Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01429

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
1,490,912	+		MPMX19_01428	0.49	-0.0
1,490,912	+		MPMX19_01428	0.49	-1.1
1,490,912	+		MPMX19_01428	0.49	-0.0
1,490,912	+		MPMX19_01428	0.49	+0.9
1,490,912	+		MPMX19_01428	0.49	-0.5
1,490,912	+		MPMX19_01428	0.49	-1.2
1,490,912	+		MPMX19_01428	0.49	-1.4
1,490,912	+		MPMX19_01428	0.49	+0.1
1,490,912	+		MPMX19_01428	0.49	-0.2
1,490,912	+		MPMX19_01428	0.49	+0.8
1,490,912	+		MPMX19_01428	0.49	-0.1
1,490,913	-		MPMX19_01428	0.49	-0.6
1,490,913	-		MPMX19_01428	0.49	-0.2
1,490,913	-		MPMX19_01428	0.49	-1.6
1,490,913	-		MPMX19_01428	0.49	+0.4
1,490,913	-		MPMX19_01428	0.49	-0.9
1,490,913	-		MPMX19_01428	0.49	-1.0
1,490,913	-		MPMX19_01428	0.49	-0.9
1,490,913	-		MPMX19_01428	0.49	+0.1
1,490,913	-		MPMX19_01428	0.49	-0.1
1,490,913	-		MPMX19_01428	0.49	-0.3
1,490,913	-		MPMX19_01428	0.49	-2.1
1,490,913	-		MPMX19_01428	0.49	-0.9
1,490,913	-		MPMX19_01428	0.49	+0.2
1,490,913	-		MPMX19_01428	0.49	+0.6
1,490,964	-		MPMX19_01428	0.54	-0.1
1,490,964	-		MPMX19_01428	0.54	+0.3
1,491,131	+		MPMX19_01428	0.69	+0.6
1,491,131	+		MPMX19_01428	0.69	-0.7
1,491,131	+		MPMX19_01428	0.69	-1.0
1,491,131	+		MPMX19_01428	0.69	-0.5
1,491,131	+		MPMX19_01428	0.69	+0.4
1,491,131	+		MPMX19_01428	0.69	+1.1
1,491,131	+		MPMX19_01428	0.69	-0.2
1,491,131	+		MPMX19_01428	0.69	-0.2
1,491,131	+		MPMX19_01428	0.69	+1.4
1,491,131	+		MPMX19_01428	0.69	+0.4
1,491,131	+		MPMX19_01428	0.69	-2.0
1,491,131	+		MPMX19_01428	0.69	+0.8
1,491,132	-		MPMX19_01428	0.69	+1.1
1,491,132	-		MPMX19_01428	0.69	+0.5
1,491,132	-		MPMX19_01428	0.69	-0.7
1,491,132	-		MPMX19_01428	0.69	+0.4
1,491,132	-		MPMX19_01428	0.69	-1.4
1,491,132	-		MPMX19_01428	0.69	+1.1
1,491,272	+		MPMX19_01428	0.82	-0.7
1,491,272	+		MPMX19_01428	0.82	-0.3
1,491,273	-		MPMX19_01428	0.82	+0.6
1,491,273	-		MPMX19_01428	0.82	-0.1
1,491,711	+				-0.3
1,491,711	+				-0.6
1,491,711	+				+2.3
1,491,711	+				-0.2
1,491,711	+				+0.1
1,491,711	+				-1.9
1,491,711	+				-0.0
1,491,711	+				-0.7
1,491,711	+				-2.1
1,491,711	+				+0.3
1,491,711	+				-0.3
1,491,711	+				+1.1
1,491,711	+				-0.2
1,491,711	+				-0.0
1,491,711	+				+1.3
1,491,711	+				-1.2
1,491,711	+				-0.4
1,491,711	+				-0.3
1,491,711	+				+0.2
