Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02969

Experiment: NL-CCM; low oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02968 and MPMX19_02969 are separated by 59 nucleotidesMPMX19_02969 and MPMX19_02970 are separated by 142 nucleotides MPMX19_02968: MPMX19_02968 - multidrug efflux RND transporter permease subunit OqxB28, at 227,351 to 230,539 _02968 MPMX19_02969: MPMX19_02969 - HTH-type transcriptional repressor PurR, at 230,599 to 231,687 _02969 MPMX19_02970: MPMX19_02970 - Sialic acid-binding periplasmic protein SiaP, at 231,830 to 232,870 _02970 Position (kb) 230 231 232Strain fitness (log2 ratio) -2 -1 0 1 2at 229.629 kb on - strand, within MPMX19_02968at 229.629 kb on - strand, within MPMX19_02968at 229.629 kb on - strand, within MPMX19_02968at 229.643 kb on + strand, within MPMX19_02968at 229.643 kb on + strand, within MPMX19_02968at 229.644 kb on - strand, within MPMX19_02968at 229.676 kb on + strand, within MPMX19_02968at 229.676 kb on + strand, within MPMX19_02968at 229.677 kb on - strand, within MPMX19_02968at 229.677 kb on - strand, within MPMX19_02968at 229.803 kb on - strand, within MPMX19_02968at 229.826 kb on + strand, within MPMX19_02968at 229.826 kb on + strand, within MPMX19_02968at 229.826 kb on + strand, within MPMX19_02968at 229.826 kb on + strand, within MPMX19_02968at 229.827 kb on - strand, within MPMX19_02968at 229.964 kb on + strand, within MPMX19_02968at 229.964 kb on + strand, within MPMX19_02968at 229.965 kb on - strand, within MPMX19_02968at 229.965 kb on - strand, within MPMX19_02968at 229.965 kb on - strand, within MPMX19_02968at 229.965 kb on - strand, within MPMX19_02968at 229.965 kb on - strand, within MPMX19_02968at 230.048 kb on + strand, within MPMX19_02968at 230.048 kb on + strand, within MPMX19_02968at 230.049 kb on - strand, within MPMX19_02968at 230.049 kb on - strand, within MPMX19_02968at 230.049 kb on - strand, within MPMX19_02968at 230.049 kb on - strand, within MPMX19_02968at 230.447 kb on + strandat 230.447 kb on + strandat 230.447 kb on + strandat 230.447 kb on + strandat 230.447 kb on + strandat 230.447 kb on + strandat 230.447 kb on + strandat 230.447 kb on + strandat 230.447 kb on + strandat 230.448 kb on - strandat 230.448 kb on - strandat 230.448 kb on - strandat 230.448 kb on - strandat 230.448 kb on - strandat 230.448 kb on - strandat 230.448 kb on - strandat 230.888 kb on + strand, within MPMX19_02969at 230.889 kb on - strand, within MPMX19_02969at 230.889 kb on - strand, within MPMX19_02969at 230.889 kb on - strand, within MPMX19_02969at 230.889 kb on - strand, within MPMX19_02969at 230.889 kb on - strand, within MPMX19_02969at 230.939 kb on + strand, within MPMX19_02969at 230.940 kb on - strand, within MPMX19_02969at 230.940 kb on - strand, within MPMX19_02969at 231.050 kb on + strand, within MPMX19_02969at 231.050 kb on + strand, within MPMX19_02969at 231.116 kb on + strand, within MPMX19_02969at 231.117 kb on - strand, within MPMX19_02969at 231.117 kb on - strand, within MPMX19_02969at 231.158 kb on + strand, within MPMX19_02969at 231.158 kb on + strand, within MPMX19_02969at 231.158 kb on + strand, within MPMX19_02969at 231.158 kb on + strand, within MPMX19_02969at 231.158 kb on + strand, within MPMX19_02969at 231.159 kb on - strand, within MPMX19_02969at 231.159 kb on - strand, within MPMX19_02969at 231.485 kb on + strand, within MPMX19_02969at 231.485 kb on + strand, within MPMX19_02969at 231.485 kb on + strand, within MPMX19_02969at 231.485 kb on + strand, within MPMX19_02969at 231.485 kb on + strand, within MPMX19_02969at 231.485 kb on + strand, within MPMX19_02969at 231.486 kb on - strand, within MPMX19_02969at 231.506 kb on + strand, within MPMX19_02969at 231.506 kb on + strand, within MPMX19_02969at 231.506 kb on + strand, within MPMX19_02969at 231.506 kb on + strand, within MPMX19_02969at 231.506 kb on + strand, within MPMX19_02969at 231.506 kb on + strand, within MPMX19_02969at 231.506 kb on + strand, within MPMX19_02969at 231.507 kb on - strand, within MPMX19_02969at 231.507 kb on - strand, within MPMX19_02969at 231.507 kb on - strand, within