Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02973

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02971 and MPMX19_02972 are separated by 43 nucleotidesMPMX19_02972 and MPMX19_02973 are separated by 12 nucleotidesMPMX19_02973 and MPMX19_02974 are separated by 5 nucleotides MPMX19_02971: MPMX19_02971 - Sialic acid TRAP transporter permease protein SiaT, at 233,119 to 235,014 _02971 MPMX19_02972: MPMX19_02972 - hypothetical protein, at 235,058 to 235,597 _02972 MPMX19_02973: MPMX19_02973 - 3-oxo-isoapionate-4-phosphate transcarboxylase/hydrolase, at 235,610 to 236,890 _02973 MPMX19_02974: MPMX19_02974 - 3-oxo-isoapionate kinase, at 236,896 to 238,197 _02974 Position (kb) 235 236 237Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 234.811 kb on + strand, within MPMX19_02971at 234.811 kb on + strand, within MPMX19_02971at 234.812 kb on - strand, within MPMX19_02971at 234.812 kb on - strand, within MPMX19_02971at 234.812 kb on - strand, within MPMX19_02971at 234.874 kb on + strandat 234.878 kb on - strandat 234.878 kb on - strandat 234.937 kb on + strandat 234.938 kb on - strandat 234.938 kb on - strandat 234.938 kb on - strandat 235.013 kb on - strandat 235.042 kb on + strandat 235.043 kb on - strandat 235.095 kb on - strandat 235.127 kb on + strand, within MPMX19_02972at 235.128 kb on - strand, within MPMX19_02972at 235.128 kb on - strand, within MPMX19_02972at 235.128 kb on - strand, within MPMX19_02972at 235.163 kb on + strand, within MPMX19_02972at 235.163 kb on + strand, within MPMX19_02972at 235.164 kb on - strand, within MPMX19_02972at 235.164 kb on - strand, within MPMX19_02972at 235.190 kb on + strand, within MPMX19_02972at 235.190 kb on + strand, within MPMX19_02972at 235.190 kb on + strand, within MPMX19_02972at 235.190 kb on + strand, within MPMX19_02972at 235.190 kb on + strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.197 kb on - strand, within MPMX19_02972at 235.197 kb on - strand, within MPMX19_02972at 235.197 kb on - strand, within MPMX19_02972at 235.197 kb on - strand, within MPMX19_02972at 235.211 kb on + strand, within MPMX19_02972at 235.298 kb on + strand, within MPMX19_02972at 235.298 kb on + strand, within MPMX19_02972at 235.298 kb on + strand, within MPMX19_02972at 235.298 kb on + strand, within MPMX19_02972at 235.299 kb on - strand, within MPMX19_02972at 235.299 kb on - strand, within MPMX19_02972at 235.347 kb on - strand, within MPMX19_02972at 235.361 kb on + strand, within MPMX19_02972at 235.361 kb on + strand, within MPMX19_02972at 235.362 kb on - strand, within MPMX19_02972at 235.362 kb on - strand, within MPMX19_02972at 235.445 kb on + strand, within MPMX19_02972at 235.445 kb on + strand, within MPMX19_02972at 235.445 kb on + strand, within MPMX19_02972at 235.445 kb on + strand, within MPMX19_02972at 235.445 kb on + strand, within MPMX19_02972at 235.446 kb on - strand, within MPMX19_02972at 