Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03116 and MPMX19_03117 are separated by 141 nucleotides MPMX19_03117 and MPMX19_03118 are separated by 206 nucleotides MPMX19_03118 and MPMX19_03119 are separated by 103 nucleotides
MPMX19_03116: MPMX19_03116 - Vitamin B12 import ATP-binding protein BtuD, at 401,388 to 402,500
_03116
MPMX19_03117: MPMX19_03117 - Catabolite control protein A, at 402,642 to 403,649
_03117
MPMX19_03118: MPMX19_03118 - hypothetical protein, at 403,856 to 404,062
_03118
MPMX19_03119: MPMX19_03119 - Transcriptional regulatory protein QseB, at 404,166 to 404,876
_03119
Position (kb) 402
403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 401.836 kb on + strand, within MPMX19_03116 at 401.836 kb on + strand, within MPMX19_03116 at 402.209 kb on - strand, within MPMX19_03116 at 402.209 kb on - strand, within MPMX19_03116 at 402.251 kb on - strand, within MPMX19_03116 at 402.251 kb on - strand, within MPMX19_03116 at 402.251 kb on - strand, within MPMX19_03116 at 402.251 kb on - strand, within MPMX19_03116 at 402.251 kb on - strand, within MPMX19_03116 at 402.251 kb on - strand, within MPMX19_03116 at 402.251 kb on - strand, within MPMX19_03116 at 402.463 kb on + strand at 402.463 kb on + strand at 402.463 kb on + strand at 402.463 kb on + strand at 402.463 kb on + strand at 402.463 kb on + strand at 402.464 kb on - strand at 402.464 kb on - strand at 402.464 kb on - strand at 402.475 kb on - strand at 402.475 kb on - strand at 402.575 kb on + strand at 402.575 kb on + strand at 402.575 kb on + strand at 402.576 kb on - strand at 402.576 kb on - strand at 402.576 kb on - strand at 402.576 kb on - strand at 402.633 kb on + strand at 402.633 kb on + strand at 402.979 kb on + strand, within MPMX19_03117 at 402.979 kb on + strand, within MPMX19_03117 at 402.979 kb on + strand, within MPMX19_03117 at 402.979 kb on + strand, within MPMX19_03117 at 402.980 kb on - strand, within MPMX19_03117 at 402.980 kb on - strand, within MPMX19_03117 at 402.980 kb on - strand, within MPMX19_03117 at 402.980 kb on - strand, within MPMX19_03117 at 402.985 kb on + strand, within MPMX19_03117 at 402.985 kb on + strand, within MPMX19_03117 at 402.985 kb on + strand, within MPMX19_03117 at 402.985 kb on + strand, within MPMX19_03117 at 402.986 kb on - strand, within MPMX19_03117 at 402.986 kb on - strand, within MPMX19_03117 at 403.093 kb on + strand, within MPMX19_03117 at 403.294 kb on + strand, within MPMX19_03117 at 403.294 kb on + strand, within MPMX19_03117 at 403.294 kb on + strand, within MPMX19_03117 at 403.295 kb on - strand, within MPMX19_03117 at 403.295 kb on - strand, within MPMX19_03117 at 403.295 kb on - strand, within MPMX19_03117 at 403.295 kb on - strand, within MPMX19_03117 at 403.405 kb on + strand, within MPMX19_03117 at 403.405 kb on + strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.565 kb on + strand at 403.565 kb on + strand at 403.594 kb on - strand at 403.684 kb on + strand at 403.684 kb on + strand at 403.684 kb on + strand at 403.684 kb on + strand at 403.684 kb on + strand at 403.685 kb on - strand at 403.685 kb on - strand at 403.685 kb on - strand at 403.685 kb on - strand at 403.685 kb on - strand at 403.685 kb on - strand at 403.769 kb on + strand at 403.769 kb on + strand at 403.769 kb on + strand at 403.769 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.894 kb on - strand, within MPMX19_03118 at 404.162 kb on + strand at 404.162 kb on + strand at 404.163 kb on - strand at 404.163 kb on - strand at 404.163 kb on - strand at 404.163 kb on - strand at 404.173 kb on + strand at 404.173 kb on + strand at 404.173 kb on + strand at 404.173 kb on + strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.238 kb on + strand, within MPMX19_03119 at 404.239 kb on - strand, within MPMX19_03119 at 404.298 kb on + strand, within MPMX19_03119 at 404.298 kb on + strand, within MPMX19_03119 at 404.298 kb on + strand, within MPMX19_03119 at 404.298 kb on + strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.458 kb on - strand, within MPMX19_03119 at 404.458 kb on - strand, within MPMX19_03119 at 404.458 kb on - strand, within MPMX19_03119 at 404.458 kb on - strand, within MPMX19_03119 at 404.458 kb on - strand, within MPMX19_03119
