Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01065 and MPMX19_01066 are separated by 86 nucleotides MPMX19_01066 and MPMX19_01067 are separated by 219 nucleotides MPMX19_01067 and MPMX19_01068 are separated by 38 nucleotides MPMX19_01068 and MPMX19_01069 are separated by 97 nucleotides
MPMX19_01065: MPMX19_01065 - hypothetical protein, at 1,104,539 to 1,104,919
_01065
MPMX19_01066: MPMX19_01066 - hypothetical protein, at 1,105,006 to 1,105,173
_01066
MPMX19_01067: MPMX19_01067 - hypothetical protein, at 1,105,393 to 1,105,773
_01067
MPMX19_01068: MPMX19_01068 - hypothetical protein, at 1,105,812 to 1,106,627
_01068
MPMX19_01069: MPMX19_01069 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 1,106,725 to 1,107,495
_01069
Position (kb) 1105
1106
1107 Strain fitness (log2 ratio) -2
-1
0
1 at 1104.917 kb on + strand at 1104.960 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1105.092 kb on - strand, within MPMX19_01066 at 1105.161 kb on + strand at 1105.161 kb on + strand at 1105.161 kb on + strand at 1105.161 kb on + strand at 1105.161 kb on + strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.247 kb on + strand at 1105.247 kb on + strand at 1105.247 kb on + strand at 1105.248 kb on - strand at 1105.248 kb on - strand at 1105.248 kb on - strand at 1105.248 kb on - strand at 1105.248 kb on - strand at 1105.248 kb on - strand at 1105.338 kb on + strand at 1105.338 kb on + strand at 1105.572 kb on + strand, within MPMX19_01067 at 1105.573 kb on - strand, within MPMX19_01067 at 1106.462 kb on - strand, within MPMX19_01068 at 1106.563 kb on + strand at 1106.563 kb on + strand at 1106.563 kb on + strand at 1106.563 kb on + strand at 1106.563 kb on + strand at 1106.563 kb on + strand at 1106.564 kb on - strand at 1106.564 kb on - strand at 1106.605 kb on + strand at 1106.605 kb on + strand at 1106.606 kb on - strand at 1106.606 kb on - strand at 1106.606 kb on - strand at 1106.606 kb on - strand at 1106.606 kb on - strand at 1106.606 kb on - strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1107.057 kb on + strand, within MPMX19_01069 at 1107.057 kb on + strand, within MPMX19_01069 at 1107.057 kb on + strand, within MPMX19_01069 at 1107.057 kb on + strand, within MPMX19_01069 at 1107.057 kb on + strand, within MPMX19_01069 at 1107.058 kb on - strand, within MPMX19_01069 at 1107.058 kb on - strand, within MPMX19_01069 at 1107.058 kb on - strand, within MPMX19_01069 at 1107.058 kb on - strand, within MPMX19_01069 at 1107.058 kb on - strand, within MPMX19_01069 at 1107.190 kb on + strand, within MPMX19_01069 at 1107.190 kb on + strand, within MPMX19_01069 at 1107.190 kb on + strand, within MPMX19_01069 at 1107.190 kb on + strand, within MPMX19_01069 at 1107.190 kb on + strand, within MPMX19_01069 at 1107.190 kb on + strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.504 kb on + strand at 1107.504 kb on + strand at 1107.504 kb on + strand at 1107.505 kb on - strand at 1107.505 kb on - strand at 1107.505 kb on - strand at 1107.513 kb on + strand at 1107.513 kb on + strand at 1107.513 kb on + strand at 1107.513 kb on + strand at 1107.513 kb on + strand at 1107.514 kb on - strand at 1107.514 kb on - strand at 1107.514 kb on - strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.593 kb on + strand at 1107.593 kb on + strand at 1107.593 kb on + strand at 1107.593 kb on + strand at 1107.593 kb on + strand at 1107.