Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01498

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
1,569,412	+		MPMX19_01497	0.79	+0.2
1,569,412	+		MPMX19_01497	0.79	-0.7
1,569,412	+		MPMX19_01497	0.79	-1.1
1,569,412	+		MPMX19_01497	0.79	-0.2
1,569,412	+		MPMX19_01497	0.79	-2.0
1,569,412	+		MPMX19_01497	0.79	-1.3
1,569,413	-		MPMX19_01497	0.79	-2.1
1,569,413	-		MPMX19_01497	0.79	-1.0
1,569,413	-		MPMX19_01497	0.79	-0.9
1,569,413	-		MPMX19_01497	0.79	-2.1
1,569,413	-		MPMX19_01497	0.79	-1.2
1,569,413	-		MPMX19_01497	0.79	-0.2
1,569,413	-		MPMX19_01497	0.79	-2.2
1,569,771	+				-2.4
1,569,771	+				-1.1
1,569,771	+				+0.6
1,569,771	+				-1.0
1,569,771	+				-1.8
1,569,771	+				-2.5
1,569,771	+				-0.9
1,569,771	+				-0.8
1,569,772	-				-3.2
1,569,772	-				-0.1
1,569,772	-				-0.8
1,569,772	-				-1.6
1,569,772	-				-2.5
1,569,878	+				-0.3
1,569,878	+				+0.4
1,569,879	-				+0.4
1,569,879	-				-0.8
1,569,938	+				-1.0
1,569,938	+				-0.8
1,569,938	+				-1.8
1,569,938	+				+0.1
1,569,939	-				-2.0
1,569,939	-				-0.4
1,569,939	-				-2.1
1,569,947	+				-0.7
1,569,947	+				-0.7
1,569,947	+				-0.2
1,569,947	+				-1.0
1,569,947	+				-0.3
1,569,948	-				-0.6
1,569,948	-				-0.8
1,569,948	-				-1.8
1,569,948	-				-0.4
1,569,948	-				-0.9
1,569,948	-				-0.8
1,569,948	-				-0.7
1,570,018	+		MPMX19_01498	0.17	-0.9
1,570,018	+		MPMX19_01498	0.17	-1.1
1,570,019	-		MPMX19_01498	0.17	-3.0
1,570,019	-		MPMX19_01498	0.17	-1.1
1,570,019	-		MPMX19_01498	0.17	-0.5
1,570,019	-		MPMX19_01498	0.17	-0.4
1,570,244	+		MPMX19_01498	0.47	+0.2
1,570,244	+		MPMX19_01498	0.47	-2.1
1,570,244	+		MPMX19_01498	0.47	-1.4
1,570,244	+		MPMX19_01498	0.47	-1.1
1,570,244	+		MPMX19_01498	0.47	-0.8
1,570,245	-		MPMX19_01498	0.47	-0.6
1,570,245	-		MPMX19_01498	0.47	+0.2
1,570,245	-		MPMX19_01498	0.47	-0.6
1,570,245	-		MPMX19_01498	0.47	-1.4
1,570,245	-		MPMX19_01498	0.47	-1.9
1,570,245	-		MPMX19_01498	0.47	-1.5
1,570,245	-		MPMX19_01498	0.47	+0.2
1,570,245	-		MPMX19_01498	0.47	-0.2
1,570,245	-		MPMX19_01498	0.47	+0.2
1,570,245	-		MPMX19_01498	0.47	-1.0
1,570,245	-		MPMX19_01498	0.47	+1.1
1,570,245	-		MPMX19_01498	0.47	+0.9
1,570,245	-		MPMX19_01498	0.47	-0.1
1,570,245	-		MPMX19_01498	0.47	-1.1
1,570,286	+		MPMX19_01498	0.52	-1.0
1,570,287	-		MPMX19_01498	0.52	-0.5
1,570,319	+		MPMX19_01498	0.57	-3.0
1,570,319	+		MPMX19_01498	0.57	-0.4
1,570,319	+		MPMX19_01498	0.57	-2.0
1,570,319	+		MPMX19_01498	0.57	-1.4
1,570,319	+		MPMX19_01498	0.57	-1.1
1,570,319	+		MPMX19_01498	0.57	-1.2