MPMX19_02969at 231.507 kb on - strand, within MPMX19_02969at 231.507 kb on - strand, within MPMX19_02969at 231.507 kb on - strand, within MPMX19_02969at 231.811 kb on - strandat 231.963 kb on - strand, within MPMX19_02970at 232.030 kb on + strand, within MPMX19_02970at 232.211 kb on + strand, within MPMX19_02970at 232.212 kb on - strand, within MPMX19_02970at 232.286 kb on + strand, within MPMX19_02970at 232.286 kb on + strand, within MPMX19_02970at 232.287 kb on - strand, within MPMX19_02970at 232.287 kb on - strand, within MPMX19_02970at 232.287 kb on - strand, within MPMX19_02970at 232.463 kb on + strand, within MPMX19_02970at 232.463 kb on + strand, within MPMX19_02970at 232.463 kb on + strand, within MPMX19_02970at 232.464 kb on - strand, within MPMX19_02970at 232.464 kb on - strand, within MPMX19_02970at 232.464 kb on - strand, within MPMX19_02970at 232.535 kb on + strand, within MPMX19_02970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
remove
229,629 - MPMX19_02968 0.71 -0.5
229,629 - MPMX19_02968 0.71 -1.0
229,629 - MPMX19_02968 0.71 +2.3
229,643 + MPMX19_02968 0.72 +0.1
229,643 + MPMX19_02968 0.72 -0.2
229,644 - MPMX19_02968 0.72 +0.5
229,676 + MPMX19_02968 0.73 +0.7
229,676 + MPMX19_02968 0.73 -1.6
229,677 - MPMX19_02968 0.73 -2.2
229,677 - MPMX19_02968 0.73 -0.6
229,803 - MPMX19_02968 0.77 -0.2
229,826 + MPMX19_02968 0.78 -0.1
229,826 + MPMX19_02968 0.78 +0.5
229,826 + MPMX19_02968 0.78 +0.9
229,826 + MPMX19_02968 0.78 -0.2
229,827 - MPMX19_02968 0.78 -0.9
229,964 + MPMX19_02968 0.82 -0.8
229,964 + MPMX19_02968 0.82 -0.9
229,965 - MPMX19_02968 0.82 -0.3
229,965 - MPMX19_02968 0.82 -1.6
229,965 - MPMX19_02968 0.82 -1.3
229,965 - MPMX19_02968 0.82 -0.4
229,965 - MPMX19_02968 0.82 -0.1
230,048 + MPMX19_02968 0.85 +0.1
230,048 + MPMX19_02968 0.85 -1.3
230,049 - MPMX19_02968 0.85 -0.7
230,049 - MPMX19_02968 0.85 -0.9
230,049 - MPMX19_02968 0.85 -1.1
230,049 - MPMX19_02968 0.85 -0.9
230,447 + -0.3
230,447 + -0.3
230,447 + -1.9
230,447 + -1.5
230,447 + +0.4
230,447 + -1.5
230,447 + -1.0
230,447 + +0.2
230,447 + -0.9
230,448 - +0.7
230,448 - -0.1
230,448 - +1.7
230,448 - -0.9
230,448 - -0.2
230,448 - +2.0
230,448 - -0.2
230,888 + MPMX19_02969 0.27 -1.7
230,889 - MPMX19_02969 0.27 -0.8
230,889 - MPMX19_02969 0.27 -0.8
230,889 - MPMX19_02969 0.27 +0.3
230,889 - MPMX19_02969 0.27 +0.1
230,889 - MPMX19_02969 0.27 -1.3
230,939 + MPMX19_02969 0.31 -1.2
230,940 - MPMX19_02969 0.31 -0.9
230,940 - MPMX19_02969 0.31 -0.8
231,050 + MPMX19_02969 0.41 -1.7
231,050 + MPMX19_02969 0.41 -1.7
231,116 + MPMX19_02969 0.47 -1.0
231,117 - MPMX19_02969 0.48 -1.1
231,117 - MPMX19_02969 0.48 -0.7
231,158 + MPMX19_02969 0.51 -2.2
231,158 + MPMX19_02969 0.51 -1.8
231,158 + MPMX19_02969 0.51 +0.3
231,158 + MPMX19_02969 0.51 -1.4
231,158 + MPMX19_02969 0.51 +0.1
231,159 - MPMX19_02969 0.51 +0.2
231,159 - MPMX19_02969 0.51 -0.2
231,485 + MPMX19_02969 0.81 +0.3
231,485 + MPMX19_02969 0.81 -0.3
231,485 + MPMX19_02969 0.81 -0.5
231,485 + MPMX19_02969 0.81 -1.8
231,485 + MPMX19_02969 0.81 -0.7
231,485 + MPMX19_02969 0.81 -1.3
231,486 - MPMX19_02969 0.81 +0.7
231,506 + MPMX19_02969 0.83 -0.1
231,506 + MPMX19_02969 0.83 -0.6
231,506 + MPMX19_02969 0.83 -1.0
231,506 + MPMX19_02969 0.83 -0.8
231,506 + MPMX19_02969 0.83 +0.1
231,506 + MPMX19_02969 0.83 +1.1
231,506 + MPMX19_02969 0.83 -0.5
231,507 - MPMX19_02969 0.83 -0.1
231,507 - MPMX19_02969 0.83 -0.9
231,507 - MPMX19_02969 0.83 +0.3
231,507 - MPMX19_02969 0.83 -0.1
231,507 - MPMX19_02969 0.83 -0.3
231,507 - MPMX19_02969 0.83 +0.8
231,811 - -1.9
231,963 - MPMX19_02970 0.13 -0.9
232,030 + MPMX19_02970 0.19 +0.9
232,211 + MPMX19_02970 0.37 +0.8
232,212 - MPMX19_02970 0.37 +0.3
232,286 + MPMX19_02970 0.44 -0.9
232,286 + MPMX19_02970 0.44 -0.2
232,287 - MPMX19_02970 0.44 -0.3
232,287 - MPMX19_02970 0.44 -0.9
232,287 - MPMX19_02970 0.44 -2.1
232,463 + MPMX19_02970 0.61 +0.6
232,463 + MPMX19_02970 0.61 -1.7
232,463 + MPMX19_02970 0.61 -0.5
232,464 - MPMX19_02970 0.61 -1.1
232,464 - MPMX19_02970 0.61 -0.5
232,464 - MPMX19_02970 0.61 -1.3
232,535 + MPMX19_02970 0.68 -0.8

Or see this region's nucleotide sequence