Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01341

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
1,394,845	+				-2.2
1,394,846	-				-1.0
1,394,846	-				-0.0
1,394,846	-				+1.3
1,394,969	-				-1.7
1,394,970	+				+0.6
1,394,970	+				-0.7
1,394,970	+				+0.3
1,394,970	+				-0.8
1,394,971	-				-0.7
1,394,971	-				+0.6
1,394,971	-				+1.6
1,394,989	-				+0.7
1,395,000	+				+0.1
1,395,000	+				-1.5
1,395,000	+				-1.2
1,395,000	+				-0.8
1,395,001	-				+0.8
1,395,001	-				-0.5
1,395,001	-				-0.0
1,395,001	-				-0.2
1,395,001	-				+0.1
1,395,001	-				-2.8
1,395,001	-				-0.0
1,395,001	-				+0.6
1,395,001	-				+1.0
1,395,001	-				-0.7
1,395,002	+				-0.2
1,395,002	+				-1.0
1,395,003	-				+1.8
1,395,003	-				+0.4
1,395,003	-				-0.7
1,395,003	-				-0.9
1,395,003	-				+1.0
1,395,003	-				-1.4
1,395,003	-				+1.6
1,395,038	-				-0.4
1,395,147	+				-0.0
1,395,219	+				-0.6
1,395,219	+				-1.8
1,395,220	-				-1.1
1,395,324	+				-0.2
1,395,354	+				-3.1
1,395,354	+				-2.2
1,395,354	+				-0.6
1,395,355	-				-0.7
1,395,355	-				-0.9
1,395,355	-				+0.3
1,395,355	-				+0.4
1,395,365	+				-0.0
1,395,365	+				-0.4
1,395,396	+				-0.4
1,395,397	-				+0.4
1,395,397	-				+0.0
1,395,408	-				+0.2
1,395,569	+		MPMX19_01341	0.18	-1.4
1,395,569	+		MPMX19_01341	0.18	-1.6
1,395,569	+		MPMX19_01341	0.18	-0.2
1,395,570	-		MPMX19_01341	0.18	+0.7
1,395,570	-		MPMX19_01341	0.18	-2.6
1,395,570	-		MPMX19_01341	0.18	-2.7
1,395,570	-		MPMX19_01341	0.18	-0.2
1,395,570	-		MPMX19_01341	0.18	+0.6
1,395,659	+		MPMX19_01341	0.31	-0.2
1,395,827	+		MPMX19_01341	0.55	-0.8
1,395,827	+		MPMX19_01341	0.55	-0.3
1,395,827	+		MPMX19_01341	0.55	-1.7
1,395,827	+		MPMX19_01341	0.55	-1.0
1,395,827	+		MPMX19_01341	0.55	-0.8
1,395,827	+		MPMX19_01341	0.55	+0.9
1,395,827	+		MPMX19_01341	0.55	-2.0
1,395,827	+		MPMX19_01341	0.55	-1.9
1,395,827	+		MPMX19_01341	0.55	+0.6
1,395,827	+		MPMX19_01341	0.55	-0.0
1,395,827	+		MPMX19_01341	0.55	-0.0
1,395,828	-		MPMX19_01341	0.55	-0.6
1,395,828	-		MPMX19_01341	0.55	-0.9
1,395,828	-		MPMX19_01341	0.55	-0.3
1,395,828	-		MPMX19_01341	0.55	+0.6
1,395,828	-		MPMX19_01341	0.55	-1.5
1,395,828	-		MPMX19_01341	0.55	-1.1
1,395,828	-		MPMX19_01341	0.55	-1.2
1,395,828	-		MPMX19_01341	0.55	-0.3
1,395,828	-		MPMX19_01341	0.55	-1.6
1,395,828	-		MPMX19_01341	0.55	-0.1
1,395,828	-		MPMX19_01341	0.55	-1.7
1,395,828	-		MPMX19_01341	0.55	-0.3
1,395,836	+		MPMX19_01341	0.57	-0.3
1,395,837	-		MPMX19_01341	0.57	-0.5
1,395,837	-		MPMX19_01341	0.57	+0.2
1,395,837	-		MPMX19_01341	0.57	+1.2
1,395,837	-		MPMX19_01341	0.57	-0.6
1,395,896	+		MPMX19_01341	0.65	+0.8
1,395,896	+		MPMX19_01341	0.65	-0.4
1,395,896	+		MPMX19_01341	0.65	-0.4
1,395,896	+		MPMX19_01341	0.65	-0.6
1,395,896	+		MPMX19_01341	0.65	-0.6
1,395,896	+		MPMX19_01341	0.65	+0.0