1,570,319	+		MPMX19_01498	0.57	-1.3
1,570,320	-		MPMX19_01498	0.57	-0.4
1,570,320	-		MPMX19_01498	0.57	-0.2
1,570,478	+		MPMX19_01498	0.78	-1.2
1,570,478	+		MPMX19_01498	0.78	-1.8
1,570,478	+		MPMX19_01498	0.78	-0.6
1,570,478	+		MPMX19_01498	0.78	+0.4
1,570,478	+		MPMX19_01498	0.78	-0.7
1,570,478	+		MPMX19_01498	0.78	-0.5
1,570,478	+		MPMX19_01498	0.78	-0.9
1,570,478	+		MPMX19_01498	0.78	-0.8
1,570,478	+		MPMX19_01498	0.78	-1.1
1,570,478	+		MPMX19_01498	0.78	-1.5
1,570,478	+		MPMX19_01498	0.78	-0.1
1,570,478	+		MPMX19_01498	0.78	+0.9
1,570,478	+		MPMX19_01498	0.78	-1.7
1,570,478	+		MPMX19_01498	0.78	-0.8
1,570,478	+		MPMX19_01498	0.78	-2.0
1,570,479	-		MPMX19_01498	0.78	-0.3
1,570,479	-		MPMX19_01498	0.78	-0.5
1,570,479	-		MPMX19_01498	0.78	-0.9
1,570,479	-		MPMX19_01498	0.78	-0.8
1,570,479	-		MPMX19_01498	0.78	-0.8
1,570,479	-		MPMX19_01498	0.78	-0.9
1,570,479	-		MPMX19_01498	0.78	-0.6
1,570,479	-		MPMX19_01498	0.78	-0.5
1,570,479	-		MPMX19_01498	0.78	-1.0
1,570,479	-		MPMX19_01498	0.78	+1.0
1,570,479	-		MPMX19_01498	0.78	-0.3
1,570,479	-		MPMX19_01498	0.78	-1.3
1,570,538	+		MPMX19_01498	0.86	-0.8
1,570,538	+		MPMX19_01498	0.86	+0.2
1,570,538	+		MPMX19_01498	0.86	-0.3
1,570,538	+		MPMX19_01498	0.86	-0.4
1,570,538	+		MPMX19_01498	0.86	-0.9
1,570,538	+		MPMX19_01498	0.86	-1.7
1,570,538	+		MPMX19_01498	0.86	-0.8
1,570,538	+		MPMX19_01498	0.86	-1.2
1,570,538	+		MPMX19_01498	0.86	-2.2
1,570,538	+		MPMX19_01498	0.86	+0.3
1,570,538	+		MPMX19_01498	0.86	+0.8
1,570,538	+		MPMX19_01498	0.86	-0.2
1,570,538	+		MPMX19_01498	0.86	-0.1
1,570,538	+		MPMX19_01498	0.86	-0.1
1,570,538	+		MPMX19_01498	0.86	+0.0
1,570,538	+		MPMX19_01498	0.86	-0.4
1,570,538	+		MPMX19_01498	0.86	-0.1
1,570,538	+		MPMX19_01498	0.86	-0.8
1,570,538	+		MPMX19_01498	0.86	-0.4
1,570,538	+		MPMX19_01498	0.86	-0.0
1,570,538	+		MPMX19_01498	0.86	-0.4
1,570,538	+		MPMX19_01498	0.86	-0.2
1,570,538	+		MPMX19_01498	0.86	-1.2
1,570,538	+		MPMX19_01498	0.86	-0.2
1,570,538	+		MPMX19_01498	0.86	-0.3
1,570,539	-		MPMX19_01498	0.86	-0.6
1,570,539	-		MPMX19_01498	0.86	-1.3
1,570,539	-		MPMX19_01498	0.86	-1.2
1,570,539	-		MPMX19_01498	0.86	-1.3
1,570,539	-		MPMX19_01498	0.86	-0.5
1,570,539	-		MPMX19_01498	0.86	-1.0
1,570,539	-		MPMX19_01498	0.86	-2.3
1,570,539	-		MPMX19_01498	0.86	-0.8
1,570,539	-		MPMX19_01498	0.86	-1.7
1,570,539	-		MPMX19_01498	0.86	+0.9
1,570,539	-		MPMX19_01498	0.86	-0.6
1,570,539	-		MPMX19_01498	0.86	-1.0
1,570,539	-		MPMX19_01498	0.86	-1.0
