Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00941 and MPMX19_00942 are separated by 94 nucleotides MPMX19_00942 and MPMX19_00943 are separated by 39 nucleotides MPMX19_00943 and MPMX19_00944 are separated by 244 nucleotides MPMX19_00944 and MPMX19_00945 are separated by 215 nucleotides
MPMX19_00941: MPMX19_00941 - Endolytic murein transglycosylase, at 977,660 to 978,667
_00941
MPMX19_00942: MPMX19_00942 - hypothetical protein, at 978,762 to 979,067
_00942
MPMX19_00943: MPMX19_00943 - hypothetical protein, at 979,107 to 979,346
_00943
MPMX19_00944: MPMX19_00944 - hypothetical protein, at 979,591 to 981,594
_00944
MPMX19_00945: MPMX19_00945 - hypothetical protein, at 981,810 to 983,051
_00945
Position (kb) 979
980
981
982 Strain fitness (log2 ratio) -2
-1
0
1
2 at 978.697 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.801 kb on + strand, within MPMX19_00942 at 978.801 kb on + strand, within MPMX19_00942 at 978.802 kb on - strand, within MPMX19_00942 at 978.978 kb on - strand, within MPMX19_00942 at 978.978 kb on - strand, within MPMX19_00942 at 978.978 kb on - strand, within MPMX19_00942 at 978.978 kb on - strand, within MPMX19_00942 at 978.978 kb on - strand, within MPMX19_00942 at 978.978 kb on - strand, within MPMX19_00942 at 978.985 kb on + strand, within MPMX19_00942 at 978.985 kb on + strand, within MPMX19_00942 at 978.985 kb on + strand, within MPMX19_00942 at 978.986 kb on - strand, within MPMX19_00942 at 978.986 kb on - strand, within MPMX19_00942 at 978.986 kb on - strand, within MPMX19_00942 at 978.986 kb on - strand, within MPMX19_00942 at 978.986 kb on - strand, within MPMX19_00942 at 979.175 kb on - strand, within MPMX19_00943 at 979.214 kb on + strand, within MPMX19_00943 at 979.215 kb on - strand, within MPMX19_00943 at 979.375 kb on + strand at 979.375 kb on + strand at 979.375 kb on + strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.385 kb on + strand at 979.386 kb on - strand at 979.425 kb on + strand at 979.425 kb on + strand at 979.436 kb on + strand at 979.437 kb on - strand at 979.442 kb on + strand at 979.442 kb on + strand at 979.443 kb on - strand at 979.443 kb on - strand at 979.453 kb on + strand at 979.453 kb on + strand at 979.454 kb on - strand at 979.454 kb on - strand at 979.460 kb on + strand at 979.460 kb on + strand at 979.460 kb on + strand at 979.460 kb on + strand at 979.460 kb on + strand at 979.461 kb on - strand at 979.461 kb on - strand at 979.461 kb on - strand at 979.464 kb on + strand at 979.464 kb on + strand at 979.465 kb on - strand at 979.487 kb on + strand at 980.390 kb on + strand, within MPMX19_00944 at 980.390 kb on + strand, within MPMX19_00944 at 980.390 kb on + strand, within MPMX19_00944 at 980.390 kb on + strand, within MPMX19_00944 at 980.390 kb on + strand, within MPMX19_00944 at 980.391 kb on - strand, within MPMX19_00944 at 980.391 kb on - strand, within MPMX19_00944 at 980.391 kb on - strand, within MPMX19_00944 at 980.391 kb on - strand, within MPMX19_00944 at 980.391 kb on - strand, within MPMX19_00944 at 980.391 kb on - strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.143 kb on + strand, within MPMX19_00944 at 981.143 kb on + strand, within MPMX19_00944 at 981.143 kb on + strand, within MPMX19_00944 at 981.143 kb on + strand, within MPMX19_00944 at 981.144 kb on - strand, within MPMX19_00944 at 981.144 kb on - strand, within MPMX19_00944 at 981.144 kb on - strand, within MPMX19_00944 at 