1,491,711	+				-0.7
1,491,711	+				-0.4
1,491,711	+				+0.3
1,491,711	+				-0.2
1,491,711	+				-0.5
1,491,711	+				-0.7
1,491,711	+				-0.5
1,491,712	-				-0.0
1,491,712	-				-1.0
1,491,712	-				-0.6
1,491,712	-				+0.3
1,491,712	-				-0.0
1,491,712	-				-1.6
1,491,712	-				-0.5
1,491,712	-				-1.2
1,491,712	-				-0.7
1,491,712	-				-2.4
1,491,712	-				-0.6
1,491,712	-				-0.9
1,491,712	-				-1.0
1,491,712	-				-0.0
1,491,712	-				+1.2
1,491,712	-				-1.1
1,491,712	-				-1.3
1,491,712	-				-1.9
1,491,712	-				+0.6
1,491,712	-				-0.5
1,491,712	-				+0.1
1,491,712	-				+0.8
1,491,712	-				-0.7
1,491,712	-				+0.8
1,491,712	-				-0.7
1,491,712	-				-1.0
1,491,712	-				+0.3
1,491,712	-				+0.6
1,491,712	-				+0.6
1,491,712	-				-0.4
1,491,713	+				+0.7
1,491,713	+				-1.0
1,491,713	+				-0.3
1,491,714	-				-1.0
1,491,714	-				+0.3
1,491,714	-				+0.1
1,491,714	-				+0.4
1,491,725	+				+0.1
1,491,725	+				+0.1
1,491,726	-				-0.3
1,491,726	-				+1.2
1,491,726	-				-1.1
1,491,726	-				-1.0
1,491,726	-				+0.7
1,491,726	-				-0.7
1,491,783	+				+0.1
1,491,783	+				-0.3
1,491,783	+				-1.0
1,491,784	-				-1.2
1,491,784	-				+0.1
1,492,137	+		MPMX19_01429	0.24	-0.1
1,492,137	+		MPMX19_01429	0.24	-0.0
1,492,137	+		MPMX19_01429	0.24	+1.6
1,492,137	+		MPMX19_01429	0.24	-1.3
1,492,137	+		MPMX19_01429	0.24	-1.0
1,492,137	+		MPMX19_01429	0.24	-0.4
1,492,137	+		MPMX19_01429	0.24	+0.0
1,492,137	+		MPMX19_01429	0.24	-0.7
1,492,138	-		MPMX19_01429	0.25	-2.2
1,492,138	-		MPMX19_01429	0.25	-0.9
1,492,138	-		MPMX19_01429	0.25	-0.7
1,492,138	-		MPMX19_01429	0.25	-0.2
1,492,138	-		MPMX19_01429	0.25	-0.6
1,492,138	-		MPMX19_01429	0.25	-0.9
1,492,138	-		MPMX19_01429	0.25	-1.2
1,492,138	-		MPMX19_01429	0.25	-0.0
1,492,356	+		MPMX19_01429	0.42	-0.6
1,492,356	+		MPMX19_01429	0.42	+0.1
1,492,356	+		MPMX19_01429	0.42	-1.7
1,492,357	-		MPMX19_01429	0.42	+0.5
1,492,357	-		MPMX19_01429	0.42	-1.4
1,492,357	-		MPMX19_01429	0.42	-1.4
1,492,357	-		MPMX19_01429	0.42	-0.6
1,492,357	-		MPMX19_01429	0.42	-1.0
1,492,357	-		MPMX19_01429	0.42	-0.7
1,492,357	-		MPMX19_01429	0.42	+0.3
1,492,357	-		MPMX19_01429	0.42	-0.7
1,492,357	-		MPMX19_01429	0.42	-0.5
1,492,357	-		MPMX19_01429	0.42	-0.7
1,492,809	+		MPMX19_01429	0.77	+0.1
1,492,809	+		MPMX19_01429	0.77	-0.4