235.446 kb on - strand, within MPMX19_02972at 235.446 kb on - strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.461 kb on - strand, within MPMX19_02972at 235.461 kb on - strand, within MPMX19_02972at 235.461 kb on - strand, within MPMX19_02972at 235.595 kb on + strandat 235.596 kb on - strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.638 kb on - strandat 235.638 kb on - strandat 235.638 kb on - strandat 235.638 kb on - strandat 235.638 kb on - strandat 235.638 kb on - strandat 235.638 kb on - strandat 235.937 kb on + strand, within MPMX19_02973at 235.937 kb on + strand, within MPMX19_02973at 235.938 kb on - strand, within MPMX19_02973at 235.938 kb on - strand, within MPMX19_02973at 235.995 kb on - strand, within MPMX19_02973at 235.995 kb on - strand, within MPMX19_02973at 236.381 kb on + strand, within MPMX19_02973at 236.382 kb on - strand, within MPMX19_02973at 236.492 kb on + strand, within MPMX19_02973at 236.492 kb on + strand, within MPMX19_02973at 236.493 kb on - strand, within MPMX19_02973at 236.493 kb on - strand, within MPMX19_02973at 236.493 kb on - strand, within MPMX19_02973at 236.775 kb on + strandat 236.775 kb on + strandat 236.776 kb on - strandat 236.776 kb on - strandat 236.776 kb on - strandat 236.776 kb on - strandat 237.154 kb on + strand, within MPMX19_02974at 237.154 kb on + strand, within MPMX19_02974at 237.154 kb on + strand, within MPMX19_02974at 237.154 kb on + strand, within MPMX19_02974at 237.154 kb on + strand, within MPMX19_02974at 237.155 kb on - strand, within MPMX19_02974at 237.155 kb on - strand, within MPMX19_02974at 237.284 kb on - strand, within MPMX19_02974at 237.284 kb on - strand, within MPMX19_02974at 237.457 kb on + strand, within MPMX19_02974at 237.458 kb on - strand, within MPMX19_02974at 237.775 kb on + strand, within MPMX19_02974at 237.776 kb on - strand, within MPMX19_02974at 237.776 kb on - strand, within MPMX19_02974at 237.776 kb on - strand, within MPMX19_02974at 237.776 kb on - strand, within MPMX19_02974

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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234,811 + MPMX19_02971 0.89 -0.7
234,811 + MPMX19_02971 0.89 -1.2
234,812 - MPMX19_02971 0.89 +1.2
234,812 - MPMX19_02971 0.89 -0.4
234,812 - MPMX19_02971 0.89 -0.8
234,874 + -0.9
234,878 - -0.1
234,878 - -0.3
234,937 + +0.4
234,938 - +1.7
234,938 - -0.3
234,938 - -1.4
235,013 - -0.6
235,042 + +0.1
235,043 - -0.1
235,095 - +0.1
235,127 + MPMX19_02972 0.13 +0.8
235,128 - MPMX19_02972 0.13 +0.1
235,128 - MPMX19_02972 0.13 -1.0
235,128 - MPMX19_02972 0.13 -1.1
235,163 + MPMX19_02972 0.19 -0.9
235,163 + MPMX19_02972 0.19 -1.0
235,164 - MPMX19_02972 0.20 -0.2
235,164 - MPMX19_02972 0.20 -0.6
235,190 + MPMX19_02972 0.24 -0.3
235,190 + MPMX19_02972 0.24 -0.1
235,190 + MPMX19_02972 0.24 -2.7
235,190 + MPMX19_02972 0.24 -0.5
235,190 + MPMX19_02972 0.24 -0.3
235,191 - MPMX19_02972 0.25 -0.7
