Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00216

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00214 and MPMX19_00215 are separated by 176 nucleotidesMPMX19_00215 and MPMX19_00216 are separated by 444 nucleotidesMPMX19_00216 and MPMX19_00217 are separated by 49 nucleotides MPMX19_00214: MPMX19_00214 - hypothetical protein, at 217,065 to 217,559 _00214 MPMX19_00215: MPMX19_00215 - hypothetical protein, at 217,736 to 217,972 _00215 MPMX19_00216: MPMX19_00216 - 10 kDa chaperonin 1, at 218,417 to 218,707 _00216 MPMX19_00217: MPMX19_00217 - 60 kDa chaperonin 5, at 218,757 to 220,400 _00217 Position (kb) 218 219Strain fitness (log2 ratio) -2 -1 0 1 2at 217.453 kb on + strand, within MPMX19_00214at 217.486 kb on + strand, within MPMX19_00214at 217.486 kb on + strand, within MPMX19_00214at 217.486 kb on + strand, within MPMX19_00214at 217.486 kb on + strand, within MPMX19_00214at 217.486 kb on + strand, within MPMX19_00214at 217.486 kb on + strand, within MPMX19_00214at 217.486 kb on + strand, within MPMX19_00214at 217.486 kb on + strand, within MPMX19_00214at 217.486 kb on + strand, within MPMX19_00214at 217.486 kb on + strand, within MPMX19_00214at 217.486 kb on + strand, within MPMX19_00214at 217.486 kb on + strand, within MPMX19_00214at 217.486 kb on + strand, within MPMX19_00214at 217.487 kb on - strand, within MPMX19_00214at 217.487 kb on - strand, within MPMX19_00214at 217.487 kb on - strand, within MPMX19_00214at 217.487 kb on - strand, within MPMX19_00214at 217.487 kb on - strand, within MPMX19_00214at 217.487 kb on - strand, within MPMX19_00214at 217.487 kb on - strand, within MPMX19_00214at 217.487 kb on - strand, within MPMX19_00214at 217.487 kb on - strand, within MPMX19_00214at 217.487 kb on - strand, within MPMX19_00214at 217.487 kb on - strand, within MPMX19_00214at 217.487 kb on - strand, within MPMX19_00214at 217.487 kb on - strand, within MPMX19_00214at 217.487 kb on - strand, within MPMX19_00214at 217.487 kb on - strand, within MPMX19_00214at 217.498 kb on + strand, within MPMX19_00214at 217.498 kb on + strand, within MPMX19_00214at 217.498 kb on + strand, within MPMX19_00214at 217.498 kb on + strand, within MPMX19_00214at 217.498 kb on + strand, within MPMX19_00214at 217.498 kb on + strand, within MPMX19_00214at 217.498 kb on + strand, within MPMX19_00214at 217.498 kb on + strand, within MPMX19_00214at 217.498 kb on + strand, within MPMX19_00214at 217.499 kb on - strand, within MPMX19_00214at 217.499 kb on - strand, within MPMX19_00214at 217.499 kb on - strand, within MPMX19_00214at 217.499 kb on - strand, within MPMX19_00214at 217.499 kb on - strand, within MPMX19_00214at 217.622 kb on - strandat 217.738 kb on - strandat 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 218.121 kb on + strandat 218.121 kb on + strandat 218.121 kb on + strandat 218.121 kb on + strandat 218.122 kb on - strandat 218.122 kb on - strandat 218.122 kb on - strandat 218.122 kb on - strandat 218.122 kb on - strandat 218.122 kb on - strandat 218.122 kb on - strandat 218.122 kb on - strandat 218.231 kb on - strandat 218.244 kb on + strandat 218.325 kb on + strandat 218.325 kb on + strandat 218.325 kb on + strandat 218.325 kb on + strandat 218.356 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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217,453 + MPMX19_00214 0.78 -1.8
