Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02013

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
2,099,985	+				+0.0
2,099,986	-				-0.4
2,099,986	-				+0.2
2,099,986	-				+0.4
2,099,986	-				+0.2
2,100,051	+				-0.2
2,100,051	+				+0.9
2,100,051	+				-1.7
2,100,051	+				+0.3
2,100,051	+				-0.5
2,100,112	+				+0.6
2,100,112	+				-0.5
2,100,113	-				-0.1
2,100,113	-				-0.6
2,100,141	+				-1.0
2,100,158	-				-0.5
2,100,185	-				+0.5
2,100,185	-				-0.4
2,100,185	-				+0.1
2,100,282	+				-0.5
2,100,282	+				-0.5
2,100,283	-				-0.1
2,100,283	-				-1.5
2,100,286	+				+0.2
2,100,286	+				-2.0
2,100,286	+				-0.1
2,100,286	+				-0.8
2,100,286	+				+0.5
2,100,286	+				-1.4
2,100,286	+				-0.7
2,100,286	+				-0.1
2,100,286	+				-0.1
2,100,286	+				-0.8
2,100,287	-				+1.5
2,100,287	-				-0.2
2,100,287	-				-0.1
2,100,287	-				+0.3
2,100,287	-				+0.1
2,100,287	-				+1.5
2,100,291	+				-0.5
2,100,291	+				-1.5
2,100,292	-				-0.5
2,100,292	-				+0.7
2,100,292	-				+1.1
2,100,292	-				-0.1
2,100,292	-				-0.1
2,100,365	+				-0.4
2,100,365	+				+0.1
2,100,365	+				+0.3
2,100,365	+				+0.1
2,100,365	+				+0.5
2,100,365	+				-1.3
2,100,365	+				-0.4
2,100,365	+				-0.5
2,100,365	+				-0.8
2,100,365	+				-2.0
2,100,365	+				-1.3
2,100,365	+				-1.4
2,100,365	+				-1.0
2,100,365	+				-1.1
2,100,365	+				-1.4
2,100,366	-				+1.2
2,100,366	-				-0.3
2,100,366	-				-0.0
2,100,366	-				-1.8
2,100,366	-				-0.3
2,100,366	-				+0.2
2,100,366	-				+0.2
2,100,366	-				+1.8
2,100,366	-				-0.7
2,100,366	-				-0.5
2,100,366	-				-0.4
2,100,366	-				+0.5
2,100,366	-				+0.2
2,100,366	-				-0.4
2,100,366	-				-1.5
2,100,366	-				+0.1
2,100,366	-				+0.1
2,100,366	-				-1.1
2,100,366	-				+1.1
2,100,366	-				-1.1
2,100,366	-				-1.0
2,100,369	+				+0.4
2,100,369	+				-1.1
2,100,369	+				-1.9
2,100,369	+				-1.0
2,100,370	-				+0.2
2,100,515	+		MPMX19_02012	0.33	-1.8
2,100,515	+		MPMX19_02012	0.33	-0.3
2,100,516	-		MPMX19_02012	0.34	-0.5
2,100,698	+		MPMX19_02012	0.68	+0.1
2,100,698	+		MPMX19_02012	0.68	-1.2
2,100,698	+		MPMX19_02012	0.68	+0.8
2,100,698	+		MPMX19_02012	0.68	-2.0
2,100,698	+		MPMX19_02012	0.68	-0.1
2,100,698	+		MPMX19_02012	0.68	+0.0
2,100,698	+		MPMX19_02012	0.68	-2.2
2,100,699	-		MPMX19_02012	0.68	-1.0
2,100,699	-		MPMX19_02012	0.68	-1.3
2,100,699	-		MPMX19_02012	0.68	-0.0
2,100,699	-		MPMX19_02012	0.68	-1.3
2,100,699	-		MPMX19_02012	0.68	+0.9
2,100,699	-		MPMX19_02012	0.68	+0.5
2,100,918	+				+0.4
2,100,918	+				-0.5
2,100,919	-				-0.5
2,100,919	-				-1.8
2,100,919	-				-1.0
2,100,919	-				-0.8
2,100,933	+				+0.1
2,100,933	+				+0.1
2,100,934	-				+0.3
2,100,934	-				-0.1
2,100,934	-				-0.3
2,101,041	+		MPMX19_02013	0.12	-0.5
2,101,041	+		MPMX19_02013	0.12	+0.6
2,101,041	+		MPMX19_02013	0.12	-0.7
2,101,041	+		MPMX19_02013	0.12	+0.1
