Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00678 and MPMX19_00679 are separated by 101 nucleotides MPMX19_00679 and MPMX19_00680 are separated by 369 nucleotides
MPMX19_00678: MPMX19_00678 - Inositol-1-monophosphatase, at 700,522 to 701,319
_00678
MPMX19_00679: MPMX19_00679 - Elongation factor P, at 701,421 to 701,987
_00679
MPMX19_00680: MPMX19_00680 - Elongation factor P--(R)-beta-lysine ligase, at 702,357 to 703,424
_00680
Position (kb) 701
702 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 700.445 kb on - strand at 700.445 kb on - strand at 700.445 kb on - strand at 700.445 kb on - strand at 700.445 kb on - strand at 700.445 kb on - strand at 700.445 kb on - strand at 700.445 kb on - strand at 701.364 kb on - strand at 701.364 kb on - strand at 701.364 kb on - strand at 701.364 kb on - strand at 701.364 kb on - strand at 701.364 kb on - strand at 701.364 kb on - strand at 701.364 kb on - strand at 702.012 kb on - strand at 702.012 kb on - strand at 702.012 kb on - strand at 702.127 kb on + strand at 702.127 kb on + strand at 702.128 kb on - strand at 702.128 kb on - strand at 702.128 kb on - strand at 702.249 kb on + strand at 702.249 kb on + strand at 702.249 kb on + strand at 702.249 kb on + strand at 702.249 kb on + strand at 702.249 kb on + strand at 702.250 kb on - strand at 702.291 kb on + strand at 702.291 kb on + strand at 702.292 kb on - strand at 702.898 kb on - strand, within MPMX19_00680 at 702.924 kb on + strand, within MPMX19_00680 at 702.924 kb on + strand, within MPMX19_00680 at 702.924 kb on + strand, within MPMX19_00680 at 702.924 kb on + strand, within MPMX19_00680 at 702.925 kb on - strand, within MPMX19_00680
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 700,445 - -0.9 700,445 - -0.5 700,445 - +0.1 700,445 - -1.2 700,445 - +0.5 700,445 - +0.5 700,445 - -0.6 700,445 - -0.3 701,364 - +1.2 701,364 - -1.7 701,364 - +0.5 701,364 - -3.0 701,364 - -1.0 701,364 - -0.3 701,364 - +0.1 701,364 - -0.6 702,012 - -0.8 702,012 - -1.3 702,012 - +0.3 702,127 + -0.0 702,127 + +1.1 702,128 - -0.0 702,128 - -0.1 702,128 - -0.5 702,249 + +0.1 702,249 + -0.9 702,249 + +0.2 702,249 + -1.2 702,249 + +1.2 702,249 + -0.6 702,250 - -0.4 702,291 + -0.9 702,291 + +0.4 702,292 - +0.2 702,898 - MPMX19_00680 0.51 -0.8 702,924 + MPMX19_00680 0.53 -1.0 702,924 + MPMX19_00680 0.53 +2.0 702,924 + MPMX19_00680 0.53 -1.3 702,924 + MPMX19_00680 0.53 -0.2 702,925 - MPMX19_00680 0.53 -0.8
Or see this region's nucleotide sequence