992.873 kb on + strandat 992.873 kb on + strandat 992.873 kb on + strandat 992.874 kb on - strandat 992.874 kb on - strandat 992.874 kb on - strandat 992.874 kb on - strandat 992.874 kb on - strandat 992.874 kb on - strandat 992.874 kb on - strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.945 kb on - strandat 992.945 kb on - strandat 992.945 kb on - strandat 992.945 kb on - strandat 992.945 kb on - strandat 992.945 kb on - strandat 992.977 kb on + strandat 992.977 kb on + strandat 992.977 kb on + strandat 992.978 kb on - strandat 993.172 kb on + strand, within MPMX19_03572at 993.172 kb on + strand, within MPMX19_03572at 993.172 kb on + strand, within MPMX19_03572at 993.172 kb on + strand, within MPMX19_03572at 993.173 kb on - strand, within MPMX19_03572at 993.173 kb on - strand, within MPMX19_03572at 993.173 kb on - strand, within MPMX19_03572at 993.229 kb on + strand, within MPMX19_03572at 993.229 kb on + strand, within MPMX19_03572at 993.229 kb on + strand, within MPMX19_03572at 993.229 kb on + strand, within MPMX19_03572

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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990,515 + -0.6
990,515 + -0.6
990,515 + -0.9
990,515 + -1.7
990,515 + -0.8
990,516 - -1.3
990,516 - -0.2
990,643 + +1.0
990,732 + MPMX19_03569 0.19 -1.3
990,732 + MPMX19_03569 0.19 +0.7
990,732 + MPMX19_03569 0.19 +0.2
990,732 + MPMX19_03569 0.19 +1.0
990,733 - MPMX19_03569 0.19 +0.7
990,750 + MPMX19_03569 0.21 -1.4
990,750 + MPMX19_03569 0.21 -0.6
990,751 - MPMX19_03569 0.22 +0.9
990,795 + MPMX19_03569 0.28 -0.7
990,795 + MPMX19_03569 0.28 -0.9
990,795 + MPMX19_03569 0.28 -0.2
990,795 + MPMX19_03569 0.28 -0.2
990,795 + MPMX19_03569 0.28 -0.2
990,796 - MPMX19_03569 0.29 +0.1
990,796 - MPMX19_03569 0.29 -0.7
990,796 - MPMX19_03569 0.29 -0.9
991,440 + -0.5
991,440 + +0.4
991,440 + +0.3
991,441 - +0.1
991,624 + MPMX19_03570 0.20 -1.1
991,624 + MPMX19_03570 0.20 -0.2
991,624 + MPMX19_03570 0.20 -0.3
991,789 + MPMX19_03570 0.36 -1.3
991,789 + MPMX19_03570 0.36 +0.3
991,789 + MPMX19_03570 0.36 -0.3
991,789 + MPMX19_03570 0.36 +0.3
991,789 + MPMX19_03570 0.36 -0.7
991,790 - MPMX19_03570 0.36 -0.7
991,790 - MPMX19_03570 0.36 -2.2
991,790 - MPMX19_03570 0.36 -2.2
991,879 + MPMX19_03570 0.46 -1.1
991,879 + MPMX19_03570 0.46 -0.6
991,880 - MPMX19_03570 0.46 -0.9
991,880 - MPMX19_03570 0.46 -1.2
991,880 - MPMX19_03570 0.46 -0.5
991,880 - MPMX19_03570 0.46 -1.3
992,026 + MPMX19_03570 0.61 -0.6
992,026 + MPMX19_03570 0.61 -1.0
992,026 + MPMX19_03570 0.61 -1.0
992,026 + MPMX19_03570 0.61 -0.3
992,026 + MPMX19_03570 0.61 -0.4
992,026 + MPMX19_03570 0.61 -1.2
992,027 - MPMX19_03570 0.61 -0.6
992,027 - MPMX19_03570 0.61 -0.3
992,027 - MPMX19_03570 0.61 -0.9
992,027 - MPMX19_03570 0.61 -0.2
992,027 - MPMX19_03570 0.61 -0.5
992,027 - MPMX19_03570 0.61 -1.6
992,027 - MPMX19_03570 0.61 -1.0
992,224 + MPMX19_03570 0.81 -1.3
992,225 - MPMX19_03570 0.81 +1.0
992,651 + MPMX19_03571 0.48 -0.9
992,651 + MPMX19_03571 0.48 +0.7
992,651 + MPMX19_03571 0.48 -0.0
992,651 + MPMX19_03571 0.48 -0.4
992,651 + MPMX19_03571 0.48 -0.9
992,651 + MPMX19_03571 0.48 -0.2
992,651 + MPMX19_03571 0.48 +0.0
992,652 - MPMX19_03571 0.48 -0.0
992,685 - MPMX19_03571 0.56 -0.3
992,873 + -0.3
992,873 + -0.7
992,873 + -0.8
992,873 + +0.3
992,874 - +0.3
992,874 - +0.2
992,874 - +0.7
992,874 - -0.5
992,874 - -0.5
992,874 - -0.9
992,874 - +0.4
992,944 + -0.7
992,944 + -1.1
992,944 + +0.3
992,944 + -1.1
992,944 + -0.3
992,944 + +0.8
992,944 + +0.7
992,944 + -0.1
992,944 + -0.2
992,944 + -0.8
992,944 + -1.5
992,944 + -0.5
992,945 - -0.5
992,945 - -0.0
992,945 - -0.5
992,945 - +2.7
992,945 - +0.7
992,945 - +0.5
992,977 + -0.6
992,977 + -0.3
992,977 + -0.8
992,978 - +0.0
993,172 + MPMX19_03572 0.18 +0.8
993,172 + MPMX19_03572 0.18 -1.1
993,172 + MPMX19_03572 0.18 +0.4
993,172 + MPMX19_03572 0.18 -1.8
993,173 - MPMX19_03572 0.18 +1.1
993,173 - MPMX19_03572 0.18 -2.2
993,173 - MPMX19_03572 0.18 -1.0
993,229 + MPMX19_03572 0.22 -0.2
993,229 + MPMX19_03572 0.22 -0.4
993,229 + MPMX19_03572 0.22 -0.1
993,229 + MPMX19_03572 0.22 -0.8

Or see this region's nucleotide sequence