2,101,041	+		MPMX19_02013	0.12	-0.5
2,101,041	+		MPMX19_02013	0.12	+0.8
2,101,041	+		MPMX19_02013	0.12	-0.3
2,101,041	+		MPMX19_02013	0.12	-0.2
2,101,041	-		MPMX19_02013	0.12	-0.2
2,101,042	-		MPMX19_02013	0.12	+0.9
2,101,042	-		MPMX19_02013	0.12	-0.1
2,101,042	-		MPMX19_02013	0.12	-1.0
2,101,042	-		MPMX19_02013	0.12	+0.1
2,101,042	-		MPMX19_02013	0.12	-0.1
2,101,042	-		MPMX19_02013	0.12	+0.3
2,101,042	-		MPMX19_02013	0.12	+0.5
2,101,042	-		MPMX19_02013	0.12	-0.6
2,101,042	-		MPMX19_02013	0.12	-2.3
2,101,042	-		MPMX19_02013	0.12	-0.2
2,101,042	-		MPMX19_02013	0.12	-1.8
2,101,170	+		MPMX19_02013	0.31	-1.5
2,101,170	+		MPMX19_02013	0.31	-0.3
2,101,170	+		MPMX19_02013	0.31	+0.3
2,101,171	-		MPMX19_02013	0.31	-0.8
2,101,171	-		MPMX19_02013	0.31	+0.3
2,101,171	-		MPMX19_02013	0.31	-0.4
2,101,171	-		MPMX19_02013	0.31	-0.1
2,101,171	-		MPMX19_02013	0.31	+0.0
2,101,171	-		MPMX19_02013	0.31	+0.1
2,101,203	+		MPMX19_02013	0.36	-0.2
2,101,203	+		MPMX19_02013	0.36	+0.4
2,101,203	+		MPMX19_02013	0.36	-0.6
2,101,203	+		MPMX19_02013	0.36	+0.6
2,101,203	+		MPMX19_02013	0.36	+0.2
2,101,203	+		MPMX19_02013	0.36	-0.5
2,101,203	+		MPMX19_02013	0.36	+0.5
2,101,203	+		MPMX19_02013	0.36	+0.3
2,101,203	+		MPMX19_02013	0.36	+2.3
2,101,203	+		MPMX19_02013	0.36	+0.4
2,101,204	-		MPMX19_02013	0.36	+0.4
2,101,204	-		MPMX19_02013	0.36	-0.8
2,101,204	-		MPMX19_02013	0.36	-1.3
2,101,204	-		MPMX19_02013	0.36	+0.2
2,101,204	-		MPMX19_02013	0.36	+1.5
2,101,204	-		MPMX19_02013	0.36	-0.5
2,101,204	-		MPMX19_02013	0.36	-1.7
2,101,204	-		MPMX19_02013	0.36	-1.0
2,101,244	-		MPMX19_02013	0.42	+0.5
2,101,636	+				-0.3
2,101,636	+				+0.2
2,101,636	+				+0.8
2,101,637	-				-2.0
2,101,637	-				+0.4
2,101,637	-				-1.9
2,101,637	-				-0.4
2,101,637	-				-0.5
2,101,637	-				-0.4
2,101,736	+				+0.0
2,101,736	+				-2.5
2,101,736	+				-0.4
2,101,736	+				-0.5
2,101,736	+				-1.0
2,101,736	+				-0.3
2,101,736	+				-0.9
2,101,736	+				-1.0
2,101,736	+				+0.5
2,101,737	-				+0.4
2,101,737	-				+0.8
2,101,737	-				-0.8
2,101,737	-				+0.6
2,101,737	-				-0.8
2,101,737	-				-0.1
2,101,737	-				-0.9
2,101,737	-				+0.3
2,101,737	-				-0.4
2,101,737	-				+0.3
2,101,737	-				-0.3
2,101,737	-				-0.3
2,101,737	-				-1.4
2,101,737	-				+0.3
2,101,737	-				-0.3
2,101,738	+				-0.2
2,101,738	+				+0.9
2,101,738	+				+0.3
2,101,738	+				-0.7
2,101,738	+				-1.0
2,101,738	+				-1.1
2,101,738	+				-0.4
2,101,738	+				-1.1
2,101,738	+				+0.7
2,101,738	+				+0.1
2,101,738	+				-1.2
2,101,738	+				-0.1
2,101,738	+				-0.9
2,101,738	+				+0.2
2,101,738	+				+0.5
2,101,738	+				-1.0
2,101,738	+				-0.9
2,101,738	+				-1.7
2,101,738	+				+0.1
2,101,738	+				+0.8
2,101,738	+				+0.1
2,101,738	+				-2.1
2,101,738	+				-0.5
2,101,738	+				+0.9
2,101,738	+				-0.9
2,101,738	+				+0.4
