Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03319 and MPMX19_03320 are separated by 28 nucleotides MPMX19_03320 and MPMX19_03321 are separated by 19 nucleotides
MPMX19_03319: MPMX19_03319 - hypothetical protein, at 667,953 to 669,902
_03319
MPMX19_03320: MPMX19_03320 - hypothetical protein, at 669,931 to 671,307
_03320
MPMX19_03321: MPMX19_03321 - hypothetical protein, at 671,327 to 672,181
_03321
Position (kb) 669
670
671
672 Strain fitness (log2 ratio) -2
-1
0
1 at 668.970 kb on + strand, within MPMX19_03319 at 668.971 kb on - strand, within MPMX19_03319 at 668.971 kb on - strand, within MPMX19_03319 at 669.164 kb on + strand, within MPMX19_03319 at 669.164 kb on + strand, within MPMX19_03319 at 669.164 kb on + strand, within MPMX19_03319 at 669.165 kb on - strand, within MPMX19_03319 at 669.165 kb on - strand, within MPMX19_03319 at 669.165 kb on - strand, within MPMX19_03319 at 669.165 kb on - strand, within MPMX19_03319 at 669.165 kb on - strand, within MPMX19_03319 at 669.356 kb on - strand, within MPMX19_03319 at 669.356 kb on - strand, within MPMX19_03319 at 669.356 kb on - strand, within MPMX19_03319 at 669.356 kb on - strand, within MPMX19_03319 at 669.376 kb on + strand, within MPMX19_03319 at 669.377 kb on - strand, within MPMX19_03319 at 669.377 kb on - strand, within MPMX19_03319 at 669.452 kb on - strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.593 kb on - strand, within MPMX19_03319 at 669.593 kb on - strand, within MPMX19_03319 at 669.593 kb on - strand, within MPMX19_03319 at 669.593 kb on - strand, within MPMX19_03319 at 669.593 kb on - strand, within MPMX19_03319 at 669.604 kb on + strand, within MPMX19_03319 at 669.605 kb on - strand, within MPMX19_03319 at 669.605 kb on - strand, within MPMX19_03319 at 669.605 kb on - strand, within MPMX19_03319 at 669.605 kb on - strand, within MPMX19_03319 at 669.675 kb on - strand, within MPMX19_03319 at 669.675 kb on - strand, within MPMX19_03319 at 669.675 kb on - strand, within MPMX19_03319 at 669.675 kb on - strand, within MPMX19_03319 at 669.701 kb on + strand, within MPMX19_03319 at 669.721 kb on + strand at 669.722 kb on - strand at 669.722 kb on - strand at 669.722 kb on - strand at 669.772 kb on + strand at 669.772 kb on + strand at 669.772 kb on + strand at 669.772 kb on + strand at 669.772 kb on + strand at 669.772 kb on + strand at 669.773 kb on - strand at 669.773 kb on - strand at 669.773 kb on - strand at 669.773 kb on - strand at 670.460 kb on - strand, within MPMX19_03320 at 670.872 kb on + strand, within MPMX19_03320 at 670.872 kb on + strand, within MPMX19_03320 at 670.873 kb on - strand, within MPMX19_03320 at 670.873 kb on - strand, within MPMX19_03320 at 670.873 kb on - strand, within MPMX19_03320 at 670.873 kb on - strand, within MPMX19_03320 at 671.349 kb on + strand at 671.349 kb on + strand at 671.349 kb on + strand at 671.350 kb on - strand at 671.350 kb on - strand at 671.350 kb on - strand at 671.367 kb on + strand at 671.368 kb on - strand at 671.368 kb on - strand at 671.368 kb on - strand at 671.368 kb on - strand at 671.368 kb on - strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.538 kb on + strand, within MPMX19_03321 at 671.538 kb on + strand, within MPMX19_03321 at 671.538 kb on + strand, within MPMX19_03321 at 671.553 kb on + strand, within MPMX19_03321 at 671.553 kb on + strand, within MPMX19_03321 at 671.553 kb on + strand, within MPMX19_03321 at 671.554 kb on - strand, within MPMX19_03321 at 671.554 kb on - strand, within MPMX19_03321 at 671.554 kb on - strand, within MPMX19_03321 at 671.712 kb on - strand, within MPMX19_03321 at 671.740 kb on - strand, within MPMX19_03321 at 671.740 kb on - strand, within MPMX19_03321 at 671.740 kb on - strand, within MPMX19_03321 at 671.740 kb on - strand, within MPMX19_03321 at 671.772 kb on + strand, within MPMX19_03321 at 671.773 kb on - strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 672.090 kb on + strand, within MPMX19_03321 at 672.090 kb on + strand, within MPMX19_03321 at 672.111 kb on + strand at 672.111 kb on + strand at 672.112 kb on - strand at 672.132 kb on + strand at 672.132 kb on + strand at 672.133 kb on - strand at 672.133 kb on - strand at 672.133 kb on - strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.177 kb on + strand at 672.177 kb on + strand at 672.177 kb on + strand at 672.177 kb on + strand at 672.177 kb on + strand at 672.177 kb on + strand at 672.178 kb on - strand at 672.178 kb on - strand at 672.178 kb on - strand at 672.178 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 668,970 + MPMX19_03319 0.52 -0.7 668,971 - MPMX19_03319 0.52 +0.5 668,971 - MPMX19_03319 0.52 +1.3 669,164 + MPMX19_03319 0.62 +1.2 669,164 + MPMX19_03319 0.62 -1.8 669,164 + MPMX19_03319 0.62 -0.9 669,165 - MPMX19_03319 0.62 -1.4 669,165 - MPMX19_03319 0.62 -2.1 669,165 - MPMX19_03319 0.62 -1.1 669,165 - MPMX19_03319 0.62 +0.3 669,165 - MPMX19_03319 0.62 -0.0 669,356 - MPMX19_03319 0.72 +0.1 669,356 - MPMX19_03319 0.72 -1.1 669,356 - MPMX19_03319 0.72 -0.9 669,356 - MPMX19_03319 0.72 -0.4 669,376 + MPMX19_03319 0.73 +1.3 669,377 - MPMX19_03319 0.73 -0.5 669,377 - MPMX19_03319 0.73 -1.4 669,452 - MPMX19_03319 0.77 -0.2 669,592 + MPMX19_03319 0.84 -0.9 669,592 + MPMX19_03319 0.84 -0.7 669,592 + MPMX19_03319 0.84 +1.3 669,592 + MPMX19_03319 0.84 -0.6 669,592 + MPMX19_03319 0.84 -0.4 669,592 + MPMX19_03319 0.84 -0.6 669,593 - MPMX19_03319 0.84 -0.7 669,593 - MPMX19_03319 0.84 +0.8 669,593 - MPMX19_03319 0.84 -0.3 669,593 - MPMX19_03319 0.84 +0.2 669,593 - MPMX19_03319 0.84 -0.9 669,604 + MPMX19_03319 0.85 +0.6 669,605 - MPMX19_03319 0.85 +0.3 669,605 - MPMX19_03319 0.85 -0.1 669,605 - MPMX19_03319 0.85 -0.6 669,605 - MPMX19_03319 0.85 -0.3 669,675 - MPMX19_03319 0.88 +0.6 669,675 - MPMX19_03319 0.88 +0.5 669,675 - MPMX19_03319 0.88 -0.8 669,675 - MPMX19_03319 0.88 -1.1 669,701 + MPMX19_03319 0.90 -0.9 669,721 + -0.4 669,722 - -0.1 669,722 - -0.4 669,722 - -0.2 669,772 + -0.4 669,772 + -0.2 669,772 + -1.3 669,772 + -0.5 669,772 + -0.4 669,772 + -1.4 669,773 - -0.8 669,773 - +0.9 669,773 - -0.1 669,773 - -2.4 670,460 - MPMX19_03320 0.38 -1.9 670,872 + MPMX19_03320 0.68 -0.2 670,872 + MPMX19_03320 0.68 -1.2 670,873 - MPMX19_03320 0.68 -0.1 670,873 - MPMX19_03320 0.68 -2.1 670,873 - MPMX19_03320 0.68 -1.4 670,873 - MPMX19_03320 0.68 -1.1 671,349 + -0.6 671,349 + +0.1 671,349 + -0.7 671,350 - +0.3 671,350 - +1.5 671,350 - -0.6 671,367 + +0.1 671,368 - -1.2 671,368 - +0.2 671,368 - +0.6 671,368 - -0.7 671,368 - -0.1 671,396 + -0.4 671,396 + +0.6 671,396 + -0.6 671,396 + -1.0 671,396 + +0.1 671,396 + +0.3 671,396 + +0.3 671,396 + -0.4 671,396 + -0.2 671,397 - -1.4 671,397 - -0.9 671,397 - -1.1 671,397 - -1.2 671,397 - -1.4 671,397 - -0.7 671,397 - -0.8 671,397 - -0.2 671,397 - -0.7 671,397 - -0.9 671,397 - -0.7 671,397 - +1.3 671,397 - -0.2 671,397 - -1.4 671,397 - +1.5 671,538 + MPMX19_03321 0.25 -2.7 671,538 + MPMX19_03321 0.25 +0.3 671,538 + MPMX19_03321 0.25 -0.7 671,553 + MPMX19_03321 0.26 -1.2 671,553 + MPMX19_03321 0.26 -0.6 671,553 + MPMX19_03321 0.26 -1.3 671,554 - MPMX19_03321 0.27 -1.4 671,554 - MPMX19_03321 0.27 -0.6 671,554 - MPMX19_03321 0.27 +0.2 671,712 - MPMX19_03321 0.45 -0.8 671,740 - MPMX19_03321 0.48 -0.0 671,740 - MPMX19_03321 0.48 -0.4 671,740 - MPMX19_03321 0.48 +0.0 671,740 - MPMX19_03321 0.48 -0.3 671,772 + MPMX19_03321 0.52 -0.7 671,773 - MPMX19_03321 0.52 +0.5 671,784 + MPMX19_03321 0.53 -1.1 671,784 + MPMX19_03321 0.53 -0.4 671,784 + MPMX19_03321 0.53 +1.0 671,784 + MPMX19_03321 0.53 -1.1 671,784 + MPMX19_03321 0.53 -0.4 671,784 + MPMX19_03321 0.53 -1.4 671,784 + MPMX19_03321 0.53 -0.4 671,784 + MPMX19_03321 0.53 -0.1 671,784 + MPMX19_03321 0.53 -0.7 671,785 - MPMX19_03321 0.54 -0.8 671,785 - MPMX19_03321 0.54 -1.7 671,785 - MPMX19_03321 0.54 -0.4 671,785 - MPMX19_03321 0.54 +1.1 671,785 - MPMX19_03321 0.54 -0.1 671,785 - MPMX19_03321 0.54 -0.2 671,785 - MPMX19_03321 0.54 +0.6 671,785 - MPMX19_03321 0.54 -0.3 671,785 - MPMX19_03321 0.54 -0.3 672,090 + MPMX19_03321 0.89 +0.6 672,090 + MPMX19_03321 0.89 -0.6 672,111 + -0.1 672,111 + +0.4 672,112 - -0.1 672,132 + -1.4 672,132 + +0.4 672,133 - -0.6 672,133 - +0.1 672,133 - -0.8 672,135 + +0.8 672,135 + +1.5 672,135 + -0.7 672,135 + +0.4 672,135 + +0.2 672,135 + +0.2 672,135 + -0.7 672,135 + -0.6 672,135 + -0.4 672,136 - -0.2 672,136 - -1.1 672,136 - +0.1 672,136 - -0.2 672,136 - -1.4 672,136 - +0.2 672,177 + +1.0 672,177 + -1.7 672,177 + -0.9 672,177 + -0.4 672,177 + +0.3 672,177 + -1.2 672,178 - -1.4 672,178 - -1.2 672,178 - -0.3 672,178 - -1.5
Or see this region's nucleotide sequence