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 1,104,917 + -1.1 1,104,960 + -0.4 1,104,983 + -0.2 1,104,983 + +1.6 1,104,983 + -0.4 1,104,983 + -1.6 1,104,983 + +0.0 1,104,983 + +0.0 1,104,983 + +0.6 1,104,983 + -1.4 1,104,983 + -1.0 1,104,983 + -1.4 1,104,983 + +0.1 1,104,983 + -0.9 1,104,983 + +0.5 1,104,983 + +0.2 1,104,983 + -1.3 1,104,984 - -0.2 1,104,984 - -0.5 1,104,984 - -1.3 1,104,984 - +0.1 1,104,984 - +0.1 1,104,984 - -1.6 1,104,984 - -0.9 1,104,984 - -0.9 1,104,984 - -1.0 1,104,984 - +1.6 1,104,984 - +0.1 1,104,984 - +0.0 1,104,984 - -2.0 1,104,984 - +0.1 1,104,984 - +0.3 1,105,092 - MPMX19_01066 0.51 +0.0 1,105,161 + -0.9 1,105,161 + -0.4 1,105,161 + +0.5 1,105,161 + -0.6 1,105,161 + +0.2 1,105,162 - -0.3 1,105,162 - -1.2 1,105,162 - -0.8 1,105,162 - -0.3 1,105,162 - -0.4 1,105,162 - -2.0 1,105,162 - -0.2 1,105,162 - -0.2 1,105,162 - -1.8 1,105,162 - +0.6 1,105,247 + -0.2 1,105,247 + -1.7 1,105,247 + -0.2 1,105,248 - -1.4 1,105,248 - -0.7 1,105,248 - +0.0 1,105,248 - -0.8 1,105,248 - -2.2 1,105,248 - -1.1 1,105,338 + -1.7 1,105,338 + -2.0 1,105,572 + MPMX19_01067 0.47 +0.5 1,105,573 - MPMX19_01067 0.47 -1.7 1,106,462 - MPMX19_01068 0.80 +1.0 1,106,563 + -1.0 1,106,563 + +0.1 1,106,563 + -1.2 1,106,563 + -0.9 1,106,563 + -0.9 1,106,563 + +0.0 1,106,564 - -1.0 1,106,564 - -0.7 1,106,605 + +0.0 1,106,605 + +0.6 1,106,606 - -0.5 1,106,606 - -0.7 1,106,606 - -1.5 1,106,606 - +0.1 1,106,606 - +0.1 1,106,606 - -1.5 1,106,712 + +0.0 1,106,712 + -0.7 1,106,712 + -0.7 1,106,712 + +0.0 1,106,712 + -0.1 1,106,712 + +0.8 1,106,712 + -0.7 1,106,712 + -0.4 1,106,712 + -0.7 1,106,712 + +0.2 1,106,712 + -2.0 1,106,712 + +0.9 1,106,712 + -0.4 1,106,712 + -0.4 1,106,712 + -0.1 1,106,712 + +0.0 1,106,712 + +1.6 1,106,712 + -0.3 1,106,712 + -1.2 1,106,712 + +0.9 1,106,712 + -0.2 1,106,712 + +0.4 1,106,712 + +0.1 1,106,712 + -1.0 1,106,712 + -1.0 1,106,712 + -0.3 1,106,712 + -0.8 1,106,712 + +0.2 1,106,712 + -0.7 1,106,712 + -0.2 1,106,713 - +0.8 1,106,713 - -0.6 1,106,713 - -0.1 1,106,713 - +0.3 1,106,713 - +0.3 1,106,713 - -0.8 1,106,713 - -1.0 1,106,713 - +0.8 1,106,713 - +1.0 1,106,713 - -0.4 1,106,713 - +0.6 1,106,713 - -0.7 1,106,713 - -0.8 1,106,713 - +0.4 1,106,713 - -1.2 1,106,713 - +0.2 1,106,713 - -0.7 1,106,713 - -1.8 1,106,713 - +0.3 1,106,713 - -0.7 1,106,713 - -0.7 1,106,713 - -0.7 1,106,713 - +0.1 1,106,713 - -1.3 1,106,713 - -2.1 1,106,716 + -0.2 1,106,716 + +0.2 1,106,716 + +0.5 1,106,716 + -0.1 1,106,716 + -1.9 1,106,716 + -1.0 1,106,716 + -0.5 1,106,716 + +0.5 1,106,716 + -0.8 1,106,716 + +1.3 1,106,716 + -1.4 1,106,716 + +0.5 1,106,716 + -1.7 1,106,716 + -2.2 1,106,716 + -0.2 1,106,716 + +0.3 1,106,716 + -2.6 1,106,716 + +0.7 