235,191 - MPMX19_02972 0.25 -0.7
235,191 - MPMX19_02972 0.25 -2.5
235,191 - MPMX19_02972 0.25 -1.9
235,191 - MPMX19_02972 0.25 +0.9
235,191 - MPMX19_02972 0.25 -1.1
235,191 - MPMX19_02972 0.25 +0.8
235,191 - MPMX19_02972 0.25 +0.4
235,191 - MPMX19_02972 0.25 -0.4
235,197 - MPMX19_02972 0.26 +2.0
235,197 - MPMX19_02972 0.26 +0.3
235,197 - MPMX19_02972 0.26 -0.6
235,197 - MPMX19_02972 0.26 -0.7
235,211 + MPMX19_02972 0.28 -1.7
235,298 + MPMX19_02972 0.44 +0.2
235,298 + MPMX19_02972 0.44 -3.0
235,298 + MPMX19_02972 0.44 +1.1
235,298 + MPMX19_02972 0.44 +0.3
235,299 - MPMX19_02972 0.45 +0.3
235,299 - MPMX19_02972 0.45 -0.3
235,347 - MPMX19_02972 0.54 -0.7
235,361 + MPMX19_02972 0.56 +0.9
235,361 + MPMX19_02972 0.56 -2.0
235,362 - MPMX19_02972 0.56 -1.0
235,362 - MPMX19_02972 0.56 -1.3
235,445 + MPMX19_02972 0.72 -0.1
235,445 + MPMX19_02972 0.72 -0.7
235,445 + MPMX19_02972 0.72 -1.0
235,445 + MPMX19_02972 0.72 -0.5
235,445 + MPMX19_02972 0.72 -0.3
235,446 - MPMX19_02972 0.72 +0.6
235,446 - MPMX19_02972 0.72 -0.0
235,446 - MPMX19_02972 0.72 -0.6
235,460 + MPMX19_02972 0.74 -1.6
235,460 + MPMX19_02972 0.74 +0.2
235,460 + MPMX19_02972 0.74 +0.4
235,460 + MPMX19_02972 0.74 -1.7
235,460 + MPMX19_02972 0.74 -0.9
235,460 + MPMX19_02972 0.74 +0.3
235,460 + MPMX19_02972 0.74 -0.5
235,460 + MPMX19_02972 0.74 -0.3
235,460 + MPMX19_02972 0.74 -0.8
235,460 + MPMX19_02972 0.74 -1.3
235,460 + MPMX19_02972 0.74 +0.2
235,461 - MPMX19_02972 0.75 -1.3
235,461 - MPMX19_02972 0.75 +0.7
235,461 - MPMX19_02972 0.75 -0.5
235,595 + -0.4
235,596 - -1.1
235,637 + -0.8
235,637 + +0.2
235,637 + -0.2
235,637 + +0.8
235,637 + -1.7
235,637 + -0.3
235,637 + +0.4
235,637 + -0.8
235,637 + -0.8
235,637 + +0.9
235,638 - +0.5
235,638 - -0.5
235,638 - -0.7
235,638 - -2.2
235,638 - -0.2
235,638 - +1.4
235,638 - -0.1
235,937 + MPMX19_02973 0.26 +0.1
235,937 + MPMX19_02973 0.26 -0.4
235,938 - MPMX19_02973 0.26 -0.8
235,938 - MPMX19_02973 0.26 -1.8
235,995 - MPMX19_02973 0.30 -0.6
235,995 - MPMX19_02973 0.30 -0.1
236,381 + MPMX19_02973 0.60 -2.4
236,382 - MPMX19_02973 0.60 -0.7
236,492 + MPMX19_02973 0.69 +0.1
236,492 + MPMX19_02973 0.69 +0.3
236,493 - MPMX19_02973 0.69 -0.7
236,493 - MPMX19_02973 0.69 -1.9
236,493 - MPMX19_02973 0.69 -1.3
236,775 + -1.7
236,775 + -0.0
236,776 - -0.4
236,776 - -1.0
236,776 - +0.0
236,776 - -0.3
237,154 + MPMX19_02974 0.20 +0.4
237,154 + MPMX19_02974 0.20 -0.3
237,154 + MPMX19_02974 0.20 -0.7
237,154 + MPMX19_02974 0.20 +0.1
237,154 + MPMX19_02974 0.20 -1.4
237,155 - MPMX19_02974 0.20 -1.5
237,155 - MPMX19_02974 0.20 -0.5
237,284 - MPMX19_02974 0.30 -0.9
237,284 - MPMX19_02974 0.30 +1.2
237,457 + MPMX19_02974 0.43 -1.1
237,458 - MPMX19_02974 0.43 -0.7
237,775 + MPMX19_02974 0.68 -0.6
237,776 - MPMX19_02974 0.68 -0.9
237,776 - MPMX19_02974 0.68 -0.1
237,776 - MPMX19_02974 0.68 +0.0
237,776 - MPMX19_02974 0.68 +0.7

Or see this region's nucleotide sequence