1,570,539	-		MPMX19_01498	0.86	-0.3
1,570,539	-		MPMX19_01498	0.86	-1.3
1,570,539	-		MPMX19_01498	0.86	-0.4
1,570,539	-		MPMX19_01498	0.86	-2.1
1,570,539	-		MPMX19_01498	0.86	-0.2
1,570,539	-		MPMX19_01498	0.86	+0.1
1,570,640	+				+0.2
1,570,640	+				+0.6
1,570,640	+				+0.3
1,570,640	+				-0.4
1,570,641	-				-0.1
1,570,641	-				-0.3
1,570,641	-				-0.3
1,570,641	-				+0.1
1,570,641	-				-0.8
1,570,641	-				-1.6
1,570,660	-				-0.4
1,570,660	-				-0.7
1,570,660	-				-0.9
1,570,728	+				-0.0
1,570,728	+				+0.3
1,570,728	+				+0.8
1,570,729	-				-1.7
1,570,729	-				+0.8
1,570,729	-				-2.1
1,570,747	-				-0.2
1,570,770	+				-0.7
1,570,770	+				-1.1
1,570,770	+				-0.8
1,570,770	+				-1.3
1,570,784	+				+0.7
1,570,784	+				-0.3
1,570,784	+				-0.7
1,570,784	+				-1.6
1,570,784	+				-0.6
1,570,784	+				-0.9
1,570,784	+				-1.9
1,570,784	+				+0.4
1,570,784	+				+0.4
1,570,784	+				-1.1
1,570,784	+				+0.9
1,570,784	+				-0.7
1,570,784	+				-0.0
1,570,784	+				-0.7
1,570,785	-				-0.4
1,570,785	-				-2.1
1,570,785	-				-0.4
1,570,785	-				-0.6
1,570,789	+				+1.7
1,571,001	+		MPMX19_01499	0.36	-0.0
1,571,002	-		MPMX19_01499	0.37	+0.7
1,571,002	-		MPMX19_01499	0.37	-1.7
1,571,002	-		MPMX19_01499	0.37	-2.1
1,571,002	-		MPMX19_01499	0.37	-2.1
1,571,002	-		MPMX19_01499	0.37	-1.6
1,571,027	+		MPMX19_01499	0.46	-1.7
1,571,027	+		MPMX19_01499	0.46	-1.7
1,571,027	+		MPMX19_01499	0.46	-0.5
1,571,027	+		MPMX19_01499	0.46	-0.9
1,571,029	+		MPMX19_01499	0.47	-1.7
1,571,029	+		MPMX19_01499	0.47	-1.6
1,571,029	+		MPMX19_01499	0.47	-2.5
1,571,029	+		MPMX19_01499	0.47	-0.8
1,571,029	+		MPMX19_01499	0.47	-1.7
1,571,030	-		MPMX19_01499	0.48	-0.9
1,571,117	+		MPMX19_01499	0.82	-1.0
1,571,118	-		MPMX19_01499	0.83	-1.2
1,571,118	-		MPMX19_01499	0.83	-0.4
1,571,246	+				-0.4
1,571,246	+				-0.9
1,571,246	+				-0.2
1,571,246	+				-0.6
1,571,246	+				+0.3
1,571,247	-				-1.7
1,571,247	-				+0.6
1,571,247	-				+0.6
1,571,247	-				-0.2
1,571,247	-				+0.6
1,571,247	-				-1.2
1,571,247	-				-0.4
1,571,247	-				-1.2
1,571,339	+		MPMX19_01500	0.16	-0.6
1,571,339	+		MPMX19_01500	0.16	+0.3
1,571,339	+		MPMX19_01500	0.16	-1.7
1,571,340	-		MPMX19_01500	0.16	-1.0
1,571,340	-		MPMX19_01500	0.16	+0.9
1,571,340	-		MPMX19_01500	0.16	+1.0
1,571,340	-		MPMX19_01500	0.16	-0.2
1,571,340	-		MPMX19_01500	0.16	-0.6
1,571,340	-		MPMX19_01500	0.16	-1.9
1,571,340	-		MPMX19_01500	0.16	-0.6
1,571,340	-		MPMX19_01500	0.16	-1.7
1,571,340	-		MPMX19_01500	0.16	-2.1
1,571,340	-		MPMX19_01500	0.16	-0.7