981.144 kb on - strand, within MPMX19_00944 at 981.420 kb on - strand at 981.420 kb on - strand at 981.446 kb on + strand at 981.446 kb on + strand at 981.446 kb on + strand at 981.447 kb on - strand at 981.447 kb on - strand at 981.447 kb on - strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.804 kb on - strand at 981.804 kb on - strand at 981.804 kb on - strand at 981.804 kb on - strand at 981.804 kb on - strand at 982.000 kb on + strand, within MPMX19_00945 at 982.000 kb on + strand, within MPMX19_00945 at 982.000 kb on + strand, within MPMX19_00945 at 982.000 kb on + strand, within MPMX19_00945 at 982.000 kb on + strand, within MPMX19_00945 at 982.001 kb on - strand, within MPMX19_00945 at 982.001 kb on - strand, within MPMX19_00945 at 982.001 kb on - strand, within MPMX19_00945 at 982.001 kb on - strand, within MPMX19_00945 at 982.001 kb on - strand, within MPMX19_00945 at 982.251 kb on + strand, within MPMX19_00945 at 982.251 kb on + strand, within MPMX19_00945 at 982.251 kb on + strand, within MPMX19_00945 at 982.251 kb on + strand, within MPMX19_00945 at 982.252 kb on - strand, within MPMX19_00945 at 982.252 kb on - strand, within MPMX19_00945 at 982.252 kb on - strand, within MPMX19_00945
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 978,697 + -0.4 978,760 + -1.2 978,760 + -0.2 978,760 + -0.7 978,760 + -0.1 978,760 + -1.2 978,760 + -1.8 978,760 + +0.0 978,760 + -0.2 978,760 + +0.3 978,760 + +0.1 978,760 + -0.4 978,760 + +0.4 978,760 + +1.8 978,760 + -0.6 978,760 + -1.4 978,760 + -0.9 978,760 + -0.8 978,760 + -0.8 978,760 + -0.1 978,760 + -0.7 978,760 + +0.6 978,760 + -1.6 978,760 + -0.3 978,760 + -0.5 978,760 + +0.7 978,761 - -0.6 978,761 - -0.4 978,761 - +0.8 978,761 - +0.1 978,761 - -0.2 978,761 - -0.2 978,761 - +0.0 978,761 - +0.0 978,761 - +0.4 978,761 - -1.0 978,761 - -0.6 978,761 - +0.4 978,761 - +0.6 978,761 - -0.8 978,761 - -2.2 978,761 - -1.1 978,761 - -0.5 978,761 - -1.1 978,761 - -0.6 978,761 - +1.3 978,761 - -0.2 978,761 - +0.0 978,761 - -0.4 978,761 - -0.3 978,761 - +0.0 978,761 - -0.1 978,761 - +0.8 978,761 - -0.3 978,801 + MPMX19_00942 0.13 +0.6 978,801 + MPMX19_00942 0.13 +0.2 978,802 - MPMX19_00942 0.13 -0.6 978,978 - MPMX19_00942 0.71 +0.3 978,978 - MPMX19_00942 0.71 -0.2 978,978 - MPMX19_00942 0.71 -0.4 978,978 - MPMX19_00942 0.71 +0.8 978,978 - MPMX19_00942 0.71 -1.0 978,978 - MPMX19_00942 0.71 +0.8 978,985 + MPMX19_00942 0.73 -0.1 978,985 + MPMX19_00942 0.73 +0.8 978,985 + MPMX19_00942 0.73 -0.0 978,986 - MPMX19_00942 0.73 +0.6 978,986 - MPMX19_00942 0.73 -1.7 978,986 - MPMX19_00942 0.73 -1.1 978,986 - MPMX19_00942 0.73 -0.4 978,986 - MPMX19_00942 0.73 -2.0 979,175 - MPMX19_00943 0.28 -1.6 979,214 + MPMX19_00943 0.45 +0.0 979,215 - MPMX19_00943 0.45 +2.3 979,375 + -1.6 979,375 + +0.3 979,375 + -0.3 979,376 - -2.0 979,376 - -2.7 979,376 - -0.8 979,376 - +0.5 979,376 - -2.4 979,376 - -0.6 979,376 - -1.7 979,376 - -0.3 979,376 - +0.6 979,385 + -0.3 979,386 - -1.9 979,425 + +0.5 979,425 + +0.0 979,436 + -1.1 979,437 - -0.9 979,442 + -0.3 979,442 + +1.6 979,443 - -1.0 979,443 - +0.1 979,453 + +0.4 979,453 + -0.3 979,454 - -1.2 979,454 - -1.6 979,460 + -0.6 979,460 + -2.0 979,460 + -0.1 979,460 + -1.0 979,460 + -0.4 979,461 - +0.5 979,461 - +1.0 979,461 - -1.2 979,464 + +0.2 979,464 + -2.4 979,465 - +0.0 979,487 + -0.4 980,390 + MPMX19_00944 0.40 +0.8 980,390 + MPMX19_00944 0.40 -0.7 980,390 + MPMX19_00944 0.40 -1.5 980,390 + MPMX19_00944 0.40 -0.2 