1,106,716 + -1.8 1,106,716 + +0.3 1,106,716 + +0.0 1,106,716 + +0.3 1,106,716 + +0.4 1,106,716 + -0.7 1,106,716 + -0.4 1,106,716 + +0.1 1,106,716 + -1.0 1,106,717 - +0.6 1,106,717 - +0.0 1,106,717 - -0.8 1,106,717 - -0.3 1,106,717 - -0.1 1,106,717 - -0.4 1,106,717 - +0.8 1,106,717 - -0.4 1,106,717 - -1.4 1,106,717 - +1.3 1,106,717 - +0.0 1,107,057 + MPMX19_01069 0.43 -0.3 1,107,057 + MPMX19_01069 0.43 +0.1 1,107,057 + MPMX19_01069 0.43 -1.0 1,107,057 + MPMX19_01069 0.43 +0.1 1,107,057 + MPMX19_01069 0.43 +0.6 1,107,058 - MPMX19_01069 0.43 -0.3 1,107,058 - MPMX19_01069 0.43 -1.9 1,107,058 - MPMX19_01069 0.43 -1.1 1,107,058 - MPMX19_01069 0.43 -0.6 1,107,058 - MPMX19_01069 0.43 -0.2 1,107,190 + MPMX19_01069 0.60 -1.2 1,107,190 + MPMX19_01069 0.60 -0.8 1,107,190 + MPMX19_01069 0.60 -1.3 1,107,190 + MPMX19_01069 0.60 -1.2 1,107,190 + MPMX19_01069 0.60 +0.5 1,107,190 + MPMX19_01069 0.60 -0.3 1,107,191 - MPMX19_01069 0.60 -0.7 1,107,191 - MPMX19_01069 0.60 -1.0 1,107,191 - MPMX19_01069 0.60 -1.7 1,107,191 - MPMX19_01069 0.60 -0.5 1,107,191 - MPMX19_01069 0.60 +0.6 1,107,191 - MPMX19_01069 0.60 +1.1 1,107,191 - MPMX19_01069 0.60 -0.4 1,107,191 - MPMX19_01069 0.60 -1.2 1,107,191 - MPMX19_01069 0.60 -0.2 1,107,191 - MPMX19_01069 0.60 +0.2 1,107,191 - MPMX19_01069 0.60 -2.4 1,107,191 - MPMX19_01069 0.60 +1.0 1,107,504 + -0.7 1,107,504 + -0.5 1,107,504 + -0.3 1,107,505 - +1.2 1,107,505 - -1.4 1,107,505 - +0.5 1,107,513 + -0.3 1,107,513 + +0.6 1,107,513 + -1.6 1,107,513 + +0.0 1,107,513 + -0.9 1,107,514 - -1.0 1,107,514 - -0.2 1,107,514 - -1.3 1,107,559 + -1.3 1,107,559 + +0.0 1,107,559 + -1.0 1,107,559 + +0.4 1,107,559 + -1.0 1,107,559 + -0.3 1,107,559 + -0.3 1,107,559 + +0.3 1,107,559 + +1.0 1,107,559 + -0.4 1,107,559 + +0.6 1,107,559 + -0.2 1,107,559 + -1.1 1,107,559 + -0.7 1,107,559 + +0.9 1,107,559 + -0.1 1,107,559 + -2.7 1,107,559 + -0.1 1,107,559 + -0.5 1,107,559 + -1.2 1,107,559 + -0.9 1,107,559 + -1.1 1,107,559 + -0.5 1,107,559 + +0.0 1,107,559 + -1.8 1,107,559 + -0.5 1,107,559 + +0.0 1,107,559 + +0.0 1,107,559 + -0.6 1,107,559 + -0.8 1,107,559 + -0.7 1,107,559 + -1.1 1,107,559 + -0.8 1,107,559 + +0.1 1,107,559 + -0.1 1,107,559 + -0.9 1,107,559 + +0.6 1,107,560 - -0.7 1,107,560 - +0.4 1,107,560 - -0.4 1,107,560 - +0.0 1,107,560 - +1.3 1,107,560 - +0.1 1,107,560 - -0.7 1,107,560 - -1.0 1,107,560 - -1.2 1,107,560 - -1.1 1,107,560 - -1.9 1,107,560 - -0.7 1,107,560 - -0.6 1,107,560 - +1.6 1,107,560 - -0.6 1,107,560 - -0.8 1,107,560 - -0.2 1,107,560 - -2.7 1,107,560 - +0.2 1,107,560 - +0.5 1,107,560 - -1.4 1,107,560 - +0.6 1,107,560 - +1.7 1,107,560 - -1.4 1,107,560 - -1.1 1,107,560 - +0.4 1,107,560 - -1.6 1,107,560 - -0.7 1,107,560 - +0.2 1,107,560 - -0.2 1,107,560 - -0.4 1,107,560 - -1.1 1,107,560 - +1.2 1,107,560 - -0.5 1,107,560 - -0.4 1,107,560 - +0.3 1,107,560 - -0.5 1,107,560 - -0.5 1,107,560 - +0.9 1,107,560 - +0.8 1,107,560 - +1.2 1,107,560 - +1.1 1,107,593 + -0.6 1,107,593 + +0.6 1,107,593 + -1.6 1,107,593 + +0.3 1,107,593 + -1.2 1,107,594 - -0.2
Or see this region's nucleotide sequence