2,101,738	+				-2.6
2,101,738	+				+0.6
2,101,738	+				-0.0
2,101,738	+				+1.2
2,101,738	+				-0.3
2,101,738	+				-2.5
2,101,739	-				-0.7
2,101,739	-				-1.4
2,101,739	-				-1.1
2,101,739	-				-0.5
2,101,739	-				-0.3
2,101,739	-				-2.3
2,101,739	-				-0.8
2,101,739	-				+1.0
2,101,739	-				+0.6
2,101,739	-				-1.6
2,101,739	-				-1.1
2,101,739	-				-0.8
2,101,739	-				-0.5
2,101,739	-				+0.4
2,101,739	-				+0.8
2,101,739	-				+0.5
2,101,739	-				-0.7
2,101,739	-				-0.4
2,101,739	-				-0.1
2,101,739	-				-1.8
2,101,739	-				-0.9
2,101,739	-				-0.7
2,101,739	-				+0.7
2,101,739	-				-0.0
2,101,739	-				-1.8
2,101,739	-				-0.9
2,101,739	-				-0.8
2,101,739	-				-0.0
2,101,739	-				+0.8
2,101,739	-				+0.0
2,101,739	-				+0.8
2,102,424	+		MPMX19_02014	0.24	-0.4
2,102,424	+		MPMX19_02014	0.24	+0.0
2,102,424	+		MPMX19_02014	0.24	-0.4
2,102,424	+		MPMX19_02014	0.24	+1.9
2,102,425	-		MPMX19_02014	0.24	-1.4
2,102,425	-		MPMX19_02014	0.24	-0.5
2,102,425	-		MPMX19_02014	0.24	-1.3
2,102,425	-		MPMX19_02014	0.24	-0.6
2,102,526	+		MPMX19_02014	0.28	-0.3
2,102,527	-		MPMX19_02014	0.28	-1.1
2,102,527	-		MPMX19_02014	0.28	-0.2
2,102,527	-		MPMX19_02014	0.28	+0.9
2,102,527	-		MPMX19_02014	0.28	+1.5
2,102,527	-		MPMX19_02014	0.28	-0.2
2,102,527	-		MPMX19_02014	0.28	-0.8
2,102,586	+		MPMX19_02014	0.30	-0.5
2,102,586	+		MPMX19_02014	0.30	-0.7
2,102,586	+		MPMX19_02014	0.30	+0.7
2,102,586	+		MPMX19_02014	0.30	+0.0
2,102,586	+		MPMX19_02014	0.30	-2.0
2,102,586	+		MPMX19_02014	0.30	-1.1
2,102,586	+		MPMX19_02014	0.30	+0.0
2,102,586	+		MPMX19_02014	0.30	-0.0
2,102,586	+		MPMX19_02014	0.30	-2.3
2,102,586	+		MPMX19_02014	0.30	+0.0
2,102,586	+		MPMX19_02014	0.30	+0.5
2,102,586	+		MPMX19_02014	0.30	-0.2
2,102,586	+		MPMX19_02014	0.30	-0.4
2,102,586	+		MPMX19_02014	0.30	-0.1
2,102,586	+		MPMX19_02014	0.30	-1.6
2,102,587	-		MPMX19_02014	0.30	-1.1
2,102,587	-		MPMX19_02014	0.30	-0.6
2,102,587	-		MPMX19_02014	0.30	-1.5
2,102,587	-		MPMX19_02014	0.30	-1.1
2,102,587	-		MPMX19_02014	0.30	-1.7
2,102,587	-		MPMX19_02014	0.30	+0.5
2,102,587	-		MPMX19_02014	0.30	+0.1
2,102,587	-		MPMX19_02014	0.30	-0.3
2,102,587	-		MPMX19_02014	0.30	-0.7
2,102,587	-		MPMX19_02014	0.30	+0.5
2,102,587	-		MPMX19_02014	0.30	-0.2
2,102,587	-		MPMX19_02014	0.30	-1.2
2,102,587	-		MPMX19_02014	0.30	-0.2
2,102,587	-		MPMX19_02014	0.30	-0.0
2,102,587	-		MPMX19_02014	0.30	-0.3
2,102,587	-		MPMX19_02014	0.30	+0.5
2,102,587	-		MPMX19_02014	0.30	-0.3
2,102,587	-		MPMX19_02014	0.30	-0.7
2,102,588	+		MPMX19_02014	0.30	-0.8
2,102,589	-		MPMX19_02014	0.30	-1.4
2,102,634	+		MPMX19_02014	0.32	-0.8
2,102,634	+		MPMX19_02014	0.32	-0.9
2,102,635	-		MPMX19_02014	0.32	-0.4
2,102,635	-		MPMX19_02014	0.32	-0.5
2,102,635	-		MPMX19_02014	0.32	-1.4
2,102,635	-		MPMX19_02014	0.32	-0.7
2,102,635	-		MPMX19_02014	0.32	+0.1