1,492,809	+		MPMX19_01429	0.77	-0.5
1,492,809	+		MPMX19_01429	0.77	-0.7
1,492,809	+		MPMX19_01429	0.77	+0.3
1,492,809	+		MPMX19_01429	0.77	-0.1
1,492,809	+		MPMX19_01429	0.77	-1.2
1,492,809	+		MPMX19_01429	0.77	-1.2
1,492,809	+		MPMX19_01429	0.77	-0.0
1,492,809	+		MPMX19_01429	0.77	+1.0
1,492,809	+		MPMX19_01429	0.77	-1.1
1,492,809	+		MPMX19_01429	0.77	-2.5
1,492,810	-		MPMX19_01429	0.77	-0.3
1,492,810	-		MPMX19_01429	0.77	-1.2
1,492,810	-		MPMX19_01429	0.77	+0.2
1,492,810	-		MPMX19_01429	0.77	-1.1
1,492,810	-		MPMX19_01429	0.77	-0.4
1,492,810	-		MPMX19_01429	0.77	-0.2
1,492,810	-		MPMX19_01429	0.77	-0.6
1,492,810	-		MPMX19_01429	0.77	-0.5
1,492,810	-		MPMX19_01429	0.77	-0.7
1,492,827	+		MPMX19_01429	0.79	+1.4
1,492,827	+		MPMX19_01429	0.79	+0.1
1,492,827	+		MPMX19_01429	0.79	-1.2
1,492,827	+		MPMX19_01429	0.79	-1.2
1,492,827	+		MPMX19_01429	0.79	-0.9
1,492,828	-		MPMX19_01429	0.79	-0.4
1,492,828	-		MPMX19_01429	0.79	+0.6
1,492,828	-		MPMX19_01429	0.79	-0.2
1,492,828	-		MPMX19_01429	0.79	-0.4
1,492,828	-		MPMX19_01429	0.79	-0.0
1,493,014	+				+0.8
1,493,015	-				-1.9
1,493,103	+				-1.0
1,493,103	+				+0.6
1,493,103	+				+1.1
1,493,104	-				+0.8
1,493,104	-				+0.8
1,493,139	+				-0.0
1,493,140	-				-0.8
1,493,824	+				-2.3
1,493,824	+				+0.8
1,493,824	+				+0.4
1,493,825	-				-1.6
1,493,825	-				-1.0
1,493,825	-				-0.6
1,493,869	+				-0.0
1,493,923	-				+0.7
1,493,966	+				-2.1
1,493,966	+				-0.9
1,493,966	+				-1.4
1,493,966	+				+0.1
1,493,966	+				-0.4
1,493,966	+				+0.1
1,493,966	+				-0.4
1,493,966	+				-0.5
1,493,966	+				-0.2
1,493,966	+				-1.9
1,493,966	+				-0.1
1,493,966	+				+1.6
1,493,966	+				+0.6
1,493,966	+				-0.3
1,493,966	+				+0.3
1,493,966	+				+1.3
1,493,966	+				+0.3
1,493,966	+				+0.8
1,493,966	+				-1.9
1,493,966	+				-1.6
1,493,966	+				-0.6
1,493,967	-				-1.8
1,493,967	-				+0.6
1,493,967	-				+0.3
1,493,967	-				-1.4
1,493,967	-				-0.3
1,493,967	-				-1.1
1,493,967	-				-0.8
1,493,967	-				-0.2
1,493,967	-				-0.2
1,493,967	-				-1.3
1,493,967	-				-0.5
1,493,967	-				-0.6
1,493,967	-				-0.4
1,493,967	-				+1.2
1,493,967	-				-0.5
1,493,967	-				-0.9
1,493,967	-				-1.2
1,493,967	-				-0.6
1,493,967	-				-0.8
1,493,967	-				-0.0
1,493,967	-				-0.4
1,493,991	+				-0.9
1,493,992	-				-0.0