980,390 + MPMX19_00944 0.40 -1.1 980,391 - MPMX19_00944 0.40 -0.2 980,391 - MPMX19_00944 0.40 +0.6 980,391 - MPMX19_00944 0.40 -0.3 980,391 - MPMX19_00944 0.40 -1.0 980,391 - MPMX19_00944 0.40 +0.3 980,391 - MPMX19_00944 0.40 -0.7 981,010 + MPMX19_00944 0.71 -0.1 981,010 + MPMX19_00944 0.71 -0.1 981,010 + MPMX19_00944 0.71 -1.4 981,010 + MPMX19_00944 0.71 +0.4 981,010 + MPMX19_00944 0.71 -0.6 981,010 + MPMX19_00944 0.71 -0.8 981,010 + MPMX19_00944 0.71 +0.6 981,010 + MPMX19_00944 0.71 -0.3 981,010 + MPMX19_00944 0.71 +0.5 981,010 + MPMX19_00944 0.71 -1.4 981,010 + MPMX19_00944 0.71 +0.4 981,010 + MPMX19_00944 0.71 -1.0 981,010 + MPMX19_00944 0.71 -2.3 981,010 + MPMX19_00944 0.71 -0.8 981,010 + MPMX19_00944 0.71 -0.7 981,011 - MPMX19_00944 0.71 -0.7 981,011 - MPMX19_00944 0.71 +0.8 981,011 - MPMX19_00944 0.71 +0.0 981,011 - MPMX19_00944 0.71 -0.5 981,011 - MPMX19_00944 0.71 -1.0 981,011 - MPMX19_00944 0.71 +0.6 981,011 - MPMX19_00944 0.71 -1.4 981,011 - MPMX19_00944 0.71 -1.7 981,011 - MPMX19_00944 0.71 -1.6 981,011 - MPMX19_00944 0.71 -0.8 981,011 - MPMX19_00944 0.71 -1.9 981,011 - MPMX19_00944 0.71 -1.1 981,011 - MPMX19_00944 0.71 +0.0 981,011 - MPMX19_00944 0.71 +0.8 981,011 - MPMX19_00944 0.71 -1.3 981,011 - MPMX19_00944 0.71 -1.6 981,011 - MPMX19_00944 0.71 -0.3 981,011 - MPMX19_00944 0.71 +0.3 981,011 - MPMX19_00944 0.71 +0.0 981,011 - MPMX19_00944 0.71 -1.4 981,011 - MPMX19_00944 0.71 +0.3 981,011 - MPMX19_00944 0.71 -0.6 981,011 - MPMX19_00944 0.71 -0.7 981,011 - MPMX19_00944 0.71 +1.1 981,011 - MPMX19_00944 0.71 -0.4 981,143 + MPMX19_00944 0.77 +0.0 981,143 + MPMX19_00944 0.77 -1.3 981,143 + MPMX19_00944 0.77 -1.3 981,143 + MPMX19_00944 0.77 -0.4 981,144 - MPMX19_00944 0.77 -0.3 981,144 - MPMX19_00944 0.77 +0.8 981,144 - MPMX19_00944 0.77 -0.4 981,144 - MPMX19_00944 0.77 -0.9 981,420 - -0.6 981,420 - +0.9 981,446 + +0.3 981,446 + +0.0 981,446 + +1.6 981,447 - -1.1 981,447 - +0.2 981,447 - +0.1 981,500 + +0.1 981,500 + +0.0 981,500 + +1.1 981,500 + +0.5 981,500 + -1.1 981,500 + +1.6 981,500 + -0.9 981,500 + -0.8 981,500 + -1.6 981,500 + -0.6 981,500 + -0.8 981,500 + -1.1 981,501 - +0.0 981,501 - -0.1 981,501 - +1.0 981,501 - -0.4 981,501 - -0.5 981,501 - -0.9 981,501 - +0.0 981,501 - -2.1 981,501 - -1.7 981,501 - -0.9 981,501 - +0.1 981,501 - +0.3 981,501 - -1.0 981,739 + -0.9 981,739 + -1.0 981,739 + +0.9 981,739 + -0.1 981,739 + +1.0 981,739 + -0.9 981,739 + -0.8 981,739 + -0.6 981,739 + -0.1 981,739 + -2.2 981,739 + +0.0 981,739 + -1.0 981,739 + -1.9 981,740 - +0.8 981,740 - +1.4 981,740 - +0.8 981,740 - -0.2 981,740 - +1.1 981,740 - +1.9 981,740 - -0.4 981,740 - -2.0 981,740 - +0.4 981,803 + -0.1 981,803 + -0.2 981,803 + +1.4 981,803 + -0.6 981,803 + -2.0 981,803 + +0.9 981,803 + -1.0 981,803 + +0.9 981,803 + -1.5 981,804 - -0.5 981,804 - +0.0 981,804 - +2.0 981,804 - -1.0 981,804 - -1.0 982,000 + MPMX19_00945 0.15 -0.7 982,000 + MPMX19_00945 0.15 +0.4 982,000 + MPMX19_00945 0.15 -1.6 982,000 + MPMX19_00945 0.15 -1.6 982,000 + MPMX19_00945 0.15 +0.6 982,001 - MPMX19_00945 0.15 +0.7 982,001 - MPMX19_00945 0.15 -0.4 982,001 - MPMX19_00945 0.15 -1.6 982,001 - MPMX19_00945 0.15 -1.9 982,001 - MPMX19_00945 0.15 +0.0 982,251 + MPMX19_00945 0.36 -0.7 982,251 + MPMX19_00945 0.36 -1.5 982,251 + MPMX19_00945 0.36 -1.0 982,251 + MPMX19_00945 0.36 -1.4 982,252 - MPMX19_00945 0.36 -1.1 982,252 - MPMX19_00945 0.36 +0.8 982,252 - MPMX19_00945 0.36 -1.0
Or see this region's nucleotide sequence