1,395,896	+		MPMX19_01341	0.65	+1.2
1,395,896	+		MPMX19_01341	0.65	-0.2
1,395,896	+		MPMX19_01341	0.65	-0.4
1,395,897	-		MPMX19_01341	0.65	-0.9
1,395,897	-		MPMX19_01341	0.65	+0.4
1,395,897	-		MPMX19_01341	0.65	+0.6
1,395,897	-		MPMX19_01341	0.65	-0.2
1,395,897	-		MPMX19_01341	0.65	-1.0
1,395,897	-		MPMX19_01341	0.65	-0.6
1,395,897	-		MPMX19_01341	0.65	-0.3
1,395,968	+		MPMX19_01341	0.76	+1.3
1,395,968	+		MPMX19_01341	0.76	-0.9
1,395,968	+		MPMX19_01341	0.76	-0.4
1,395,968	+		MPMX19_01341	0.76	+0.8
1,395,968	+		MPMX19_01341	0.76	-1.4
1,395,968	+		MPMX19_01341	0.76	-0.0
1,395,968	+		MPMX19_01341	0.76	-1.4
1,395,968	+		MPMX19_01341	0.76	-1.0
1,395,968	+		MPMX19_01341	0.76	+0.8
1,395,968	+		MPMX19_01341	0.76	+0.2
1,395,968	+		MPMX19_01341	0.76	+0.8
1,395,968	+		MPMX19_01341	0.76	-0.2
1,395,968	+		MPMX19_01341	0.76	+0.4
1,395,969	-		MPMX19_01341	0.76	+0.2
1,395,969	-		MPMX19_01341	0.76	+0.3
1,395,969	-		MPMX19_01341	0.76	-1.5
1,395,969	-		MPMX19_01341	0.76	+0.6
1,395,969	-		MPMX19_01341	0.76	+0.9
1,395,969	-		MPMX19_01341	0.76	-2.1
1,395,969	-		MPMX19_01341	0.76	+2.2
1,395,969	-		MPMX19_01341	0.76	-0.4
1,395,969	-		MPMX19_01341	0.76	+0.2
1,395,969	-		MPMX19_01341	0.76	+0.2
1,396,007	+		MPMX19_01341	0.82	+0.8
1,396,007	+		MPMX19_01341	0.82	+0.3
1,396,007	+		MPMX19_01341	0.82	-3.4
1,396,007	+		MPMX19_01341	0.82	-0.8
1,396,007	+		MPMX19_01341	0.82	-0.2
1,396,007	+		MPMX19_01341	0.82	-0.4
1,396,007	+		MPMX19_01341	0.82	-0.7
1,396,008	-		MPMX19_01341	0.82	-1.3
1,396,008	-		MPMX19_01341	0.82	+1.6
1,396,008	-		MPMX19_01341	0.82	+0.6
1,396,008	-		MPMX19_01341	0.82	-1.7
1,396,008	-		MPMX19_01341	0.82	-0.1
1,396,161	-				+1.4
1,396,238	+				+1.6
1,396,238	+				-0.2
1,396,238	+				-1.2
1,396,594	+		MPMX19_01342	0.64	+0.1
1,396,594	+		MPMX19_01342	0.64	+0.6
1,396,594	+		MPMX19_01342	0.64	+0.3
1,396,594	+		MPMX19_01342	0.64	+0.2
1,396,595	-		MPMX19_01342	0.64	-0.7
1,396,595	-		MPMX19_01342	0.64	+1.3
1,396,595	-		MPMX19_01342	0.64	-0.7
1,396,595	-		MPMX19_01342	0.64	-0.3
1,396,794	+				-0.9
1,396,794	+				-0.7
1,396,794	+				-0.6
1,396,794	+				-2.1
1,396,794	+				-1.7
1,396,794	+				-0.3
1,396,794	+				-2.3
1,396,794	+				+0.9
1,396,795	-				-1.2
1,396,795	-				-1.4
1,396,795	-				-0.2
1,396,795	-				+0.0
1,396,795	-				-0.7
1,396,795	-				-0.3
1,396,795	-				-0.6
1,396,810	+				-0.4
1,396,810	+				-1.9
1,396,810	+				-2.2
1,396,811	-				+0.3
1,396,856	+				+1.1
1,397,103	+		MPMX19_01343	0.15	-0.4
1,397,103	+		MPMX19_01343	0.15	-0.9
1,397,103	+		MPMX19_01343	0.15	+0.8
1,397,103	+		MPMX19_01343	0.15	-0.7
1,397,103	+		MPMX19_01343	0.15	-0.4
1,397,104	-		MPMX19_01343	0.15	-0.2
1,397,104	-		MPMX19_01343	0.15	-1.1
1,397,104	-		MPMX19_01343	0.15	-1.0
1,397,104	-		MPMX19_01343	0.15	-0.6
1,397,104	-		MPMX19_01343	0.15	-0.4
1,397,104	-		MPMX19_01343	0.15	-0.1