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 401,836 + MPMX19_03116 0.40 +0.1 401,836 + MPMX19_03116 0.40 -0.7 402,209 - MPMX19_03116 0.74 -0.7 402,209 - MPMX19_03116 0.74 -2.7 402,251 - MPMX19_03116 0.78 +0.8 402,251 - MPMX19_03116 0.78 -0.2 402,251 - MPMX19_03116 0.78 +0.9 402,251 - MPMX19_03116 0.78 -2.6 402,251 - MPMX19_03116 0.78 -0.4 402,251 - MPMX19_03116 0.78 +0.0 402,251 - MPMX19_03116 0.78 -1.8 402,463 + -0.5 402,463 + -0.3 402,463 + -0.8 402,463 + +0.5 402,463 + -0.3 402,463 + -0.4 402,464 - -0.3 402,464 - -0.5 402,464 - -3.0 402,475 - +0.7 402,475 - -0.7 402,575 + +0.1 402,575 + -1.5 402,575 + -1.4 402,576 - -0.8 402,576 - -1.5 402,576 - -0.5 402,576 - -1.9 402,633 + -0.1 402,633 + -0.2 402,979 + MPMX19_03117 0.33 +0.9 402,979 + MPMX19_03117 0.33 -0.1 402,979 + MPMX19_03117 0.33 -0.3 402,979 + MPMX19_03117 0.33 -0.9 402,980 - MPMX19_03117 0.34 -0.8 402,980 - MPMX19_03117 0.34 -1.6 402,980 - MPMX19_03117 0.34 -1.1 402,980 - MPMX19_03117 0.34 -1.0 402,985 + MPMX19_03117 0.34 -2.1 402,985 + MPMX19_03117 0.34 -0.3 402,985 + MPMX19_03117 0.34 -2.0 402,985 + MPMX19_03117 0.34 -0.6 402,986 - MPMX19_03117 0.34 -1.3 402,986 - MPMX19_03117 0.34 -0.6 403,093 + MPMX19_03117 0.45 -0.5 403,294 + MPMX19_03117 0.65 +0.3 403,294 + MPMX19_03117 0.65 -0.3 403,294 + MPMX19_03117 0.65 -2.0 403,295 - MPMX19_03117 0.65 -1.9 403,295 - MPMX19_03117 0.65 -0.6 403,295 - MPMX19_03117 0.65 -1.7 403,295 - MPMX19_03117 0.65 -1.6 403,405 + MPMX19_03117 0.76 -1.1 403,405 + MPMX19_03117 0.76 -0.1 403,406 - MPMX19_03117 0.76 -0.3 403,406 - MPMX19_03117 0.76 -0.2 403,406 - MPMX19_03117 0.76 -1.0 403,406 - MPMX19_03117 0.76 -0.9 403,406 - MPMX19_03117 0.76 -1.0 403,406 - MPMX19_03117 0.76 -1.3 403,406 - MPMX19_03117 0.76 -0.1 403,406 - MPMX19_03117 0.76 -1.0 403,565 + +0.5 403,565 + +0.1 403,594 - -0.7 403,684 + +0.2 403,684 + +0.7 403,684 + -0.8 403,684 + -0.8 403,684 + -0.5 403,685 - -0.1 403,685 - +0.2 403,685 - -0.6 403,685 - -0.7 403,685 - +0.9 403,685 - -1.5 403,769 + +0.1 403,769 + +0.5 403,769 + +0.2 403,769 + -1.1 403,855 + -2.4 403,855 + -0.4 403,855 + -1.7 403,855 + +0.7 403,855 + -0.5 403,855 + -0.3 403,855 + +0.1 403,856 - -0.7 403,856 - -0.0 403,856 - -0.3 403,856 - -0.3 403,856 - -0.3 403,856 - -1.5 403,856 - +0.3 403,856 - -1.7 403,856 - +0.1 403,894 - MPMX19_03118 0.18 +1.4 404,162 + -0.7 404,162 + -2.3 404,163 - +0.2 404,163 - -0.5 404,163 - +0.1 404,163 - -0.1 404,173 + -0.2 404,173 + -1.5 404,173 + +0.1 404,173 + -0.7 404,174 - -0.7 404,174 - -0.4 404,174 - +1.3 404,174 - +0.2 404,174 - -1.3 404,174 - -0.0 404,174 - +0.5 404,174 - -0.5 404,174 - -1.1 404,238 + MPMX19_03119 0.10 -0.1 404,239 - MPMX19_03119 0.10 +0.2 404,298 + MPMX19_03119 0.19 -0.1 404,298 + MPMX19_03119 0.19 -2.3 404,298 + MPMX19_03119 0.19 -0.2 404,298 + MPMX19_03119 0.19 +0.4 404,299 - MPMX19_03119 0.19 -0.1 404,299 - MPMX19_03119 0.19 +0.1 404,299 - MPMX19_03119 0.19 -0.9 404,299 - MPMX19_03119 0.19 +0.1 404,299 - MPMX19_03119 0.19 -0.5 404,299 - MPMX19_03119 0.19 +1.5 404,299 - MPMX19_03119 0.19 +0.9 404,299 - MPMX19_03119 0.19 -0.3 404,299 - MPMX19_03119 0.19 -0.1 404,457 + MPMX19_03119 0.41 -1.5 404,457 + MPMX19_03119 0.41 -0.8 404,457 + MPMX19_03119 0.41 -0.4 404,457 + MPMX19_03119 0.41 -0.8 404,457 + MPMX19_03119 0.41 +0.7 404,457 + MPMX19_03119 0.41 -0.5 404,457 + MPMX19_03119 0.41 +0.9 404,457 + MPMX19_03119 0.41 -1.5 404,457 + MPMX19_03119 0.41 +0.1 404,457 + MPMX19_03119 0.41 -0.1 404,458 - MPMX19_03119 0.41 +1.1 404,458 - MPMX19_03119 0.41 -0.9 404,458 - MPMX19_03119 0.41 -0.1 404,458 - MPMX19_03119 0.41 -1.0 404,458 - MPMX19_03119 0.41 +1.4
Or see this region's nucleotide sequence