217,486 + MPMX19_00214 0.85 -0.0
217,486 + MPMX19_00214 0.85 -2.1
217,486 + MPMX19_00214 0.85 -1.0
217,486 + MPMX19_00214 0.85 -0.6
217,486 + MPMX19_00214 0.85 -1.3
217,486 + MPMX19_00214 0.85 -1.0
217,486 + MPMX19_00214 0.85 -1.4
217,486 + MPMX19_00214 0.85 -0.8
217,486 + MPMX19_00214 0.85 -0.6
217,486 + MPMX19_00214 0.85 -0.3
217,486 + MPMX19_00214 0.85 -0.6
217,486 + MPMX19_00214 0.85 +0.2
217,486 + MPMX19_00214 0.85 +1.0
217,487 - MPMX19_00214 0.85 -0.8
217,487 - MPMX19_00214 0.85 -0.4
217,487 - MPMX19_00214 0.85 -0.4
217,487 - MPMX19_00214 0.85 -0.9
217,487 - MPMX19_00214 0.85 -1.2
217,487 - MPMX19_00214 0.85 -0.0
217,487 - MPMX19_00214 0.85 -0.4
217,487 - MPMX19_00214 0.85 -1.6
217,487 - MPMX19_00214 0.85 +1.0
217,487 - MPMX19_00214 0.85 -0.4
217,487 - MPMX19_00214 0.85 +1.0
217,487 - MPMX19_00214 0.85 -0.0
217,487 - MPMX19_00214 0.85 -0.3
217,487 - MPMX19_00214 0.85 +0.3
217,487 - MPMX19_00214 0.85 +0.3
217,498 + MPMX19_00214 0.87 +2.3
217,498 + MPMX19_00214 0.87 -0.3
217,498 + MPMX19_00214 0.87 +0.4
217,498 + MPMX19_00214 0.87 +1.2
217,498 + MPMX19_00214 0.87 -0.5
217,498 + MPMX19_00214 0.87 -0.3
217,498 + MPMX19_00214 0.87 -0.8
217,498 + MPMX19_00214 0.87 -1.6
217,498 + MPMX19_00214 0.87 -0.0
217,499 - MPMX19_00214 0.88 -1.0
217,499 - MPMX19_00214 0.88 -0.0
217,499 - MPMX19_00214 0.88 +0.1
217,499 - MPMX19_00214 0.88 +0.2
217,499 - MPMX19_00214 0.88 -0.8
217,622 - -0.3
217,738 - +0.4
217,911 + MPMX19_00215 0.74 -0.5
217,911 + MPMX19_00215 0.74 +0.1
217,911 + MPMX19_00215 0.74 -1.9
217,911 + MPMX19_00215 0.74 -1.4
217,911 + MPMX19_00215 0.74 -0.8
217,911 + MPMX19_00215 0.74 -0.0
217,911 + MPMX19_00215 0.74 -0.8
217,911 + MPMX19_00215 0.74 -1.3
217,911 + MPMX19_00215 0.74 -0.7
217,911 + MPMX19_00215 0.74 -0.4
217,911 + MPMX19_00215 0.74 +0.4
217,911 + MPMX19_00215 0.74 -0.6
217,911 + MPMX19_00215 0.74 -0.6
217,911 + MPMX19_00215 0.74 +0.3
217,911 + MPMX19_00215 0.74 -2.0
217,911 + MPMX19_00215 0.74 -0.3
217,911 + MPMX19_00215 0.74 -0.6
217,912 - MPMX19_00215 0.74 -1.6
217,912 - MPMX19_00215 0.74 -0.0
217,912 - MPMX19_00215 0.74 -1.3
217,912 - MPMX19_00215 0.74 +0.3
217,912 - MPMX19_00215 0.74 +1.1
217,912 - MPMX19_00215 0.74 -1.6
217,912 - MPMX19_00215 0.74 -0.6
217,912 - MPMX19_00215 0.74 +1.6
217,912 - MPMX19_00215 0.74 +0.6
217,912 - MPMX19_00215 0.74 +0.2
217,912 - MPMX19_00215 0.74 +0.6
217,912 - MPMX19_00215 0.74 -1.2
217,912 - MPMX19_00215 0.74 -0.0
217,912 - MPMX19_00215 0.74 -0.0
217,912 - MPMX19_00215 0.74 -1.0
217,912 - MPMX19_00215 0.74 -0.3
217,912 - MPMX19_00215 0.74 -1.3
217,912 - MPMX19_00215 0.74 -0.5
217,912 - MPMX19_00215 0.74 -1.3
218,121 + -0.4
218,121 + -2.0
218,121 + -1.9
218,121 + -1.0
218,122 - -0.4
218,122 - +0.9
218,122 - -0.5
218,122 - -0.5
218,122 - +0.3
218,122 - +0.7
218,122 - +1.2
218,122 - -1.9
218,231 - -0.6
218,244 + +0.3
218,325 + -1.2
218,325 + -0.4
218,325 + +0.0
218,325 + -1.0
218,356 + -0.3

Or see this region's nucleotide sequence